Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006620

Physical Location & Seq

Genomic Coordinates Reverse (-)

19598684 .. 19599571

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAATCAGGAGTTGTGGAACTTGGTTCGGTCAAATCAACTCCGGAAGAACAAAGTTATGTGGATATGGTTAGAAGTGCGTTTGGGGAATCTAGTCCTATTCAGCCAAAGGCATTTCCAATGATATTTGGACGTGAACTAAGTCTCGGGGGTCCAAAATCACAATCCGTTAACATTTCCTTTACCCCGAAAATAGAAGAAGATTTTGCATTTCCTCCAGAGTCGTTGGAATTACAATCAGTAGGTACTTCAAATGGATTTCCAAGTGAGGGTGGTGAAGTAAAACTGTTTCCTCAAATGAACCAGATGATGGTTGACGGATTCAATACCCAGACAAGGGTTTCAAGTTCGGAGCTGCTTAAGGATGAGTCATCGACACAAGTGGATGAGCAAAAACCCAGAAAGAGAGGGAGAAAGCCTTCCAATGGGAGAGAAGAACCATTGAATCACGTGGAAGCAGAGCGGCAGAGGCGCGAGAAGCTTAACCAGAGGTTCTATGCACTAAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTTCTTGGTGATGCCATTACCCATATCACCGATCTCCAGATGAAGATCAGAATCATTGAAACTGAAAAGCAGATGGTTAACAACAAGGGAAAGCAGTTGCCGGTTCCAGAGATTGATTTTCAGGAACGCCACGAGGATGCAGTTGTCAGGATGAATTTCCCATTGGATTCTCATCCGGTTTCTGATGTCATCCGAACACTAAGGGAACATAAAATTGTACCTCAAGAGTCTAATGTTTCCATAACAGACAACGATAAGGTTATTCATACATTCTCCATTCAAACTCAAGGTGGTGATGCTGAGAAGTTAAAGGAGAAGCTGGTGGCCTATCTTTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

296

Amino Acids

33.18

Weight (kDa)

6.14

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	149 - 195	1.2e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16430
fragaria_vesca	FvH4_2g22150 FvH4_2g22150
malus_domestica	MD05G1202500.v1.1 MD05G1202900.v1.1 MD10G1190000.v1.1
prunus_persica	Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1
pyrus_communis	pycom05g18900 pycom05g18950 pycom10g16360 pycom10g16370
rosa_chinensis	RchiOBHm_Chr6g0288981
rosa_laevigata	RLG00000012333 RLG00000013932
rosa_multiflora	Rmu_sc0000666.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179620
rosa_rugosa	Rorug06G0199900
rosa_samantha	Rh6AG311600 Rh6BG318100 Rh6CG325000 Rh6DG310800
rosa_wichuraiana	Rw6G013790 Rw6G026880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	463
AccII	CGCG	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	700
AcvI	CACGTG	1 cut(s)	451
AfaI	GTAC	2 cut(s)	247, 765
AfiI	CCNNNNNNNGG	5 cut(s)	269, 310, 336, 337, 425
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	7 cut(s)	252, 325, 345, 445, 605, 827, 882
AjiI	CACGTC	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AluBI	AGCT	4 cut(s)	355, 481, 509, 865
AluI	AGCT	4 cut(s)	355, 481, 509, 865
Alw26I	GTCTC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	1 cut(s)	870
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	4 cut(s)	287, 565, 566, 851
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	152
BauI	CACGAG	1 cut(s)	677
BbrPI	CACGTG	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	3 cut(s)	304, 526, 613
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	2 cut(s)	356, 464
BlsI	GCNGC	2 cut(s)	357, 465
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	153, 651
BmsI	GCATC	3 cut(s)	547, 673, 832
BpmI	CTGGAG	2 cut(s)	201, 566
BpuEI	CTTGAG	2 cut(s)	753, 816
BsaAI	YACGTR	1 cut(s)	451
BsaBI	GATNNNNATC	3 cut(s)	590, 596, 717
BsaWI	WCCGGW	2 cut(s)	43, 721
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 310, 336, 337, 425
Bse118I	RCCGGY	1 cut(s)	646
Bse8I	GATNNNNATC	3 cut(s)	590, 596, 717
BseAI	TCCGGA	1 cut(s)	43
BseGI	GGATG	6 cut(s)	370, 391, 688, 702, 718, 735
BseJI	GATNNNNATC	3 cut(s)	590, 596, 717
BseLI	CCNNNNNNNGG	5 cut(s)	269, 310, 336, 337, 425
BseMII	CTCAG	1 cut(s)	837
BseXI	GCAGC	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	872
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	44, 647, 722
BslI	CCNNNNNNNGG	5 cut(s)	269, 310, 336, 337, 425
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	872
BsoBI	CYCGRG	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	577, 591
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	872
BspCNI	CTCAG	1 cut(s)	838
BspEI	TCCGGA	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	153, 651
BspTI	CTTAAG	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	646
BssAI	RCCGGY	1 cut(s)	646
BssMI	GATC	2 cut(s)	577, 591
BssSI	CACGAG	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	677
Bst4CI	ACNGT	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	552
BstAFI	CTTAAG	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	140, 503, 746, 846
BstF5I	GGATG	6 cut(s)	370, 391, 688, 702, 718, 735
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	2 cut(s)	580, 594
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	577, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	469, 478, 506
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	872
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	6 cut(s)	370, 391, 688, 702, 718, 735
CfoI	GCGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	246, 764
CviJI	RGCY	8 cut(s)	106, 355, 418, 481, 509, 542, 865, 872
CviKI_1	RGCY	8 cut(s)	106, 355, 418, 481, 509, 542, 865, 872
CviQI	GTAC	2 cut(s)	246, 764
DdeI	CTNAG	4 cut(s)	140, 503, 746, 846
DpnI	GATC	2 cut(s)	579, 593
DpnII	GATC	2 cut(s)	577, 591
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	146
FaiI	YATR	8 cut(s)	60, 68, 498, 524, 570, 756, 788, 813
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
Fnu4HI	GCNGC	2 cut(s)	356, 464
FokI	GGATG	6 cut(s)	377, 398, 695, 705, 709, 722
Fsp4HI	GCNGC	2 cut(s)	356, 464
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	2 cut(s)	356, 464
GsuI	CTGGAG	2 cut(s)	201, 566
HaeIII	GGCC	1 cut(s)	872
HapII	CCGG	3 cut(s)	44, 647, 722
HhaI	GCGC	1 cut(s)	474
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	3 cut(s)	172, 316, 625
HindII	GTYRAC	3 cut(s)	172, 316, 625
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	8 cut(s)	89, 221, 321, 368, 445, 597, 713, 773
HpaI	GTTAAC	2 cut(s)	172, 625
HpaII	CCGG	3 cut(s)	44, 647, 722
HphI	GGTGA	4 cut(s)	287, 565, 566, 851
Hpy166II	GTNNAC	4 cut(s)	137, 172, 316, 625
Hpy188I	TCNGA	4 cut(s)	352, 596, 730, 740
Hpy188III	TCNNGA	8 cut(s)	9, 44, 218, 583, 653, 668, 694, 770
Hpy8I	GTNNAC	4 cut(s)	137, 172, 316, 625
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4IV	ACGT	2 cut(s)	133, 450
HpyCH4V	TGCA	3 cut(s)	209, 500, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	469, 478, 506
HpyF3I	CTNAG	4 cut(s)	140, 503, 746, 846
HpySE526I	ACGT	2 cut(s)	133, 450
HspAI	GCGC	1 cut(s)	472
Kpn2I	TCCGGA	1 cut(s)	43
KspAI	GTTAAC	2 cut(s)	172, 625
Kzo9I	GATC	2 cut(s)	577, 591
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	3 cut(s)	547, 673, 832
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	2 cut(s)	133, 450
MalI	GATC	2 cut(s)	579, 593
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	2 cut(s)	577, 591
MboII	GAAGA	7 cut(s)	59, 209, 212, 446, 539, 541, 601
MluCI	AATT	3 cut(s)	230, 700, 759
MlyI	GAGTC	3 cut(s)	230, 377, 782
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	225, 262, 303, 401, 462, 483, 553, 673, 777
MroI	TCCGGA	1 cut(s)	43
MroXI	GAANNNNTTC	1 cut(s)	418
MseI	TTAA	5 cut(s)	171, 360, 483, 624, 854
MslI	CAYNNNNRTG	1 cut(s)	681
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	3 cut(s)	44, 647, 722
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	469, 478, 506
NdeII	GATC	2 cut(s)	577, 591
NlaIV	GGNNCC	2 cut(s)	153, 651
PdmI	GAANNNNTTC	1 cut(s)	418
PfeI	GAWTC	5 cut(s)	89, 321, 445, 597, 713
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	357, 465
PleI	GAGTC	3 cut(s)	229, 376, 781
PmaCI	CACGTG	1 cut(s)	451
PmlI	CACGTG	1 cut(s)	451
PpsI	GAGTC	3 cut(s)	229, 376, 781
Ppu21I	YACGTR	1 cut(s)	451
PspCI	CACGTG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	153, 651
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	247, 765
RsaNI	GTAC	2 cut(s)	246, 764
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	171, 360, 483, 624, 854
SatI	GCNGC	2 cut(s)	356, 464
Sau3AI	GATC	2 cut(s)	577, 591
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	3 cut(s)	230, 377, 782
SfaNI	GCATC	3 cut(s)	547, 673, 832
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	3 cut(s)	359, 768, 831
SmoI	CTYRAG	3 cut(s)	359, 768, 831
Sse9I	AATT	3 cut(s)	230, 700, 759
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	288
TaiI	ACGT	2 cut(s)	136, 453
TaqI	TCGA	2 cut(s)	374, 527
TaqII	GACCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	230, 700, 759
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	5 cut(s)	89, 321, 445, 597, 713
Tru1I	TTAA	5 cut(s)	171, 360, 483, 624, 854
Tru9I	TTAA	5 cut(s)	171, 360, 483, 624, 854
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	5 cut(s)	17, 314, 602, 713, 800
TspGWI	ACGGA	2 cut(s)	157, 333
Van91I	CCANNNNNTGG	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	418
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.