Rroxscaffold_3G00248930

5'-nucleotidase surE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006194
Physical Location & Seq
Reverse (-)
42429454 .. 42433126
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248930.1

Sequence Viewer

Length: 900 bp
ATGGGTCAAGACCAACAACGGCCATTACTCGCCACCACTCTCACCTTGACAACAAAGGAAGGATATCGTGCTATTAAAGCCCGCAAGGCCCCGTCCGACTACAATGTCTATGGGTCATGCCGTCGGATGGAGCATACTCTCTCTTACGTACGACAGGCACCAATCTCGGAGAGATGTAAAACCACCCTCTTCTTCGGACCCTTCTCTATCTCCTCTTCTTCTTCCTCCTCGGACCCTCCTCCACACGGCTTCAATGGAGATATTGGGCCTTACTTGTCCAAATTCCCGTACCGACTTGATCGGTTGATTCACGACACCCGAACCAAAAACAATGGCAATCGCAACTCCGACAAGCCCACCGTGATGGTCACCAACGACGACGGAATCGACGGCCGGGGCTTCTCGCCCTTGTCCACGTCCTCGTCTCCACCAATCGCTACGGTGTTCTCGTCTGCGCACCCGACTCGGAAAACTCGCTGTGAGTCACCGCATCACTTGGCGTCGTCCGATTGCGGCCAAACAAATCTGCCAACAAACGTTGCTACTCATAAGGGGTATAAGCCGACTAGCAGGGGTAACAAGATAATCAAAATGAGGTGGAGGCAAGTTACTTCGACGATGCCAAAAATGTTGTCATCAATGGAAATGGAGAAAGATTCAGCGACATCTACCGGAATTGATACATCAACTACACCAAAAGAAGATCCTTTGTTCTCAAGAGAGGTAACTGGTTTCCAACATGATACCGATGATGATGATACCGACCACAAATGTGTTAAAGAAGGATATATTACTATCACTCCTCTAGGTGCCTTCTCTAATGCTGATGTAGATTGCAGCACCTACTTAAAAGAGTGGCTTCCGAATGTAGCTGACCTCTCCTCTTCATCTGCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

299

Amino Acids

32.96

Weight (kDa)

8.45

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
Acc16I TGCGCA 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 157, 809
AciI CCGC 3 cut(s) 82, 488, 513
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 3 cut(s) 20, 391, 514
AcsI RAATTY 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 2 cut(s) 150, 290
AfiI CCNNNNNNNGG 2 cut(s) 127, 245
AgsI TTSAA 1 cut(s) 253
AjiI CACGTC 1 cut(s) 417
AleI CACNNNNGTG 1 cut(s) 771
AluBI AGCT 1 cut(s) 872
AluI AGCT 1 cut(s) 872
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 1 cut(s) 698
AoxI GGCC 5 cut(s) 20, 87, 266, 391, 514
ApeKI GCWGC 1 cut(s) 837
ApoI RAATTY 1 cut(s) 281
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 4 cut(s) 88, 197, 232, 266
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 34, 361, 477
AvaII GGWCC 2 cut(s) 197, 232
BanI GGYRCC 2 cut(s) 157, 809
BbvI GCAGC 1 cut(s) 849
BccI CCATC 2 cut(s) 121, 358
BceAI ACGGC 4 cut(s) 35, 105, 262, 406
BcgI CGANNNNNNTGC 4 cut(s) 147, 181, 446, 480
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 567, 806
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 2 cut(s) 514, 838
BlsI GCNGC 2 cut(s) 515, 839
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 2 cut(s) 197, 232
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 4 cut(s) 88, 197, 232, 266
BmiI GGNNCC 5 cut(s) 90, 159, 199, 234, 811
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 499, 609
BpuEI CTTGAG 1 cut(s) 700
BpuMI CCSGG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 228, 394
BsaWI WCCGGW 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 245
Bse1I ACTGG 1 cut(s) 733
BseDI CCNNGG 2 cut(s) 228, 394
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 127, 245
BseNI ACTGG 1 cut(s) 733
BseRI GAGGAG 5 cut(s) 202, 217, 228, 792, 871
BseX3I CGGCCG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 849
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 5 cut(s) 22, 89, 268, 393, 516
BshNI GGYRCC 2 cut(s) 157, 809
BsiEI CGRYCG 1 cut(s) 394
BsiSI CCGG 2 cut(s) 394, 672
BsiWI CGTACG 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 127, 245
BsmAI GTCTC 1 cut(s) 429
BsmBI CGTCTC 1 cut(s) 429
BsnI GGCC 5 cut(s) 22, 89, 268, 393, 516
Bsp143I GATC 2 cut(s) 298, 703
BspACI CCGC 3 cut(s) 82, 488, 513
BspANI GGCC 5 cut(s) 22, 89, 268, 393, 516
BspLI GGNNCC 5 cut(s) 90, 159, 199, 234, 811
BspPI GGATC 1 cut(s) 698
BspT107I GGYRCC 2 cut(s) 157, 809
BsrI ACTGG 1 cut(s) 733
BssECI CCNNGG 2 cut(s) 228, 394
BssMI GATC 2 cut(s) 298, 703
BssNI GRCGYC 1 cut(s) 500
Bst4CI ACNGT 2 cut(s) 361, 442
Bst6I CTCTTC 3 cut(s) 194, 220, 889
BstACI GRCGYC 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 2 cut(s) 301, 706
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 2 cut(s) 298, 703
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 77, 86
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 393
BstSNI TACGTA 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 703
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 1 cut(s) 703
BstZI CGGCCG 1 cut(s) 391
BsuRI GGCC 5 cut(s) 22, 89, 268, 393, 516
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 4 cut(s) 88, 197, 232, 266
CseI GACGC 1 cut(s) 489
Csp6I GTAC 2 cut(s) 149, 289
CviAII CATG 2 cut(s) 117, 740
CviQI GTAC 2 cut(s) 149, 289
DpnI GATC 2 cut(s) 300, 705
DpnII GATC 2 cut(s) 298, 703
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 3 cut(s) 20, 391, 514
EagI CGGCCG 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 194, 220, 889
EarI CTCTTC 3 cut(s) 194, 220, 889
EclXI CGGCCG 1 cut(s) 391
Eco105I TACGTA 1 cut(s) 148
Eco32I GATATC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 197, 232
Eco52I CGGCCG 1 cut(s) 391
Eco91I GGTNACC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 367
EcoRV GATATC 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 2 cut(s) 120, 743
FaiI YATR 8 cut(s) 111, 118, 135, 549, 558, 741, 789, 898
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FatI CATG 2 cut(s) 116, 739
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 2 cut(s) 514, 838
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 514, 838
FspBI CTAG 2 cut(s) 567, 806
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 1 cut(s) 456
GluI GCNGC 2 cut(s) 514, 838
HaeIII GGCC 5 cut(s) 22, 89, 268, 393, 516
HapII CCGG 2 cut(s) 394, 672
HgaI GACGC 1 cut(s) 489
HhaI GCGC 1 cut(s) 457
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 2 cut(s) 120, 743
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HinfI GANTC 5 cut(s) 307, 384, 463, 482, 656
HpaII CCGG 2 cut(s) 394, 672
HphI GGTGA 3 cut(s) 34, 361, 477
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 9 cut(s) 97, 126, 169, 197, 232, 349, 468, 508, 864
Hpy188III TCNNGA 3 cut(s) 8, 311, 717
Hpy8I GTNNAC 1 cut(s) 414
Hpy99I CGWCG 6 cut(s) 126, 380, 383, 392, 505, 619
HpyAV CCTTC 4 cut(s) 53, 211, 776, 823
HpyCH4III ACNGT 2 cut(s) 361, 442
HpyCH4IV ACGT 3 cut(s) 147, 416, 537
HpyCH4V TGCA 1 cut(s) 837
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 86
HpySE526I ACGT 3 cut(s) 147, 416, 537
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 2 cut(s) 120, 743
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 2 cut(s) 298, 703
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 140, 407, 556, 685, 714
Lsp1109I GCAGC 1 cut(s) 849
LweI GCATC 2 cut(s) 499, 609
MaeI CTAG 2 cut(s) 567, 806
MaeII ACGT 3 cut(s) 147, 416, 537
MaeIII GTNAC 5 cut(s) 367, 483, 575, 607, 724
MalI GATC 2 cut(s) 300, 705
MboI GATC 2 cut(s) 298, 703
MboII GAAGA 7 cut(s) 181, 184, 207, 210, 213, 713, 876
MflI RGATCY 1 cut(s) 703
MluCI AATT 2 cut(s) 281, 675
MlyI GAGTC 2 cut(s) 457, 491
MmeI TCCRAC 4 cut(s) 104, 120, 372, 760
MseI TTAA 3 cut(s) 75, 777, 848
MslI CAYNNNNRTG 2 cut(s) 362, 771
MspI CCGG 2 cut(s) 394, 672
MspR9I CCNGG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 77, 86
NciI CCSGG 1 cut(s) 395
NdeII GATC 2 cut(s) 298, 703
NlaIII CATG 2 cut(s) 120, 743
NlaIV GGNNCC 5 cut(s) 90, 159, 199, 234, 811
NmuCI GTSAC 2 cut(s) 367, 483
NsbI TGCGCA 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 771
PcsI WCGNNNNNNNCGW 2 cut(s) 384, 446
PfeI GAWTC 3 cut(s) 307, 384, 656
Pfl23II CGTACG 1 cut(s) 148
PkrI GCNGC 2 cut(s) 515, 839
PleI GAGTC 2 cut(s) 457, 490
PpsI GAGTC 2 cut(s) 457, 490
Ppu21I YACGTR 1 cut(s) 148
Psp1406I AACGTT 1 cut(s) 537
PspEI GGTNACC 1 cut(s) 367
PspLI CGTACG 1 cut(s) 148
PspN4I GGNNCC 5 cut(s) 90, 159, 199, 234, 811
PspPI GGNCC 4 cut(s) 88, 197, 232, 266
PsuI RGATCY 1 cut(s) 703
RsaI GTAC 2 cut(s) 150, 290
RsaNI GTAC 2 cut(s) 149, 289
RseI CAYNNNNRTG 2 cut(s) 362, 771
SaqAI TTAA 3 cut(s) 75, 777, 848
SatI GCNGC 2 cut(s) 514, 838
Sau3AI GATC 2 cut(s) 298, 703
Sau96I GGNCC 4 cut(s) 88, 197, 232, 266
SchI GAGTC 2 cut(s) 457, 491
ScrFI CCNGG 1 cut(s) 395
SfaNI GCATC 2 cut(s) 499, 609
SinI GGWCC 2 cut(s) 197, 232
SmiMI CAYNNNNRTG 2 cut(s) 362, 771
SmlI CTYRAG 1 cut(s) 715
SmoI CTYRAG 1 cut(s) 715
SnaBI TACGTA 1 cut(s) 148
Sse9I AATT 2 cut(s) 281, 675
SsiI CCGC 3 cut(s) 82, 488, 513
SspMI CTAG 2 cut(s) 567, 806
StyD4I CCNGG 1 cut(s) 393
TaaI ACNGT 2 cut(s) 361, 442
TaiI ACGT 3 cut(s) 150, 419, 540
TaqI TCGA 2 cut(s) 387, 614
TasI AATT 2 cut(s) 281, 675
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 3 cut(s) 307, 384, 656
Tru1I TTAA 3 cut(s) 75, 777, 848
Tru9I TTAA 3 cut(s) 75, 777, 848
TseFI GTSAC 2 cut(s) 367, 483
TseI GCWGC 1 cut(s) 837
Tsp45I GTSAC 2 cut(s) 367, 483
TspDTI ATGAA 1 cut(s) 876
TspGWI ACGGA 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 197, 232
XapI RAATTY 1 cut(s) 281
XspI CTAG 2 cut(s) 567, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.