Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006620

Physical Location & Seq

Genomic Coordinates Reverse (-)

52184363 .. 52186951

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGGTGAGAAGCTTTGGGTGAATGAAGAAGAAAAGGTCATATTGGAGTCAGTACTAGGCACCGAAGCGTGCCAGGTGTTGATCTCATTGGCTTCGGAGAACTTGTTGTCCGACTTGGCTAGGCCTCCGGGACAATTGGGAGTGCAGCAGGGGCTGTCCCAGCTTGTCCAAGGGTCCAGTTGGGATTATGCCGTCTTCTGGCAGGTTGTGGGATTGAAATCTGGTGCAGCTGCCTTGATTTGGGGCGATGGACATTGCAGAGACAGCAAGGGTGGTGGAGTTGGAGACGAGAGTTCTAGTAGAGATAGCAACTTGGAGGGAGTGCAGAAGAAGAATGTGGAGGTGAGGAAGTGGGTGCTTGGGAAGCTCCACTCATGTTTCGGTGGTTCGGGTGAGGATAACTATGTGAGGAGGTTGGATCGGTTGTCAGATGTGGAAATGTTTTACCTTACTTCAATGTACTTTAAATTTCAACTTGATTCACCGTATGGTCCTGGGGAGTCGTACAAGTCTTGTAAATCAATTTGGGTTTCAAATGTTGCTAGTTGCTTACATCATTACCAGTCAAGAACATTTTTAGCTAGATTGGCAGGGTTCCAAACAGTGGTGTTTGTACCTATGAAATCAGGAGTTGTGGAGCTTGGTTCAATCAAATCAATTCCGGAAGAACAGAATATTGTGGATGTGGTCAGAAGTGTATTTGGGGAATCTAGCTCTGTTCAAGCAAAGGTAGAGACTGACTCTTCGTTTCCTTCAGAATCTTTTGACTTACAAGCAATAGGCACTTCAAACGGATGTCGAACTGAGGATAATGAAGTTAAACTGTTTCCGCACTTGAGCCAAATTATGTCTGGGAATTTCAGTTCTACAGCTGGTGTTTCAAGTTCAGAGCTGCCTAAAGACGAGTCATCGGCACAAATTGATGAAAGGAAACCTAGAAAGAGAGGGAGAAAGCCTGCCAATGGAAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGGCGTGAGAAGCTTAACCAGCGGTTTTATGCACTTAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTCCTTGGTGATGCCATTACCTACATCAACGATCTCCAGATGAAGATCAGGGTCATGGAAACTGAGAAGCAGATGGGAAACAGCAGCCAAATGCAGTTCCCGGTTCCAGAGATTGATTTCCAGGAACGGCATGAGGATGCTGTTGTGAGGATGAACTGCCCACTGGATTCTCACCCGGTTTCTGACGTCATCAGAACACTCAAGGAACATAACATTGTAGCTCAAGATACTAATGTTTCCGTAACAGACGATGACACAGTTATTCATACATTCTCCATTCATACTCAAGGTGGTGATGCCGAGCAGTTAAAGGAGAAGCTGGTGGCATCTCTTTCAAAATCATCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

477

Amino Acids

52.86

Weight (kDa)

5.52

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	49 - 234	8.3e-46	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	328 - 374	2.3e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16430
fragaria_vesca	FvH4_2g22150 FvH4_2g22150
malus_domestica	MD05G1202500.v1.1 MD05G1202900.v1.1 MD10G1190000.v1.1
prunus_persica	Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1
pyrus_communis	pycom05g18900 pycom05g18950 pycom10g16360 pycom10g16370
rosa_chinensis	RchiOBHm_Chr6g0288981
rosa_laevigata	RLG00000012333 RLG00000013932
rosa_multiflora	Rmu_sc0000666.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179620
rosa_rugosa	Rorug06G0199900
rosa_samantha	Rh6AG311600 Rh6BG318100 Rh6CG325000 Rh6DG310800
rosa_wichuraiana	Rw6G013790 Rw6G026880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1272
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccBSI	CCGCTC	1 cut(s)	1000
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	3 cut(s)	830, 1000, 1027
AclWI	GGATC	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	467, 856
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	1269
AfaI	GTAC	4 cut(s)	54, 461, 506, 615
AfiI	CCNNNNNNNGG	4 cut(s)	198, 240, 604, 962
AjnI	CCWGG	3 cut(s)	72, 493, 1203
AloI	GAACNNNNNNTCC	4 cut(s)	92, 124, 847, 879
Alw26I	GTCTC	3 cut(s)	255, 279, 728
AlwI	GGATC	1 cut(s)	426
AlwNI	CAGNNNCTG	1 cut(s)	154
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	5 cut(s)	145, 227, 230, 892, 1167
ApoI	RAATTY	2 cut(s)	467, 856
ArsI	GACNNNNNNTTYG	2 cut(s)	727, 759
AspS9I	GGNCC	2 cut(s)	174, 491
AsuC2I	CCSGG	3 cut(s)	129, 1184, 1259
AsuHPI	GGTGA	8 cut(s)	17, 31, 355, 404, 474, 1103, 1247, 1388
AvaII	GGWCC	2 cut(s)	174, 491
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	157, 217, 239, 879, 1179
BccI	CCATC	3 cut(s)	242, 1063, 1150
BceAI	ACGGC	2 cut(s)	176, 1226
BciT130I	CCWGG	3 cut(s)	74, 495, 1205
BcnI	CCSGG	3 cut(s)	129, 1184, 1259
BcoDI	GTCTC	3 cut(s)	255, 279, 728
BfaI	CTAG	7 cut(s)	56, 120, 297, 543, 582, 711, 936
BfmI	CTRYAG	1 cut(s)	867
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	6 cut(s)	146, 228, 231, 893, 1001, 1168
BlsI	GCNGC	6 cut(s)	147, 229, 232, 894, 1002, 1169
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	6 cut(s)	74, 129, 495, 1184, 1205, 1259
Bme18I	GGWCC	2 cut(s)	174, 491
BmgT120I	GGNCC	2 cut(s)	174, 491
BmiI	GGNNCC	4 cut(s)	61, 175, 596, 1188
BmrFI	CCNGG	6 cut(s)	74, 129, 495, 1184, 1205, 1259
BmsI	GCATC	4 cut(s)	1084, 1210, 1369, 1418
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpmI	CTGGAG	1 cut(s)	1103
BpuEI	CTTGAG	4 cut(s)	856, 1268, 1290, 1353
BpuMI	CCSGG	3 cut(s)	129, 1184, 1259
BsaBI	GATNNNNATC	2 cut(s)	217, 1127
BsaHI	GRCGYC	1 cut(s)	1269
BsaJI	CCNNGG	3 cut(s)	169, 494, 1087
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 240, 604, 962
Bse1I	ACTGG	3 cut(s)	177, 562, 1251
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	2 cut(s)	217, 1127
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	3 cut(s)	74, 495, 1205
BseDI	CCNNGG	3 cut(s)	169, 494, 1087
BseGI	GGATG	5 cut(s)	688, 800, 1225, 1239, 1424
BseJI	GATNNNNATC	2 cut(s)	217, 1127
BseLI	CCNNNNNNNGG	4 cut(s)	198, 240, 604, 962
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	795, 1137
BseNI	ACTGG	3 cut(s)	177, 562, 1251
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	5 cut(s)	157, 217, 239, 879, 1179
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	3 cut(s)	164, 246, 344
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	59
BsiSI	CCGG	4 cut(s)	128, 662, 1184, 1259
BslFI	GGGAC	2 cut(s)	142, 144
BslI	CCNNNNNNNGG	4 cut(s)	198, 240, 604, 962
BsmAI	GTCTC	3 cut(s)	255, 279, 728
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	142, 144
BsnI	GGCC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	81, 418, 1114, 1128
BspACI	CCGC	3 cut(s)	830, 1000, 1027
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	796, 1138
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	61, 175, 596, 1188
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	1000
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	177, 562, 1251
BssECI	CCNNGG	3 cut(s)	169, 494, 1087
BssMI	GATC	4 cut(s)	81, 418, 1114, 1128
BssNI	GRCGYC	1 cut(s)	1269
BssT1I	CCWWGG	2 cut(s)	169, 1087
Bst2UI	CCWGG	3 cut(s)	74, 495, 1205
Bst4CI	ACNGT	4 cut(s)	486, 604, 825, 1342
Bst6I	CTCTTC	2 cut(s)	748, 961
BstACI	GRCGYC	1 cut(s)	1269
BstC8I	GCNNGC	2 cut(s)	70, 957
BstDEI	CTNAG	3 cut(s)	804, 1040, 1146
BstF5I	GGATG	5 cut(s)	688, 800, 1225, 1239, 1424
BstKTI	GATC	4 cut(s)	84, 421, 1117, 1131
BstMAI	GTCTC	3 cut(s)	255, 279, 728
BstMBI	GATC	4 cut(s)	81, 418, 1114, 1128
BstMWI	GCNNNNNNNGC	9 cut(s)	151, 160, 264, 364, 587, 1006, 1015, 1024, 1043
BstNI	CCWGG	3 cut(s)	74, 495, 1205
BstSCI	CCNGG	6 cut(s)	72, 127, 493, 1182, 1203, 1257
BstSFI	CTRYAG	1 cut(s)	867
BstV1I	GCAGC	5 cut(s)	157, 217, 239, 879, 1179
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	5 cut(s)	688, 800, 1225, 1239, 1424
BtsIMutI	CAGTG	2 cut(s)	609, 1244
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	70, 957
CaiI	CAGNNNCTG	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	174, 491
Csp6I	GTAC	4 cut(s)	53, 460, 505, 614
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	5 cut(s)	375, 986, 1138, 1214, 1429
CviQI	GTAC	4 cut(s)	53, 460, 505, 614
DdeI	CTNAG	3 cut(s)	804, 1040, 1146
DpnI	GATC	4 cut(s)	83, 420, 1116, 1130
DpnII	GATC	4 cut(s)	81, 418, 1114, 1128
DraI	TTTAAA	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	748, 961
EarI	CTCTTC	2 cut(s)	748, 961
Eco130I	CCWWGG	2 cut(s)	169, 1087
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	174, 491
Eco57I	CTGAAG	1 cut(s)	738
EcoRII	CCWGG	3 cut(s)	72, 493, 1203
EcoT14I	CCWWGG	2 cut(s)	169, 1087
ErhI	CCWWGG	2 cut(s)	169, 1087
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	5 cut(s)	378, 989, 1141, 1217, 1432
FaqI	GGGAC	2 cut(s)	142, 144
FatI	CATG	5 cut(s)	374, 985, 1137, 1213, 1428
Fnu4HI	GCNGC	6 cut(s)	146, 228, 231, 893, 1001, 1168
FokI	GGATG	5 cut(s)	695, 807, 1232, 1246, 1411
Fsp4HI	GCNGC	6 cut(s)	146, 228, 231, 893, 1001, 1168
FspBI	CTAG	7 cut(s)	56, 120, 297, 543, 582, 711, 936
GluI	GCNGC	6 cut(s)	146, 228, 231, 893, 1001, 1168
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	1103
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	4 cut(s)	128, 662, 1184, 1259
Hin1I	GRCGYC	1 cut(s)	1269
Hin1II	CATG	5 cut(s)	378, 989, 1141, 1217, 1432
HindIII	AAGCTT	2 cut(s)	11, 1016
HinfI	GANTC	9 cut(s)	47, 479, 500, 707, 740, 758, 905, 982, 1250
HpaII	CCGG	4 cut(s)	128, 662, 1184, 1259
HphI	GGTGA	8 cut(s)	17, 31, 355, 404, 474, 1103, 1247, 1388
Hpy188I	TCNGA	8 cut(s)	97, 112, 430, 692, 757, 889, 1267, 1277
Hpy188III	TCNNGA	6 cut(s)	567, 627, 662, 1120, 1190, 1307
HpyAV	CCTTC	1 cut(s)	762
HpyCH4III	ACNGT	4 cut(s)	486, 604, 825, 1342
HpyCH4IV	ACGT	1 cut(s)	1269
HpyCH4V	TGCA	6 cut(s)	145, 227, 258, 325, 1037, 1177
HpyF10VI	GCNNNNNNNGC	9 cut(s)	151, 160, 264, 364, 587, 1006, 1015, 1024, 1043
HpyF3I	CTNAG	3 cut(s)	804, 1040, 1146
HpySE526I	ACGT	1 cut(s)	1269
Hsp92I	GRCGYC	1 cut(s)	1269
Hsp92II	CATG	5 cut(s)	378, 989, 1141, 1217, 1432
Kpn2I	TCCGGA	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	81, 418, 1114, 1128
LmnI	GCTCC	2 cut(s)	372, 637
Lsp1109I	GCAGC	5 cut(s)	157, 217, 239, 879, 1179
LweI	GCATC	4 cut(s)	1084, 1210, 1369, 1418
MaeI	CTAG	7 cut(s)	56, 120, 297, 543, 582, 711, 936
MaeII	ACGT	1 cut(s)	1269
MaeIII	GTNAC	1 cut(s)	1324
MalI	GATC	4 cut(s)	83, 420, 1116, 1130
MbiI	CCGCTC	1 cut(s)	1000
MboI	GATC	4 cut(s)	81, 418, 1114, 1128
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	7 cut(s)	134, 467, 522, 657, 843, 856, 918
MlyI	GAGTC	4 cut(s)	56, 509, 734, 914
MmeI	TCCRAC	3 cut(s)	135, 262, 396
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	4 cut(s)	465, 819, 1020, 1391
MslI	CAYNNNNRTG	1 cut(s)	1218
MspA1I	CMGCKG	3 cut(s)	230, 872, 1027
MspI	CCGG	4 cut(s)	128, 662, 1184, 1259
MspR9I	CCNGG	6 cut(s)	74, 129, 495, 1184, 1205, 1259
MunI	CAATTG	1 cut(s)	134
MvaI	CCWGG	3 cut(s)	74, 495, 1205
MwoI	GCNNNNNNNGC	9 cut(s)	151, 160, 264, 364, 587, 1006, 1015, 1024, 1043
NciI	CCSGG	3 cut(s)	129, 1184, 1259
NdeII	GATC	4 cut(s)	81, 418, 1114, 1128
NlaIII	CATG	5 cut(s)	378, 989, 1141, 1217, 1432
NlaIV	GGNNCC	4 cut(s)	61, 175, 596, 1188
NmeAIII	GCCGAG	1 cut(s)	1408
PceI	AGGCCT	1 cut(s)	124
PfeI	GAWTC	5 cut(s)	479, 707, 758, 982, 1250
PflMI	CCANNNNNTGG	1 cut(s)	604
PfoI	TCCNGGA	2 cut(s)	127, 1203
PkrI	GCNGC	6 cut(s)	147, 229, 232, 894, 1002, 1169
PleI	GAGTC	4 cut(s)	55, 508, 734, 913
PpsI	GAGTC	4 cut(s)	55, 508, 734, 913
Psp6I	CCWGG	3 cut(s)	72, 493, 1203
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	3 cut(s)	72, 493, 1203
PspN4I	GGNNCC	4 cut(s)	61, 175, 596, 1188
PspPI	GGNCC	2 cut(s)	174, 491
PstNI	CAGNNNCTG	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	230, 872
RsaI	GTAC	4 cut(s)	54, 461, 506, 615
RsaNI	GTAC	4 cut(s)	53, 460, 505, 614
RseI	CAYNNNNRTG	1 cut(s)	1218
SaqAI	TTAA	4 cut(s)	465, 819, 1020, 1391
SatI	GCNGC	6 cut(s)	146, 228, 231, 893, 1001, 1168
Sau3AI	GATC	4 cut(s)	81, 418, 1114, 1128
Sau96I	GGNCC	2 cut(s)	174, 491
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	4 cut(s)	56, 509, 734, 914
ScrFI	CCNGG	6 cut(s)	74, 129, 495, 1184, 1205, 1259
SfaNI	GCATC	4 cut(s)	1084, 1210, 1369, 1418
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	2 cut(s)	174, 491
SmiMI	CAYNNNNRTG	1 cut(s)	1218
SmlI	CTYRAG	4 cut(s)	835, 1283, 1305, 1368
SmoI	CTYRAG	4 cut(s)	835, 1283, 1305, 1368
Sse9I	AATT	7 cut(s)	134, 467, 522, 657, 843, 856, 918
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	3 cut(s)	830, 1000, 1027
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	7 cut(s)	56, 120, 297, 543, 582, 711, 936
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	6 cut(s)	72, 127, 493, 1182, 1203, 1257
StyI	CCWWGG	2 cut(s)	169, 1087
TaaI	ACNGT	4 cut(s)	486, 604, 825, 1342
TaiI	ACGT	1 cut(s)	1272
TaqI	TCGA	2 cut(s)	799, 1064
TasI	AATT	7 cut(s)	134, 467, 522, 657, 843, 856, 918
TatI	WGTACW	2 cut(s)	52, 459
TauI	GCSGC	1 cut(s)	1003
TfiI	GAWTC	5 cut(s)	479, 707, 758, 982, 1250
Tru1I	TTAA	4 cut(s)	465, 819, 1020, 1391
Tru9I	TTAA	4 cut(s)	465, 819, 1020, 1391
TscAI	CASTG	2 cut(s)	609, 1251
TseI	GCWGC	5 cut(s)	145, 227, 230, 892, 1167
TspDTI	ATGAA	8 cut(s)	39, 635, 828, 939, 1139, 1250, 1337, 1352
TspGWI	ACGGA	2 cut(s)	807, 1312
TspRI	CASTG	2 cut(s)	609, 1251
Van91I	CCANNNNNTGG	1 cut(s)	604
VpaK11BI	GGWCC	2 cut(s)	174, 491
XapI	RAATTY	2 cut(s)	467, 856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XspI	CTAG	7 cut(s)	56, 120, 297, 543, 582, 711, 936
ZraI	GACGTC	1 cut(s)	1270
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.