Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006620

Physical Location & Seq

Genomic Coordinates Reverse (-)

25466492 .. 25467846

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGTGAGAAGCTTGGGGTGAATGAGGAAGAAAAGGTCATAGTGGAGTCAGTACTAGGCGCCGAAGCGTGCCAGGTGTTGATCTCATTGGCTTTGGAGAACTTGTTGTCCGTCTTGGCTAGGCCTCCGGGACAATTGGTAGTGCAGCTGGGGCTGTCCCAGCTTCTCCAAGGGTCCAGTTGGGATTACGCTGTCTTCTGGCAGGTTGTGGGATTGAAATCTGGTGGAGCTGCCTTGATTTGGGGTGATGGACATTGCAGAGACACCAAGGGTGGTGGGGTTGGTGACGAGAGTTCTAGTAGAGATAGCAACTTGAAGGGAGTGCAGAAGAAGAATGTGGAGTCGAGATCGTTTTTAGCTAGATTGGCAGGGTTCCAAACAGTGGTGTTTGTACCTATGAAATCAGGAGTTGTGGAGCTTGGTTCAGTCAAATCAATTCCGGAAGAACATAATATGGTGGATGTGGTCAGAAGTGTATTTGGGGAATCTAGCTCTGTTCAAGCAAAGGTAGAGACTGACTCGTCATTTCCTTCAGAATCTTTTGACTTACAAGCAATAGGCACTTCAAACGGATGTCGAACTGAGGATAATGAAGTTAAACTGTTTCCGCACTTGAGCCAAATTATGTCTGGGAATTTCAGTTCTACAGCTGGCGTTTCAAGTTCAGAGCGGCCTAAAGACAAGTCATTGGCACAAATTGATGAAAGGAAACCTAGAAAGAGAGGGAGAAAGTCTGCCAATGGAAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGTCGTGAGAAGCTTAACCAGCGGTTTTACACCCTTAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTCCTTTGTGATGCCATTACCTACATCAACGATCTCCAGATGAAGATCAGGGTCATGGAAACTGAGAAGCAGATGGGAAACAGCAGCCAAATGCAGTTCCTGGTTCCAGTGATTGATTTCCAGGAACGGCACGAGGATGCTGTTGTGAGGATGAACTGCCCATTGGATTCTCACCTGGTTTCTGACATCATCAGAACACTTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

356

Amino Acids

39.14

Weight (kDa)

5.82

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	50 - 99	3.7e-11	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	110 - 160	3.1e-14	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	254 - 300	1.7e-09	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16430
fragaria_vesca	FvH4_2g22150 FvH4_2g22150
malus_domestica	MD05G1202500.v1.1 MD05G1202900.v1.1 MD10G1190000.v1.1
prunus_persica	Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1
pyrus_communis	pycom05g18900 pycom05g18950 pycom10g16360 pycom10g16370
rosa_chinensis	RchiOBHm_Chr6g0288981
rosa_laevigata	RLG00000012333 RLG00000013932
rosa_multiflora	Rmu_sc0000666.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179620
rosa_rugosa	Rorug06G0199900
rosa_samantha	Rh6AG311600 Rh6BG318100 Rh6CG325000 Rh6DG310800
rosa_wichuraiana	Rw6G013790 Rw6G026880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	520
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	2 cut(s)	670, 778
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	4 cut(s)	608, 670, 778, 805
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	54, 393
AfiI	CCNNNNNNNGG	2 cut(s)	240, 382
AgsI	TTSAA	6 cut(s)	217, 316, 500, 567, 660, 760
AjnI	CCWGG	4 cut(s)	72, 960, 981, 1035
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AloI	GAACNNNNNNTCC	4 cut(s)	92, 124, 625, 657
Alw26I	GTCTC	2 cut(s)	255, 506
AlwNI	CAGNNNCTG	1 cut(s)	961
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	122, 671
ApeKI	GCWGC	3 cut(s)	145, 230, 945
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	5 cut(s)	17, 31, 257, 296, 1025
AvaII	GGWCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	992
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	3 cut(s)	157, 217, 957
BccI	CCATC	3 cut(s)	242, 841, 928
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	4 cut(s)	74, 962, 983, 1037
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	255, 506
BfaI	CTAG	6 cut(s)	56, 120, 297, 360, 489, 714
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	5 cut(s)	146, 231, 671, 779, 946
BlsI	GCNGC	5 cut(s)	147, 232, 672, 780, 947
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	5 cut(s)	74, 129, 962, 983, 1037
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	4 cut(s)	61, 175, 374, 966
BmrFI	CCNGG	5 cut(s)	74, 129, 962, 983, 1037
BmsI	GCATC	2 cut(s)	862, 988
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	881
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	2 cut(s)	217, 905
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	169, 267
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 382
Bse1I	ACTGG	2 cut(s)	177, 968
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	2 cut(s)	217, 905
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	4 cut(s)	74, 962, 983, 1037
BseDI	CCNNGG	2 cut(s)	169, 267
BseGI	GGATG	4 cut(s)	466, 578, 1003, 1017
BseJI	GATNNNNATC	2 cut(s)	217, 905
BseLI	CCNNNNNNNGG	2 cut(s)	240, 382
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	573, 915
BseNI	ACTGG	2 cut(s)	177, 968
BseXI	GCAGC	3 cut(s)	157, 217, 957
BseYI	CCCAGC	2 cut(s)	148, 159
BsgI	GTGCAG	2 cut(s)	164, 344
BshFI	GGCC	2 cut(s)	124, 673
BshNI	GGYRCC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	128, 440
BslFI	GGGAC	2 cut(s)	142, 144
BslI	CCNNNNNNNGG	2 cut(s)	240, 382
BsmAI	GTCTC	2 cut(s)	255, 506
BsmFI	GGGAC	2 cut(s)	142, 144
BsnI	GGCC	2 cut(s)	124, 673
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	4 cut(s)	81, 347, 892, 906
BspACI	CCGC	4 cut(s)	608, 670, 778, 805
BspANI	GGCC	2 cut(s)	124, 673
BspCNI	CTCAG	2 cut(s)	574, 916
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	4 cut(s)	61, 175, 374, 966
BspMI	ACCTGC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	2 cut(s)	670, 778
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	2 cut(s)	177, 968
BssECI	CCNNGG	2 cut(s)	169, 267
BssMI	GATC	4 cut(s)	81, 347, 892, 906
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	992
BssT1I	CCWWGG	2 cut(s)	169, 267
Bst2BI	CACGAG	1 cut(s)	992
Bst2UI	CCWGG	4 cut(s)	74, 962, 983, 1037
Bst4CI	ACNGT	2 cut(s)	382, 603
Bst6I	CTCTTC	1 cut(s)	739
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	2 cut(s)	70, 652
BstDEI	CTNAG	3 cut(s)	582, 818, 924
BstF5I	GGATG	4 cut(s)	466, 578, 1003, 1017
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	4 cut(s)	84, 350, 895, 909
BstMAI	GTCTC	2 cut(s)	255, 506
BstMBI	GATC	4 cut(s)	81, 347, 892, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 160, 365, 802
BstNI	CCWGG	4 cut(s)	74, 962, 983, 1037
BstSCI	CCNGG	5 cut(s)	72, 127, 960, 981, 1035
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	3 cut(s)	157, 217, 957
BstV2I	GAAGAC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	124, 673
BtsCI	GGATG	4 cut(s)	466, 578, 1003, 1017
BtsIMutI	CAGTG	2 cut(s)	387, 975
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	70, 652
CaiI	CAGNNNCTG	1 cut(s)	961
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	1035
Csp6I	GTAC	2 cut(s)	53, 392
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	2 cut(s)	764, 916
CviQI	GTAC	2 cut(s)	53, 392
DdeI	CTNAG	3 cut(s)	582, 818, 924
DinI	GGCGCC	1 cut(s)	61
DpnI	GATC	4 cut(s)	83, 349, 894, 908
DpnII	GATC	4 cut(s)	81, 347, 892, 906
DrdI	GACNNNNNNGTC	1 cut(s)	520
DseDI	GACNNNNNNGTC	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Eco130I	CCWWGG	2 cut(s)	169, 267
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	516
EcoRII	CCWGG	4 cut(s)	72, 960, 981, 1035
EcoT14I	CCWWGG	2 cut(s)	169, 267
EgeI	GGCGCC	1 cut(s)	61
EheI	GGCGCC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	169, 267
FaeI	CATG	2 cut(s)	767, 919
FaiI	YATR	8 cut(s)	41, 398, 450, 455, 626, 765, 839, 917
FaqI	GGGAC	2 cut(s)	142, 144
FatI	CATG	2 cut(s)	763, 915
Fnu4HI	GCNGC	5 cut(s)	146, 231, 671, 779, 946
FokI	GGATG	4 cut(s)	473, 585, 1010, 1024
Fsp4HI	GCNGC	5 cut(s)	146, 231, 671, 779, 946
FspBI	CTAG	6 cut(s)	56, 120, 297, 360, 489, 714
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	5 cut(s)	146, 231, 671, 779, 946
GsaI	CCCAGC	2 cut(s)	152, 163
GsuI	CTGGAG	1 cut(s)	881
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	124, 673
HapII	CCGG	2 cut(s)	128, 440
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	767, 919
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	11, 794
HinfI	GANTC	8 cut(s)	47, 341, 485, 518, 536, 760, 784, 1028
HpaII	CCGG	2 cut(s)	128, 440
HphI	GGTGA	5 cut(s)	17, 31, 257, 296, 1025
Hpy188I	TCNGA	5 cut(s)	470, 535, 667, 1045, 1055
Hpy188III	TCNNGA	5 cut(s)	345, 405, 440, 788, 898
HpyAV	CCTTC	2 cut(s)	310, 540
HpyCH4III	ACNGT	2 cut(s)	382, 603
HpyCH4V	TGCA	4 cut(s)	145, 258, 325, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 160, 365, 802
HpyF3I	CTNAG	3 cut(s)	582, 818, 924
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	767, 919
HspAI	GCGC	1 cut(s)	60
KasI	GGCGCC	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	81, 347, 892, 906
LmnI	GCTCC	2 cut(s)	227, 415
Lsp1109I	GCAGC	3 cut(s)	157, 217, 957
LweI	GCATC	2 cut(s)	862, 988
MabI	ACCWGGT	1 cut(s)	1035
MaeI	CTAG	6 cut(s)	56, 120, 297, 360, 489, 714
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	4 cut(s)	83, 349, 894, 908
MbiI	CCGCTC	2 cut(s)	670, 778
MboI	GATC	4 cut(s)	81, 347, 892, 906
MboII	GAAGA	9 cut(s)	41, 187, 340, 343, 455, 756, 761, 856, 916
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	5 cut(s)	134, 435, 621, 634, 696
Mly113I	GGCGCC	1 cut(s)	60
MlyI	GAGTC	4 cut(s)	56, 350, 512, 793
MnlI	CCTC	8 cut(s)	19, 135, 577, 716, 868, 988, 1002, 1057
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	2 cut(s)	597, 798
MslI	CAYNNNNRTG	1 cut(s)	996
MspA1I	CMGCKG	3 cut(s)	148, 650, 805
MspI	CCGG	2 cut(s)	128, 440
MspR9I	CCNGG	5 cut(s)	74, 129, 962, 983, 1037
MunI	CAATTG	1 cut(s)	134
MvaI	CCWGG	4 cut(s)	74, 962, 983, 1037
MwoI	GCNNNNNNNGC	4 cut(s)	151, 160, 365, 802
NarI	GGCGCC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	81, 347, 892, 906
NlaIII	CATG	2 cut(s)	767, 919
NlaIV	GGNNCC	4 cut(s)	61, 175, 374, 966
NmuCI	GTSAC	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	124
PfeI	GAWTC	4 cut(s)	485, 536, 760, 1028
PflMI	CCANNNNNTGG	1 cut(s)	382
PfoI	TCCNGGA	2 cut(s)	127, 981
PkrI	GCNGC	5 cut(s)	147, 232, 672, 780, 947
PleI	GAGTC	4 cut(s)	55, 349, 512, 792
PluTI	GGCGCC	1 cut(s)	63
PpsI	GAGTC	4 cut(s)	55, 349, 512, 792
Psp6I	CCWGG	4 cut(s)	72, 960, 981, 1035
PspFI	CCCAGC	2 cut(s)	148, 159
PspGI	CCWGG	4 cut(s)	72, 960, 981, 1035
PspN4I	GGNNCC	4 cut(s)	61, 175, 374, 966
PspPI	GGNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	961
PvuII	CAGCTG	2 cut(s)	148, 650
RsaI	GTAC	2 cut(s)	54, 393
RsaNI	GTAC	2 cut(s)	53, 392
RseI	CAYNNNNRTG	1 cut(s)	996
SaqAI	TTAA	2 cut(s)	597, 798
SatI	GCNGC	5 cut(s)	146, 231, 671, 779, 946
Sau3AI	GATC	4 cut(s)	81, 347, 892, 906
Sau96I	GGNCC	1 cut(s)	174
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	4 cut(s)	56, 350, 512, 793
ScrFI	CCNGG	5 cut(s)	74, 129, 962, 983, 1037
SexAI	ACCWGGT	1 cut(s)	1035
SfaNI	GCATC	2 cut(s)	862, 988
SfcI	CTRYAG	1 cut(s)	645
SfoI	GGCGCC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	996
SmlI	CTYRAG	2 cut(s)	613, 1061
SmoI	CTYRAG	2 cut(s)	613, 1061
Sse9I	AATT	5 cut(s)	134, 435, 621, 634, 696
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	4 cut(s)	608, 670, 778, 805
SspDI	GGCGCC	1 cut(s)	59
SspMI	CTAG	6 cut(s)	56, 120, 297, 360, 489, 714
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	5 cut(s)	72, 127, 960, 981, 1035
StyI	CCWWGG	2 cut(s)	169, 267
TaaI	ACNGT	2 cut(s)	382, 603
TaqI	TCGA	3 cut(s)	344, 577, 842
TasI	AATT	5 cut(s)	134, 435, 621, 634, 696
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	2 cut(s)	673, 781
TfiI	GAWTC	4 cut(s)	485, 536, 760, 1028
Tru1I	TTAA	2 cut(s)	597, 798
Tru9I	TTAA	2 cut(s)	597, 798
TscAI	CASTG	2 cut(s)	387, 975
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	145, 230, 945
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	5 cut(s)	413, 606, 717, 917, 1028
TspGWI	ACGGA	2 cut(s)	100, 585
TspRI	CASTG	2 cut(s)	387, 975
Van91I	CCANNNNNTGG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XspI	CTAG	6 cut(s)	56, 120, 297, 360, 489, 714
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.