Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006194

Physical Location & Seq

Genomic Coordinates Forward (+)

7456355 .. 7468449

Gene Structure 12095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGGTGGAGGCAAGTTACTTCGACGATGCCAAAAATGTTGTCATCAATGGAAATGGAGAAAGATTCGGCGACATCTACCGGAATTGATACATCAACTACACCAAAAGAAGATCCTTTGTTCTCAAGAGAGGTAACTGGTTTCCAACATGATACCGATGATGATACCGACCACAAATGTGTTAAAGAAGGATATATTACTATCACTCCTCTAGGTGCCTTCTCTAATGCTGATGTAGATTGCAGCACCTACTTAAAAGAGTGGCTTCCGAATGTAGGTGACCTCTCCTCTTCATCGCCCTATAAGGAGGGTATGAAATTTACCCAAAACAAGTGGTCCGGAAAAACAAGAGCCGAACTTAGTTCCACACGGCCATATATTCGGCCATTTACCACTGCTCCTTCTAACTCCAATCATGGAACCACCCAACTGTTCCAGCGGTACACTCCTCCAAAAATCCTCCACTGCTCCGATTCCACACCTCGAATTGTACGAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110

Pfam Domains

Protein Families

SurE

Protein Analysis

167

Amino Acids

18.82

Weight (kDa)

6.42

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14930 AT4G14930
fragaria_vesca	FvH4_4g15450 FvH4_4g15450 FvH4_4g15450
malus_domestica	MD13G1192300.v1.1 MD16G1192900.v1.1
prunus_persica	Prupe.1G013000_v2.0.a1 Prupe.1G013000_v2.0.a1
pyrus_communis	pycom16g16280
rosa_chinensis	RchiOBHm_Chr4g0416341
rosa_laevigata	RLG00000007992
rosa_multiflora	Rmu_sc0001260.1_g000005
rosa_roxburghii	Rroxscaffold_2G00115680 Rroxscaffold_3G00248930 Rroxscaffold_5G00347220 Rroxscaffold_5G00360190 Rroxscaffold_5G00366940 Rroxscaffold_6G00391130
rosa_rugosa	Rorug04G0141000 Rorug04G0141100 Rorug04G0141200
rosa_samantha	Rh4AG203200 Rh4BG200600 Rh4CG214600 Rh4DG200300
rosa_wichuraiana	Rw4G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	2 cut(s)	371, 383
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	2 cut(s)	443, 492
AfiI	CCNNNNNNNGG	1 cut(s)	275
AleI	CACNNNNGTG	1 cut(s)	177
AlwI	GGATC	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	2 cut(s)	371, 383
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	317
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	336
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	217, 421
BmsI	GCATC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	109
BsaWI	WCCGGW	2 cut(s)	80, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	190, 220, 382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	3 cut(s)	198, 277, 438
BseXI	GCAGC	1 cut(s)	255
BshFI	GGCC	2 cut(s)	373, 385
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	81, 339
BslI	CCNNNNNNNGG	1 cut(s)	275
BsnI	GGCC	2 cut(s)	373, 385
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	373, 385
BspEI	TCCGGA	1 cut(s)	338
BspLI	GGNNCC	2 cut(s)	217, 421
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	432
Bst6I	CTCTTC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	359
BstEII	GGTNACC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstPI	GGTNACC	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	373, 385
BtgZI	GCGATG	1 cut(s)	279
BtsI	GCAGTG	2 cut(s)	393, 463
BtsIMutI	CAGTG	2 cut(s)	393, 463
Cfr13I	GGNCC	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	442, 491
CspCI	CAANNNNNGTGG	2 cut(s)	314, 349
CviAII	CATG	2 cut(s)	149, 416
CviJI	RGCY	4 cut(s)	265, 353, 373, 385
CviKI_1	RGCY	4 cut(s)	265, 353, 373, 385
CviQI	GTAC	2 cut(s)	442, 491
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	371, 383
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	336
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
FaeI	CATG	2 cut(s)	152, 419
FaiI	YATR	7 cut(s)	150, 195, 303, 314, 376, 378, 417
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	148, 415
Fnu4HI	GCNGC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	373, 385
HapII	CCGG	2 cut(s)	81, 339
Hin1II	CATG	2 cut(s)	152, 419
HinfI	GANTC	2 cut(s)	65, 473
HpaII	CCGG	2 cut(s)	81, 339
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	2 cut(s)	270, 472
Hpy188III	TCNNGA	2 cut(s)	126, 339
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	182, 229, 411
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	2 cut(s)	152, 419
Kpn2I	TCCGGA	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	2 cut(s)	403, 473
LpnPI	CCDG	4 cut(s)	94, 123, 352, 449
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	16, 133, 278
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	122, 282
MflI	RGATCY	1 cut(s)	112
MluCI	AATT	4 cut(s)	84, 317, 486, 495
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	9 cut(s)	3, 124, 219, 293, 298, 301, 459, 470, 492
MroI	TCCGGA	1 cut(s)	338
MseI	TTAA	3 cut(s)	183, 254, 502
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	439
MspI	CCGG	2 cut(s)	81, 339
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	152, 419
NlaIV	GGNNCC	2 cut(s)	217, 421
NmuCI	GTSAC	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	65, 473
PkrI	GCNGC	1 cut(s)	245
PspEI	GGTNACC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	217, 421
PspPI	GGNCC	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	2 cut(s)	443, 492
RsaNI	GTAC	2 cut(s)	442, 491
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	183, 254, 502
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	336
SetI	ASST	7 cut(s)	8, 135, 217, 251, 280, 285, 484
SfaNI	GCATC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	84, 317, 486, 495
SsiI	CCGC	1 cut(s)	439
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	432
TaqI	TCGA	2 cut(s)	23, 484
TasI	AATT	4 cut(s)	84, 317, 486, 495
TfiI	GAWTC	2 cut(s)	65, 473
Tru1I	TTAA	3 cut(s)	183, 254, 502
Tru9I	TTAA	3 cut(s)	183, 254, 502
TscAI	CASTG	2 cut(s)	400, 470
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	282, 329
TspRI	CASTG	2 cut(s)	400, 470
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	317
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.