Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006620

Physical Location & Seq

Genomic Coordinates Forward (+)

9267260 .. 9269178

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGTCAAAAGTTTTGGGAGAATCAAGAAGATCGAGCGATGGTTGAATCCACCATAGGCTCTGAAGCTTGCGACTTTTTCATCTCAACAGCTTCAGCTTCCAACACTGCCTTGTCCAAGCTTGTCTCACCACCAAGTGATTCCAATCTCCAACAAGGGTTACGTCACGTTGTTGAAGGATCTGATTGGGATTATGCTCTTTTCTGGCTAGCGTCCAACGTTAATAGCTCTGATGGTTGTGTCTTGATCTGGGGAGATGGTCATTGCCGTGTCAAAAAGGGTGCTTCAGGTGAGGATTACTCTCAGCAAGATGAGATCAAAAGACGTGTGCTTCGCAAGCTTCACTTGTCGTTCGTTGGTTCAGATGAAGATCATCGTTTGGTGAAATCAGGAGCTCTTACTGATCTCGACATGTTTTATCTGGCTTCTTTGTACTTTTCCTTTAGGTGTGATACCAATAAGTACGGTCCTGCTGGAACCTATGTGTCTGGGAAGCCTCTTTGGGCTGCAGATTTGCCTAGCTGCTTGAGTTATTATAGGGTTAGGTCTTTCTTAGCTAGGTCAGCTGGTTTTCAGACTGTGTTGTCTGTACCAGTGAATTCTGGAGTTGTGGAGCTTGGTTCTTTAAGACATATTCCAGAAGATAAGAGTGTGATTGAGATGGTGAAATCAGTGTTTGGTGGGTCTGACTTTGTTCAGGCTAAAGAAGCTCCTAAAATCTTTGGTCGACAGCTGAGTCTTGGTGGAGCAAAACCTCGGTCTATGAGTATTAATTTCTCCCCGAAGACCGAGGATGACACGGGTTTCTCATTGGAATCGTATGAGGTGCAAGCGATCGGAGGCTCTAATCAAGTGTATGGTTATGAGCAAGGGAAAGATGAGACATTGTATCTAACTGACGAGCAAAAGCCGAGGAAGAGAGGGAGAAAACCAGCAAATGGAAGAGAAGAGGCTCTAAACCATGTGGAAGCGGAACGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCTTTGAGAGCGGTGGTGCCTAACATCTCCAAGATGGACAAGGCTTCGCTCCTTGCAGACGCAATCACTTACATCACGGATATGCAGAAGAAAATCAGGGTGTATGAAACAGAGAAGCAGATAATGAAGAGGAGGGAGAGTAATCAGATAACTCCAGCAGAGGTTGATTATCAACAGAGGCATGATGATGCAGTTGTAAGGCTAAGCTGTCCGTTGGAAACTCATCCAGTTTCAAAGGTGATACAAACGTTGAGGGAGAATGAAGTTATGCCTCATGATTCCAACGTGGCCATCACAGAGGAGGGTGTGGTTCACACATTCACTCTCCGGCCTCAGGGTGGCTGCACCGCTGAGCAGTTGAAGGACAAGCTCCTTGCCTCTCTATCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

467

Amino Acids

52.23

Weight (kDa)

6.4

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	50 - 226	7.5e-45	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	320 - 366	2.1e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16430
fragaria_vesca	FvH4_2g22150 FvH4_2g22150
malus_domestica	MD05G1202500.v1.1 MD05G1202900.v1.1 MD10G1190000.v1.1
prunus_persica	Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1
pyrus_communis	pycom05g18900 pycom05g18950 pycom10g16360 pycom10g16370
rosa_chinensis	RchiOBHm_Chr6g0288981
rosa_laevigata	RLG00000012333 RLG00000013932
rosa_multiflora	Rmu_sc0000666.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179620
rosa_rugosa	Rorug06G0199900
rosa_samantha	Rh6AG311600 Rh6BG318100 Rh6CG325000 Rh6DG310800
rosa_wichuraiana	Rw6G013790 Rw6G026880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	583, 735
AccB1I	GGYRCC	1 cut(s)	1027
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccBSI	CCGCTC	1 cut(s)	1022
AccI	GTMKAC	1 cut(s)	727
AciI	CCGC	3 cut(s)	971, 1022, 1359
AclI	AACGTT	2 cut(s)	219, 1259
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	1299
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	3 cut(s)	78, 84, 270
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	3 cut(s)	434, 464, 591
AfiI	CCNNNNNNNGG	3 cut(s)	938, 1345, 1349
AflIII	ACRYGT	2 cut(s)	325, 411
AgsI	TTSAA	4 cut(s)	47, 176, 1245, 1372
AjiI	CACGTC	1 cut(s)	326
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	2 cut(s)	130, 875
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	1299, 1340
ApeKI	GCWGC	3 cut(s)	506, 522, 1353
ApoI	RAATTY	1 cut(s)	598
ArsI	GACNNNNNNTTYG	4 cut(s)	315, 347, 743, 775
AseI	ATTAAT	1 cut(s)	771
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	5 cut(s)	120, 302, 394, 676, 1261
AsuNHI	GCTAGC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	1344
BaeI	ACNNNNGTAYC	2 cut(s)	1244, 1277
BalI	TGGCCA	1 cut(s)	1301
BanI	GGYRCC	1 cut(s)	1027
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	493, 509, 1340
BccI	CCATC	6 cut(s)	34, 227, 251, 655, 1039, 1310
BceAI	ACGGC	2 cut(s)	252, 992
BcoDI	GTCTC	2 cut(s)	130, 875
BfaI	CTAG	3 cut(s)	209, 519, 558
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	3 cut(s)	507, 523, 1354
BlpI	GCTNAGC	2 cut(s)	1214, 1362
BlsI	GCNGC	3 cut(s)	508, 524, 1355
Bme18I	GGWCC	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	478, 1029
BmsI	GCATC	1 cut(s)	1189
BmtI	GCTAGC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	2 cut(s)	624, 1149
Bpu1102I	GCTNAGC	2 cut(s)	1214, 1362
BpuEI	CTTGAG	1 cut(s)	547
BsaBI	GATNNNNATC	2 cut(s)	144, 369
BsaJI	CCNNGG	3 cut(s)	755, 789, 911
BsaXI	ACNNNNNCTCC	2 cut(s)	1135, 1165
Bsc4I	CCNNNNNNNGG	3 cut(s)	938, 1345, 1349
Bse1I	ACTGG	2 cut(s)	593, 1238
Bse21I	CCTNAGG	1 cut(s)	1344
Bse3DI	GCAATG	1 cut(s)	262
Bse8I	GATNNNNATC	2 cut(s)	144, 369
BseDI	CCNNGG	3 cut(s)	755, 789, 911
BseGI	GGATG	2 cut(s)	799, 1234
BseJI	GATNNNNATC	2 cut(s)	144, 369
BseLI	CCNNNNNNNGG	3 cut(s)	938, 1345, 1349
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	4 cut(s)	317, 725, 1353, 1358
BseNI	ACTGG	2 cut(s)	593, 1238
BseRI	GAGGAG	3 cut(s)	997, 1156, 1325
BseXI	GCAGC	3 cut(s)	493, 509, 1340
BsgI	GTGCAG	1 cut(s)	1339
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	1301, 1342
BshNI	GGYRCC	1 cut(s)	1027
BsiEI	CGRYCG	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	1339
BslI	CCNNNNNNNGG	3 cut(s)	938, 1345, 1349
BsmAI	GTCTC	2 cut(s)	130, 875
BsnI	GGCC	2 cut(s)	1301, 1342
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
Bsp1720I	GCTNAGC	2 cut(s)	1214, 1362
BspACI	CCGC	3 cut(s)	971, 1022, 1359
BspANI	GGCC	2 cut(s)	1301, 1342
BspCNI	CTCAG	4 cut(s)	316, 726, 1354, 1357
BspHI	TCATGA	1 cut(s)	1285
BspLI	GGNNCC	2 cut(s)	478, 1029
BspMAI	CTGCAG	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	1027
BsrBI	CCGCTC	1 cut(s)	1022
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	593, 1238
BssECI	CCNNGG	3 cut(s)	755, 789, 911
BssMI	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
Bst4CI	ACNGT	3 cut(s)	467, 580, 1401
Bst6I	CTCTTC	4 cut(s)	911, 937, 942, 1133
BstC8I	GCNNGC	4 cut(s)	70, 210, 338, 831
BstDEI	CTNAG	6 cut(s)	303, 553, 734, 1214, 1344, 1362
BstF5I	GGATG	2 cut(s)	799, 1234
BstKTI	GATC	7 cut(s)	34, 182, 249, 318, 373, 406, 837
BstMAI	GTCTC	2 cut(s)	130, 875
BstMBI	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 563, 707, 1019
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	3 cut(s)	493, 509, 1340
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
Bsu36I	CCTNAGG	1 cut(s)	1344
BsuRI	GGCC	2 cut(s)	1301, 1342
BtgZI	GCGATG	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	799, 1234
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 600, 678
Cac8I	GCNNGC	4 cut(s)	70, 210, 338, 831
CciI	TCATGA	1 cut(s)	1285
Cfr13I	GGNCC	1 cut(s)	467
CseI	GACGC	2 cut(s)	201, 1079
Csp6I	GTAC	3 cut(s)	433, 463, 590
CviAII	CATG	4 cut(s)	412, 962, 1193, 1286
CviQI	GTAC	3 cut(s)	433, 463, 590
DdeI	CTNAG	6 cut(s)	303, 553, 734, 1214, 1344, 1362
DpnI	GATC	7 cut(s)	33, 181, 248, 317, 372, 405, 836
DpnII	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
DraIII	CACNNNGTG	1 cut(s)	137
DrdI	GACNNNNNNGTC	2 cut(s)	583, 735
DseDI	GACNNNNNNGTC	2 cut(s)	583, 735
EaeI	YGGCCR	1 cut(s)	1299
Eam1104I	CTCTTC	4 cut(s)	911, 937, 942, 1133
EarI	CTCTTC	4 cut(s)	911, 937, 942, 1133
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	467
Eco53kI	GAGCTC	1 cut(s)	395
Eco57I	CTGAAG	3 cut(s)	78, 84, 270
Eco81I	CCTNAGG	1 cut(s)	1344
EcoICRI	GAGCTC	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	4 cut(s)	415, 965, 1196, 1289
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	4 cut(s)	411, 961, 1192, 1285
FblI	GTMKAC	1 cut(s)	727
Fnu4HI	GCNGC	3 cut(s)	507, 523, 1354
FokI	GGATG	2 cut(s)	806, 1221
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	507, 523, 1354
FspBI	CTAG	3 cut(s)	209, 519, 558
GluI	GCNGC	3 cut(s)	507, 523, 1354
GsuI	CTGGAG	2 cut(s)	624, 1149
HaeIII	GGCC	2 cut(s)	1301, 1342
HapII	CCGG	1 cut(s)	1339
HgaI	GACGC	2 cut(s)	201, 1079
Hin1II	CATG	4 cut(s)	415, 965, 1196, 1289
HincII	GTYRAC	1 cut(s)	728
HindII	GTYRAC	1 cut(s)	728
HindIII	AAGCTT	3 cut(s)	66, 119, 338
HinfI	GANTC	7 cut(s)	22, 47, 140, 736, 815, 1005, 1289
HpaII	CCGG	1 cut(s)	1339
HphI	GGTGA	5 cut(s)	120, 302, 394, 676, 1261
Hpy166II	GTNNAC	2 cut(s)	728, 1324
Hpy188I	TCNGA	8 cut(s)	64, 184, 232, 364, 576, 688, 839, 1158
Hpy188III	TCNNGA	7 cut(s)	26, 244, 390, 407, 603, 638, 1286
Hpy8I	GTNNAC	2 cut(s)	728, 1324
HpyAV	CCTTC	2 cut(s)	170, 1366
HpyCH4III	ACNGT	3 cut(s)	467, 580, 1401
HpyCH4IV	ACGT	6 cut(s)	163, 168, 219, 325, 1259, 1296
HpyCH4V	TGCA	6 cut(s)	509, 829, 1067, 1096, 1202, 1356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 563, 707, 1019
HpyF3I	CTNAG	6 cut(s)	303, 553, 734, 1214, 1344, 1362
HpySE526I	ACGT	6 cut(s)	163, 168, 219, 325, 1259, 1296
Hsp92II	CATG	4 cut(s)	415, 965, 1196, 1289
Kzo9I	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
LmnI	GCTCC	6 cut(s)	392, 613, 715, 746, 1065, 1386
Lsp1109I	GCAGC	3 cut(s)	493, 509, 1340
LweI	GCATC	1 cut(s)	1189
MaeI	CTAG	3 cut(s)	209, 519, 558
MaeII	ACGT	6 cut(s)	163, 168, 219, 325, 1259, 1296
MaeIII	GTNAC	2 cut(s)	159, 164
MalI	GATC	7 cut(s)	33, 181, 248, 317, 372, 405, 836
MbiI	CCGCTC	1 cut(s)	1022
MboI	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
MboII	GAAGA	9 cut(s)	41, 380, 653, 796, 928, 954, 959, 1111, 1150
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	1301
MluCI	AATT	2 cut(s)	598, 772
MluNI	TGGCCA	1 cut(s)	1301
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	5 cut(s)	126, 175, 240, 1206, 1317
Mox20I	TGGCCA	1 cut(s)	1301
MscI	TGGCCA	1 cut(s)	1301
MseI	TTAA	3 cut(s)	222, 626, 771
MslI	CAYNNNNRTG	3 cut(s)	267, 1091, 1197
Msp20I	TGGCCA	1 cut(s)	1301
MspA1I	CMGCKG	3 cut(s)	566, 733, 1361
MspI	CCGG	1 cut(s)	1339
MwoI	GCNNNNNNNGC	4 cut(s)	337, 563, 707, 1019
NdeII	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	4 cut(s)	415, 965, 1196, 1289
NlaIV	GGNNCC	2 cut(s)	478, 1029
NmeAIII	GCCGAG	1 cut(s)	936
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	415
PagI	TCATGA	1 cut(s)	1285
PciI	ACATGT	1 cut(s)	411
PfeI	GAWTC	6 cut(s)	22, 47, 140, 815, 1005, 1289
PflMI	CCANNNNNTGG	1 cut(s)	938
PkrI	GCNGC	3 cut(s)	508, 524, 1355
Ple19I	CGATCG	1 cut(s)	837
PleI	GAGTC	1 cut(s)	744
PpsI	GAGTC	1 cut(s)	744
PscI	ACATGT	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	397
Psp1406I	AACGTT	2 cut(s)	219, 1259
PspN4I	GGNNCC	2 cut(s)	478, 1029
PspPI	GGNCC	1 cut(s)	467
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	837
PvuII	CAGCTG	2 cut(s)	566, 733
RsaI	GTAC	3 cut(s)	434, 464, 591
RsaNI	GTAC	3 cut(s)	433, 463, 590
RseI	CAYNNNNRTG	3 cut(s)	267, 1091, 1197
SacI	GAGCTC	1 cut(s)	397
SalI	GTCGAC	1 cut(s)	726
SaqAI	TTAA	3 cut(s)	222, 626, 771
SatI	GCNGC	3 cut(s)	507, 523, 1354
Sau3AI	GATC	7 cut(s)	31, 179, 246, 315, 370, 403, 834
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	745
SduI	GDGCHC	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	1189
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	3 cut(s)	267, 1091, 1197
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	2 cut(s)	598, 772
SsiI	CCGC	3 cut(s)	971, 1022, 1359
SspMI	CTAG	3 cut(s)	209, 519, 558
SstI	GAGCTC	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	467, 580, 1401
TaiI	ACGT	6 cut(s)	166, 171, 222, 328, 1262, 1299
TaqI	TCGA	3 cut(s)	34, 408, 727
TaqII	GACCGA	2 cut(s)	747, 803
TasI	AATT	2 cut(s)	598, 772
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	6 cut(s)	22, 47, 140, 815, 1005, 1289
Tru1I	TTAA	3 cut(s)	222, 626, 771
Tru9I	TTAA	3 cut(s)	222, 626, 771
TscAI	CASTG	3 cut(s)	112, 600, 678
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	3 cut(s)	506, 522, 1353
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	5 cut(s)	70, 381, 1131, 1151, 1287
TspGWI	ACGGA	2 cut(s)	1103, 1212
TspRI	CASTG	3 cut(s)	112, 600, 678
Van91I	CCANNNNNTGG	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	467
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	727
XspI	CTAG	3 cut(s)	209, 519, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.