Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006194

Physical Location & Seq

Genomic Coordinates Reverse (-)

18502225 .. 18504463

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATATATTTATACCGGCGGTGGAGACGAACGGTAAAAGCATGGTCTATGCGGGACGGCACCATATCATTCACTATGTCGGTCATAAATCGGTAGTTTCAACACTTGCGGTTTGTGACGGTGTTACGTATAGTGGCAGTTGGGATGGAACCATCCGATTATGGAGTCTCGGTGATCACGGTCCTTTGGTAGTACTAGGGGAAGACACATCCGGAACTGTGGCTTCTTTTGAGGCCCTAAACGACTCCAAAAGCCCGAAAAAGCCCACACGACGTGGCAAATTGACGAGTTTTGTTTCTGGCGTCGTTCCCTTTCCGGAAACTTATAACAATCGCGATTTGGACACAGAATGCCAAAGTTGCGTAAACCGGGTTTTCCTCCTTTTCTACGATCGAGCTGTTCTTCAATTCGGACTCCATTCGTTCTATGTCAATAGTCCATTGCAAATGTGTGGAAAAATGCCCCTAGACATTAATTTTGTAGGACTGTTAGTGTGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

WD40 zf-RING_2 zf-RING_UBOX

Protein Analysis

167

Amino Acids

18.46

Weight (kDa)

6.57

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14930 AT4G14930
fragaria_vesca	FvH4_4g15450 FvH4_4g15450 FvH4_4g15450
malus_domestica	MD13G1192300.v1.1 MD16G1192900.v1.1
prunus_persica	Prupe.1G013000_v2.0.a1 Prupe.1G013000_v2.0.a1
pyrus_communis	pycom16g16280
rosa_chinensis	RchiOBHm_Chr4g0416341
rosa_laevigata	RLG00000007992
rosa_multiflora	Rmu_sc0001260.1_g000005
rosa_roxburghii	Rroxscaffold_2G00115680 Rroxscaffold_3G00248930 Rroxscaffold_5G00347220 Rroxscaffold_5G00360190 Rroxscaffold_5G00366940 Rroxscaffold_6G00391130
rosa_rugosa	Rorug04G0141000 Rorug04G0141100 Rorug04G0141200
rosa_samantha	Rh4AG203200 Rh4BG200600 Rh4CG214600 Rh4DG200300
rosa_wichuraiana	Rw4G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	60
AccII	CGCG	1 cut(s)	336
AccIII	TCCGGA	2 cut(s)	212, 316
AciI	CCGC	3 cut(s)	20, 53, 110
AcoI	YGGCCR	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	102, 407
AjiI	CACGTC	1 cut(s)	275
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	20, 173
Aor13HI	TCCGGA	2 cut(s)	212, 316
AoxI	GGCC	2 cut(s)	234, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AseI	ATTAAT	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	182, 235
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	210
BccI	CCATC	2 cut(s)	140, 161
BceAI	ACGGC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	2 cut(s)	20, 173
BfaI	CTAG	2 cut(s)	197, 467
BmcAI	AGTACT	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	182, 235
BmiI	GGNNCC	2 cut(s)	62, 151
BmrFI	CCNGG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	303
BsaWI	WCCGGW	2 cut(s)	212, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse118I	RCCGGY	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	440
BseAI	TCCGGA	2 cut(s)	212, 316
BseGI	GGATG	3 cut(s)	151, 153, 209
BseMI	GCAATG	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	236, 499
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	4 cut(s)	17, 213, 317, 370
BslFI	GGGAC	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	20, 173
BsmBI	CGTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	236, 499
Bsp13I	TCCGGA	2 cut(s)	212, 316
Bsp143I	GATC	2 cut(s)	175, 391
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	3 cut(s)	20, 53, 110
BspANI	GGCC	2 cut(s)	236, 499
BspEI	TCCGGA	2 cut(s)	212, 316
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	62, 151
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	2 cut(s)	175, 391
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	5 cut(s)	35, 122, 182, 220, 489
BstACI	GRCGYC	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	151, 153, 209
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	2 cut(s)	178, 394
BstMAI	GTCTC	2 cut(s)	20, 173
BstMBI	GATC	2 cut(s)	175, 391
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	369
BstSNI	TACGTA	1 cut(s)	129
BstUI	CGCG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	236, 499
BtrI	CACGTC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	151, 153, 209
BtuMI	TCGCGA	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	182, 235
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	6 cut(s)	224, 236, 255, 265, 398, 499
CviKI_1	RGCY	6 cut(s)	224, 236, 255, 265, 398, 499
CviQI	GTAC	1 cut(s)	194
DpnI	GATC	2 cut(s)	177, 393
DpnII	GATC	2 cut(s)	175, 391
DraIII	CACNNNGTG	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	497
Eco105I	TACGTA	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	46
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	1 cut(s)	175
FokI	GGATG	3 cut(s)	140, 158, 196
FspBI	CTAG	2 cut(s)	197, 467
HaeIII	GGCC	2 cut(s)	236, 499
HapII	CCGG	4 cut(s)	17, 213, 317, 370
HgaI	GACGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	3 cut(s)	166, 245, 414
HpaII	CCGG	4 cut(s)	17, 213, 317, 370
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	158, 413
Hpy188III	TCNNGA	3 cut(s)	213, 317, 335
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	276, 308
HpyCH4III	ACNGT	5 cut(s)	35, 122, 182, 220, 489
HpyCH4IV	ACGT	2 cut(s)	128, 274
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	128, 274
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	46
Kpn2I	TCCGGA	2 cut(s)	212, 316
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	175, 391
LpnPI	CCDG	5 cut(s)	30, 226, 285, 330, 383
MaeI	CTAG	2 cut(s)	197, 467
MaeII	ACGT	2 cut(s)	128, 274
MaeIII	GTNAC	2 cut(s)	116, 124
MalI	GATC	2 cut(s)	177, 393
MboI	GATC	2 cut(s)	175, 391
MboII	GAAGA	2 cut(s)	215, 395
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	3 cut(s)	281, 407, 475
MluNI	TGGCCA	1 cut(s)	499
MlyI	GAGTC	3 cut(s)	175, 239, 408
MnlI	CCTC	2 cut(s)	226, 389
Mox20I	TGGCCA	1 cut(s)	499
MroI	TCCGGA	2 cut(s)	212, 316
MscI	TGGCCA	1 cut(s)	499
MseI	TTAA	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	499
MspI	CCGG	4 cut(s)	17, 213, 317, 370
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	356
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	2 cut(s)	175, 391
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	62, 151
NmuCI	GTSAC	1 cut(s)	116
NruI	TCGCGA	1 cut(s)	336
PctI	GAATGC	1 cut(s)	356
Ple19I	CGATCG	1 cut(s)	394
PleI	GAGTC	3 cut(s)	174, 239, 408
PpsI	GAGTC	3 cut(s)	174, 239, 408
Ppu21I	YACGTR	1 cut(s)	129
PshBI	ATTAAT	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	62, 151
PspPI	GGNCC	2 cut(s)	182, 235
PvuI	CGATCG	1 cut(s)	394
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	2 cut(s)	175, 391
Sau96I	GGNCC	2 cut(s)	182, 235
ScaI	AGTACT	1 cut(s)	195
SchI	GAGTC	3 cut(s)	175, 239, 408
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	3 cut(s)	131, 277, 400
SinI	GGWCC	1 cut(s)	182
SnaBI	TACGTA	1 cut(s)	129
Sse9I	AATT	3 cut(s)	281, 407, 475
SsiI	CCGC	3 cut(s)	20, 53, 110
SspMI	CTAG	2 cut(s)	197, 467
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	5 cut(s)	35, 122, 182, 220, 489
TaiI	ACGT	2 cut(s)	131, 277
TaqI	TCGA	1 cut(s)	394
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	281, 407, 475
TatI	WGTACW	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	474
XspI	CTAG	2 cut(s)	197, 467
ZrmI	AGTACT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.