Rw4G017180

5'-nucleotidase surE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0006194
Physical Location & Seq
Forward (+)
38731963 .. 38737294
5332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017180.1

Sequence Viewer

Length: 912 bp
ATGGCAACCAGCAACTCCGACAAGCCCACCGTGATGGTCACCAACGACGACGGAATCGACGGCCCTGGACTTCTTGCCCTCGTCCACGTCCTCGTCTCCACCAATCGCTACAATGTTCTCGTCTGCGCTCCCGACTCGGAAAACTCTGCTGTGAGTCACTGCATCACTTGGCGTCGTCCGATTGCCGCCAAACAAGTTGACATCGCCGGAGCAACGGCTTTTGCTGTTTCTGGGTCTCCGGCTGATTGTGCTTCTTTGGGTGTTTCTAAAGCGCTTTTTCCTTCGGTTCCTGACTTGGTGATCAGCGGCATAAACAAGGGCAGCAACTGTGGTCATCACATTGTTTACTCTGGTACTGTGGCTGGCGCTCGAGAAGCTTTCTTTAATGGTGTACCTGCTGTCTCTGTATCGTATGATTGGGTTGAAGGCGAGAGTCACATTAATGACTTCACACTTGGTGCCGAGGCCTGCTTACCTATCATAAATGCAATACTCGTGGAAATAAAAAATCAAACCTTTCCTCAAAGATGTTTTTTGAATGTAGATCTGCCAACAAACGTTGCTACTCATAAGGGGTATAAGCTGACTAAGCAGGGTAACAGTATAATCAAAATGAGGTGGAGGCAAGTAACTTTGAAGATCCCAAAAATGTTGTCATCAATGGAAATGGAGAAAGATTCAGCAACATCTACTGGAATTGATACATCAACTACGCCAAAAGAAGATCCTTTGTTCTCAAGAGAGGTAACTGGTTTCCAACATGATACTGATGATGATACCGACCACAAATGTGTTAAAGAAGGATATATTACTATCACTCCTCTAGGTGCCTTCTCTAATGCTGATGTAGATTGCAGCACCTACTTAAAAGAGTGGCTTCCAAATGTAGCTGACCTCTCCTCTGCCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko00760 ko01100 ko01110 map00230 map00240 map00760 map01100 map01110
Pfam Domains
Protein Families
SurE

Protein Analysis

303

Amino Acids

32.51

Weight (kDa)

5.21

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SurE PF01975 11 - 202 8e-53 Survival protein SurE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 2 cut(s) 458, 827
AciI CCGC 2 cut(s) 186, 306
AclI AACGTT 1 cut(s) 558
AclWI GGATC 2 cut(s) 634, 719
AcyI GRCGYC 1 cut(s) 172
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 2 cut(s) 355, 393
AfeI AGCGCT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 425, 538, 637
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 64
AleI CACNNNNGTG 1 cut(s) 789
AluBI AGCT 3 cut(s) 377, 583, 890
AluI AGCT 3 cut(s) 377, 583, 890
Alw26I GTCTC 3 cut(s) 100, 240, 406
AlwI GGATC 2 cut(s) 634, 719
AlwNI CAGNNNCTG 1 cut(s) 327
Ama87I CYCGRG 1 cut(s) 369
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 2 cut(s) 61, 465
ApeKI GCWGC 2 cut(s) 321, 855
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
AseI ATTAAT 1 cut(s) 441
AspLEI GCGC 3 cut(s) 128, 274, 368
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 31, 310
AvaI CYCGRG 1 cut(s) 369
BanI GGYRCC 2 cut(s) 458, 827
BauI CACGAG 1 cut(s) 494
BbvI GCAGC 2 cut(s) 333, 867
BccI CCATC 1 cut(s) 28
BceAI ACGGC 2 cut(s) 76, 231
BciT130I CCWGG 1 cut(s) 66
BclI TGATCA 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 100, 240, 406
BfaI CTAG 1 cut(s) 824
BfoI RGCGCY 2 cut(s) 275, 369
BfuAI ACCTGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 544
BisI GCNGC 4 cut(s) 186, 307, 322, 856
BlsI GCNGC 4 cut(s) 187, 308, 323, 857
Bme1390I CCNGG 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 3 cut(s) 288, 460, 829
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 721
BsaHI GRCGYC 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 64, 462
BsaXI ACNNNNNCTCC 2 cut(s) 802, 832
Bse1I ACTGG 2 cut(s) 697, 754
BseBI CCWGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 64, 462
BseNI ACTGG 2 cut(s) 697, 754
BseRI GAGGAG 2 cut(s) 810, 889
BseXI GCAGC 2 cut(s) 333, 867
BshFI GGCC 2 cut(s) 63, 467
BshNI GGYRCC 2 cut(s) 458, 827
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 207, 239
BsmAI GTCTC 3 cut(s) 100, 240, 406
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 63, 467
Bso31I GGTCTC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 369
Bsp143I GATC 4 cut(s) 300, 544, 639, 724
BspACI CCGC 2 cut(s) 186, 306
BspANI GGCC 2 cut(s) 63, 467
BspLI GGNNCC 3 cut(s) 288, 460, 829
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 634, 719
BspT107I GGYRCC 2 cut(s) 458, 827
BspTNI GGTCTC 1 cut(s) 240
BsrI ACTGG 2 cut(s) 697, 754
BssECI CCNNGG 2 cut(s) 64, 462
BssMI GATC 4 cut(s) 300, 544, 639, 724
BssNI GRCGYC 1 cut(s) 172
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 4 cut(s) 31, 329, 358, 602
BstACI GRCGYC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 364, 469
BstDEI CTNAG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 37
BstH2I RGCGCY 2 cut(s) 275, 369
BstHHI GCGC 3 cut(s) 128, 274, 368
BstKTI GATC 4 cut(s) 303, 547, 642, 727
BstMAI GTCTC 3 cut(s) 100, 240, 406
BstMBI GATC 4 cut(s) 300, 544, 639, 724
BstMWI GCNNNNNNNGC 3 cut(s) 248, 374, 589
BstNI CCWGG 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 333, 867
BstX2I RGATCY 3 cut(s) 544, 639, 724
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 3 cut(s) 544, 639, 724
BsuRI GGCC 2 cut(s) 63, 467
BtgZI GCGATG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 364, 469
CaiI CAGNNNCTG 1 cut(s) 327
CfoI GCGC 3 cut(s) 128, 274, 368
Cfr13I GGNCC 1 cut(s) 62
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 354, 392
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 1 cut(s) 761
CviQI GTAC 2 cut(s) 354, 392
DdeI CTNAG 1 cut(s) 588
DpnI GATC 4 cut(s) 302, 546, 641, 726
DpnII GATC 4 cut(s) 300, 544, 639, 724
DraIII CACNNNGTG 1 cut(s) 458
Eco147I AGGCCT 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 240
Eco47III AGCGCT 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 1 cut(s) 764
FaiI YATR 9 cut(s) 311, 414, 482, 570, 579, 605, 762, 807, 910
FalI AAGNNNNNCTT 2 cut(s) 861, 893
FatI CATG 1 cut(s) 760
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 4 cut(s) 186, 307, 322, 856
Fsp4HI GCNGC 4 cut(s) 186, 307, 322, 856
FspBI CTAG 1 cut(s) 824
GlaI GCGC 3 cut(s) 127, 273, 367
GluI GCNGC 4 cut(s) 186, 307, 322, 856
HaeII RGCGCY 2 cut(s) 275, 369
HaeIII GGCC 2 cut(s) 63, 467
HapII CCGG 2 cut(s) 207, 239
HgaI GACGC 1 cut(s) 161
HhaI GCGC 3 cut(s) 128, 274, 368
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 1 cut(s) 764
Hin6I GCGC 3 cut(s) 126, 272, 366
HinP1I GCGC 3 cut(s) 126, 272, 366
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 5 cut(s) 54, 134, 154, 433, 677
HpaII CCGG 2 cut(s) 207, 239
HphI GGTGA 2 cut(s) 31, 310
Hpy166II GTNNAC 4 cut(s) 85, 199, 346, 392
Hpy188I TCNGA 3 cut(s) 19, 139, 180
Hpy188III TCNNGA 4 cut(s) 131, 290, 371, 738
Hpy8I GTNNAC 4 cut(s) 85, 199, 346, 392
Hpy99I CGWCG 4 cut(s) 50, 53, 62, 177
HpyAV CCTTC 4 cut(s) 291, 419, 794, 841
HpyCH4III ACNGT 4 cut(s) 31, 329, 358, 602
HpyCH4IV ACGT 2 cut(s) 87, 558
HpyCH4V TGCA 3 cut(s) 162, 488, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 374, 589
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 2 cut(s) 87, 558
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 1 cut(s) 764
HspAI GCGC 3 cut(s) 126, 272, 366
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 4 cut(s) 300, 544, 639, 724
LmnI GCTCC 2 cut(s) 133, 209
Lsp1109I GCAGC 2 cut(s) 333, 867
LweI GCATC 1 cut(s) 171
MaeI CTAG 1 cut(s) 824
MaeII ACGT 2 cut(s) 87, 558
MaeIII GTNAC 6 cut(s) 37, 155, 434, 596, 628, 745
MalI GATC 4 cut(s) 302, 546, 641, 726
MboI GATC 4 cut(s) 300, 544, 639, 724
MboII GAAGA 2 cut(s) 649, 734
MflI RGATCY 3 cut(s) 544, 639, 724
MluCI AATT 1 cut(s) 696
MlyI GAGTC 3 cut(s) 128, 163, 442
MmeI TCCRAC 2 cut(s) 42, 781
MseI TTAA 4 cut(s) 384, 441, 795, 866
MslI CAYNNNNRTG 3 cut(s) 32, 441, 789
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 207, 239
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 248, 374, 589
NdeII GATC 4 cut(s) 300, 544, 639, 724
NlaIII CATG 1 cut(s) 764
NlaIV GGNNCC 3 cut(s) 288, 460, 829
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 3 cut(s) 37, 155, 434
OliI CACNNNNGTG 1 cut(s) 789
PaeR7I CTCGAG 1 cut(s) 369
PceI AGGCCT 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PfeI GAWTC 2 cut(s) 54, 677
PkrI GCNGC 4 cut(s) 187, 308, 323, 857
PleI GAGTC 3 cut(s) 128, 162, 441
PpsI GAGTC 3 cut(s) 128, 162, 441
PshBI ATTAAT 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 3 cut(s) 288, 460, 829
PspPI GGNCC 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 327
PsuI RGATCY 3 cut(s) 544, 639, 724
RsaI GTAC 2 cut(s) 355, 393
RsaNI GTAC 2 cut(s) 354, 392
RseI CAYNNNNRTG 3 cut(s) 32, 441, 789
SaqAI TTAA 4 cut(s) 384, 441, 795, 866
SatI GCNGC 4 cut(s) 186, 307, 322, 856
Sau3AI GATC 4 cut(s) 300, 544, 639, 724
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 3 cut(s) 128, 163, 442
ScrFI CCNGG 1 cut(s) 66
SfaNI GCATC 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 369
SlaI CTCGAG 1 cut(s) 369
SmiMI CAYNNNNRTG 3 cut(s) 32, 441, 789
SmlI CTYRAG 2 cut(s) 369, 736
SmoI CTYRAG 2 cut(s) 369, 736
Sse9I AATT 1 cut(s) 696
SseBI AGGCCT 1 cut(s) 467
SsiI CCGC 2 cut(s) 186, 306
SspMI CTAG 1 cut(s) 824
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 4 cut(s) 31, 329, 358, 602
TaiI ACGT 2 cut(s) 90, 561
TaqI TCGA 2 cut(s) 57, 370
TasI AATT 1 cut(s) 696
TauI GCSGC 2 cut(s) 188, 309
TfiI GAWTC 2 cut(s) 54, 677
Tru1I TTAA 4 cut(s) 384, 441, 795, 866
Tru9I TTAA 4 cut(s) 384, 441, 795, 866
TscAI CASTG 1 cut(s) 164
TseFI GTSAC 3 cut(s) 37, 155, 434
TseI GCWGC 2 cut(s) 321, 855
Tsp45I GTSAC 3 cut(s) 37, 155, 434
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 164
VspI ATTAAT 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 369
XspI CTAG 1 cut(s) 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.