Rorug04G0141200

5'-nucleotidase surE

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
23319273 .. 23319565
293 bp
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UTR
Exon/CDS
Intron
Rorug04G0141200.1

Sequence Viewer

Length: 207 bp
ATGAAAACCTTCAATGCTGAAACTGGTAGGGTTAACAAACTGCCTAAAGTGAAATCGCTTCCGGGCGTACCTAAACAACCAGGTGGAGTTGAGTGTGGCTATTATGTTATGCGATACATGAAAGAGATAATAGAGGATGAGACACTTTCATTTCCTACCAAGGTACATGCATATATTATATCTCAAAGAACATTTTGGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.84

Weight (kDa)

9.42

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 69, 165
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 134
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 63, 81
BmrFI CCNGG 2 cut(s) 63, 81
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 61, 79
BtsCI GGATG 1 cut(s) 142
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 2 cut(s) 68, 164
CviAII CATG 2 cut(s) 118, 167
CviJI RGCY 1 cut(s) 99
CviKI_1 RGCY 1 cut(s) 99
CviQI GTAC 2 cut(s) 68, 164
Eco130I CCWWGG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 121, 170
FaiI YATR 7 cut(s) 105, 110, 119, 168, 172, 174, 179
FatI CATG 2 cut(s) 117, 166
FokI GGATG 1 cut(s) 149
HapII CCGG 1 cut(s) 62
Hin1II CATG 2 cut(s) 121, 170
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 170
Hsp92II CATG 2 cut(s) 121, 170
KspAI GTTAAC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 9, 66, 75, 93
MabI ACCWGGT 1 cut(s) 79
MluCI AATT 1 cut(s) 202
MnlI CCTC 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 33, 201, 205
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 63, 81
MvaI CCWGG 1 cut(s) 81
NciI CCSGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 121, 170
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 170
PacI TTAATTAA 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
RsaI GTAC 2 cut(s) 69, 165
RsaNI GTAC 2 cut(s) 68, 164
SaqAI TTAA 3 cut(s) 33, 201, 205
ScrFI CCNGG 2 cut(s) 63, 81
SetI ASST 4 cut(s) 11, 73, 85, 165
SexAI ACCWGGT 1 cut(s) 79
SgeI CNNG 8 cut(s) 36, 74, 75, 92, 93, 130, 172, 179
Sse9I AATT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 61, 79
StyI CCWWGG 1 cut(s) 159
TasI AATT 1 cut(s) 202
Tru1I TTAA 3 cut(s) 33, 201, 205
Tru9I TTAA 3 cut(s) 33, 201, 205
TspDTI ATGAA 3 cut(s) 17, 134, 138
VspI ATTAAT 1 cut(s) 201
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.