Rorug04G0141100

5'-nucleotidase surE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006194
Physical Location & Seq
Forward (+)
23305138 .. 23309373
4236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0141100.1

Sequence Viewer

Length: 480 bp
ATGGGGGGAGCGTGGATCGCAACGACTATGGCAGTGGTGGTGTGTTTGGTAGGTGCATCATCATCGGTAGAGCAGCTGAGCACTAGAGAATGTGAGAATCTTGGTTTCACTGGGCTTGCTTTGTGCTCTGATTGCAACAGTTTGGCTGACTATGTCAAAGACCAAGAATTGGTATCAGACTGTAAGAAGTGTTGCACTGAGGATTCCAATGATTCCATGACAAAGATTACTTATTCTGGTGCGATACTTGAGGTCTGCATGAGAAAACTGGTATTTTATCCAGAAATTGTTGGCTTCATTGAAGAAGAGAAGGATCGGTTTCCATCAGTTAAAGTTCAATACGTTTTCAATTCTCCTCCGAAGTTGATCATGCTAGATGATGCAGGCGAACATAAGGAAACAGTAAGAATCGACAACTGGAAGCGGGAACATATACTTCAGTTTCTGCAAGGGAAGGTGAAGCCTACATCAGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

159

Amino Acids

17.7

Weight (kDa)

4.96

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sep15_SelM PF08806 80 - 153 1.1e-28 Sep15/SelM redox domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AciI CCGC 1 cut(s) 424
AclWI GGATC 2 cut(s) 23, 321
AcuI CTGAAG 1 cut(s) 422
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 3 cut(s) 302, 338, 349
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 83, 128
AlwI GGATC 2 cut(s) 23, 321
AlwNI CAGNNNCTG 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 469
Bbv12I GWGCWC 2 cut(s) 83, 128
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 1 cut(s) 366
BfaI CTAG 2 cut(s) 84, 374
BisI GCNGC 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 65, 370
BmuI ACTGGG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 3 cut(s) 115, 273, 422
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 68, 189
BseNI ACTGG 3 cut(s) 115, 273, 422
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 83, 128
BslI CCNNNNNNNGG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 83, 128
Bsp143I GATC 3 cut(s) 15, 313, 366
Bsp1720I GCTNAGC 1 cut(s) 77
BspACI CCGC 1 cut(s) 424
BspCNI CTCAG 2 cut(s) 69, 190
BspPI GGATC 2 cut(s) 23, 321
BsrI ACTGG 3 cut(s) 115, 273, 422
BssMI GATC 3 cut(s) 15, 313, 366
Bst4CI ACNGT 3 cut(s) 140, 182, 403
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 117, 385
BstDEI CTNAG 2 cut(s) 77, 198
BstKTI GATC 3 cut(s) 18, 316, 369
BstMBI GATC 3 cut(s) 15, 313, 366
BstMWI GCNNNNNNNGC 2 cut(s) 17, 132
BstV1I GCAGC 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 39, 108, 195
Cac8I GCNNGC 2 cut(s) 117, 385
CaiI CAGNNNCTG 1 cut(s) 445
CviAII CATG 3 cut(s) 217, 259, 370
CviJI RGCY 5 cut(s) 76, 115, 146, 294, 463
CviKI_1 RGCY 5 cut(s) 76, 115, 146, 294, 463
DdeI CTNAG 2 cut(s) 77, 198
DpnI GATC 3 cut(s) 17, 315, 368
DpnII GATC 3 cut(s) 15, 313, 366
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 422
FaeI CATG 3 cut(s) 220, 262, 373
FaiI YATR 8 cut(s) 29, 153, 218, 260, 371, 393, 432, 434
FatI CATG 3 cut(s) 216, 258, 369
FauI CCCGC 1 cut(s) 417
FbaI TGATCA 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 2 cut(s) 84, 374
GluI GCNGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 220, 262, 373
HinfI GANTC 4 cut(s) 97, 203, 212, 408
HphI GGTGA 1 cut(s) 469
Hpy188I TCNGA 4 cut(s) 130, 178, 360, 479
Hpy188III TCNNGA 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 304, 448
HpyCH4III ACNGT 3 cut(s) 140, 182, 403
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 6 cut(s) 56, 135, 195, 258, 383, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 132
HpyF3I CTNAG 2 cut(s) 77, 198
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 3 cut(s) 220, 262, 373
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 3 cut(s) 15, 313, 366
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 96, 222, 254, 294, 369, 403
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 65, 370
MaeI CTAG 2 cut(s) 84, 374
MaeII ACGT 1 cut(s) 342
MalI GATC 3 cut(s) 17, 315, 368
MboI GATC 3 cut(s) 15, 313, 366
MboII GAAGA 2 cut(s) 314, 317
MhlI GDGCHC 2 cut(s) 83, 128
MluCI AATT 3 cut(s) 167, 285, 349
MnlI CCTC 3 cut(s) 193, 244, 366
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 17, 132
NdeII GATC 3 cut(s) 15, 313, 366
NlaIII CATG 3 cut(s) 220, 262, 373
PfeI GAWTC 4 cut(s) 97, 203, 212, 408
PflFI GACNNNGTC 1 cut(s) 152
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 75
PstNI CAGNNNCTG 1 cut(s) 445
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 3 cut(s) 15, 313, 366
SduI GDGCHC 2 cut(s) 83, 128
SetI ASST 5 cut(s) 55, 78, 255, 345, 459
SfaNI GCATC 2 cut(s) 65, 370
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 3 cut(s) 167, 285, 349
SsiI CCGC 1 cut(s) 424
SspMI CTAG 2 cut(s) 84, 374
TaaI ACNGT 3 cut(s) 140, 182, 403
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 411
TasI AATT 3 cut(s) 167, 285, 349
TfiI GAWTC 4 cut(s) 97, 203, 212, 408
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 3 cut(s) 39, 115, 202
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 3 cut(s) 39, 115, 202
Tth111I GACNNNGTC 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 169
XspI CTAG 2 cut(s) 84, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.