Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006194

Physical Location & Seq

Genomic Coordinates Forward (+)

48870115 .. 48876028

Gene Structure 5914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCTGGTCATAAATCAGTAGTTTCAAAACTTGCGGTTTGTGATAGTGTTACGTATACGCGGCGTTGGGATGGAACCATCCGATTATGGAGTCTCGGTGATCACGGTCCTTTGGCGGTACTAGGGGAAGACACATACGGAAGCGTGGCTTCGAGGGTACGAAATTTACCCAAAACAAGTGGCCTGGAAAAACGGTGGCGAGCTCGGTGGTCCACACAGCCATATATTCTGCCATTCACCATTGATCCTTCTAACTCCAATCATGGACATCACCCAAACTGTTCCAGCAGCTCATCTCCTCCAAAAATTCTAATTTCCCCGGTTCCACAACTCAGTTCACTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

WD40 zf-RING_2 zf-RING_UBOX

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

9.83

Isoelectric Point (pI)

73.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14930 AT4G14930
fragaria_vesca	FvH4_4g15450 FvH4_4g15450 FvH4_4g15450
malus_domestica	MD13G1192300.v1.1 MD16G1192900.v1.1
prunus_persica	Prupe.1G013000_v2.0.a1 Prupe.1G013000_v2.0.a1
pyrus_communis	pycom16g16280
rosa_chinensis	RchiOBHm_Chr4g0416341
rosa_laevigata	RLG00000007992
rosa_multiflora	Rmu_sc0001260.1_g000005
rosa_roxburghii	Rroxscaffold_2G00115680 Rroxscaffold_3G00248930 Rroxscaffold_5G00347220 Rroxscaffold_5G00360190 Rroxscaffold_5G00366940 Rroxscaffold_6G00391130
rosa_rugosa	Rorug04G0141000 Rorug04G0141100 Rorug04G0141200
rosa_samantha	Rh4AG203200 Rh4BG200600 Rh4CG214600 Rh4DG200300
rosa_wichuraiana	Rw4G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	1 cut(s)	61
AciI	CCGC	3 cut(s)	35, 61, 116
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	163, 306
AfaI	GTAC	2 cut(s)	120, 159
AgsI	TTSAA	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	203, 291
AluI	AGCT	2 cut(s)	203, 291
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	163, 306
AspS9I	GGNCC	2 cut(s)	107, 210
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	3 cut(s)	110, 229, 263
AvaII	GGWCC	2 cut(s)	107, 210
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	65, 86
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	2 cut(s)	62, 289
BlsI	GCNGC	2 cut(s)	63, 290
Bme1390I	CCNGG	2 cut(s)	185, 320
Bme18I	GGWCC	2 cut(s)	107, 210
BmgT120I	GGNCC	2 cut(s)	107, 210
BmiI	GGNNCC	2 cut(s)	76, 324
BmrFI	CCNGG	2 cut(s)	185, 320
BpiI	GAAGAC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	76, 78
BseMII	CTCAG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	100, 244
BspACI	CCGC	3 cut(s)	35, 61, 116
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	76, 324
BspPI	GGATC	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	100, 244
BssNAI	GTATAC	1 cut(s)	57
Bst1107I	GTATAC	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	107, 195, 281
BstBAI	YACGTR	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	76, 78
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	103, 247
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	100, 244
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	183, 318
BstSNI	TACGTA	1 cut(s)	54
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	135
BstZ17I	GTATAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	76, 78
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	107, 210
Csp6I	GTAC	2 cut(s)	119, 158
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	5 cut(s)	149, 183, 203, 220, 291
CviKI_1	RGCY	5 cut(s)	149, 183, 203, 220, 291
CviQI	GTAC	2 cut(s)	119, 158
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	2 cut(s)	102, 246
DpnII	GATC	2 cut(s)	100, 244
Ecl136II	GAGCTC	1 cut(s)	203
Eco105I	TACGTA	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	107, 210
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	1 cut(s)	266
FaiI	YATR	7 cut(s)	12, 57, 88, 136, 223, 225, 264
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FatI	CATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	62, 289
FokI	GGATG	2 cut(s)	65, 83
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	62, 289
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	62, 289
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	3 cut(s)	110, 229, 263
Hpy166II	GTNNAC	3 cut(s)	57, 213, 338
Hpy188I	TCNGA	1 cut(s)	83
Hpy8I	GTNNAC	3 cut(s)	57, 213, 338
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	107, 195, 281
HpyCH4IV	ACGT	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 244
LpnPI	CCDG	4 cut(s)	170, 197, 298, 333
Lsp1109I	GCAGC	1 cut(s)	300
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	102, 246
MboI	GATC	2 cut(s)	100, 244
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	4 cut(s)	163, 306, 312, 343
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	2 cut(s)	147, 309
MseI	TTAA	1 cut(s)	346
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	185, 320
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	61
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	100, 244
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	76, 324
PkrI	GCNGC	2 cut(s)	63, 290
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	76, 324
PspPI	GGNCC	2 cut(s)	107, 210
RsaI	GTAC	2 cut(s)	120, 159
RsaNI	GTAC	2 cut(s)	119, 158
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	2 cut(s)	62, 289
Sau3AI	GATC	2 cut(s)	100, 244
Sau96I	GGNCC	2 cut(s)	107, 210
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	185, 320
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	3 cut(s)	56, 205, 293
SinI	GGWCC	2 cut(s)	107, 210
SnaBI	TACGTA	1 cut(s)	54
Sse9I	AATT	4 cut(s)	163, 306, 312, 343
SsiI	CCGC	3 cut(s)	35, 61, 116
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	183, 318
TaaI	ACNGT	3 cut(s)	107, 195, 281
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	152
TasI	AATT	4 cut(s)	163, 306, 312, 343
TauI	GCSGC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TseI	GCWGC	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	107, 210
XapI	RAATTY	2 cut(s)	163, 306
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.