Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006620

Physical Location & Seq

Genomic Coordinates Reverse (-)

21818289 .. 21819706

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTCAGAAGTGCATTTGGGGAATCTAGTCCTATTCAGGCAAAGACATTTCCAATGATATTTGGACGTGAACTAAGTCTCCGGGAAGAAGATTGTGCATTTCCTCCAGAACCGTTTGAATTACAATCAGTAGGCACTTCAAATGGATGTCGAAGAGAGGATAGTGAAGTAAAACTGTTTCCGCAAATGAACCAAATGATGGTTGACGGTTTCAATGTTCAGACAAGAGTCTCAAGTTCGGAGCTGCTCAAGGATGAGTCCTCGGCACAAATTGATGAGCGGAAACCCAGAAAGAGAGGGAGAAAGCCTGCCAATGGGAGAGAAGAACCATTGAATCACGTGGAAGCAGAAAGGCGGAGGCGCGAGAAGCCTAACCAGAGGTACTATGCACTAAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTTCTTGGTGATGCCATTACCTATATCTCGAGGATGCAGTTGGTATTGAGTTTGACTGATAAATATATACCCCTTTTTATAGGAATGCTGGGAACCTTTGGTCATGGCTTCTCTGCTATGACTAAATCAAAATCGAGCAATTTTCCCAAAAATTGGTCCATGGAAGGAGCCAGTGAAGGCCCACTAGGGGCAAATGCCCCAACTCAAGTTATTCGTTTGTTAAGTTGCAGACTACCATTATATAATACATACGCGTTATACTTGAAGAAAATATATATAACTACTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

242

Amino Acids

27.25

Weight (kDa)

9.51

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	112 - 158	2.2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16430
fragaria_vesca	FvH4_2g22150 FvH4_2g22150
malus_domestica	MD05G1202500.v1.1 MD05G1202900.v1.1 MD10G1190000.v1.1
prunus_persica	Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1
pyrus_communis	pycom05g18900 pycom05g18950 pycom10g16360 pycom10g16370
rosa_chinensis	RchiOBHm_Chr6g0288981
rosa_laevigata	RLG00000012333 RLG00000013932
rosa_multiflora	Rmu_sc0000666.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179620
rosa_rugosa	Rorug06G0199900
rosa_samantha	Rh6AG311600 Rh6BG318100 Rh6CG325000 Rh6DG310800
rosa_wichuraiana	Rw6G013790 Rw6G026880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	199, 588
AccBSI	CCGCTC	1 cut(s)	280
AccII	CGCG	2 cut(s)	363, 689
AciI	CCGC	3 cut(s)	182, 280, 355
AcvI	CACGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	4 cut(s)	199, 314, 588, 622
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	5 cut(s)	119, 141, 214, 334, 700
AjiI	CACGTC	1 cut(s)	68
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	2 cut(s)	244, 398
AluI	AGCT	2 cut(s)	244, 398
Alw26I	GTCTC	2 cut(s)	83, 235
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	591, 614
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	591
BbrPI	CACGTG	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	2 cut(s)	193, 415
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	83, 235
BfaI	CTAG	2 cut(s)	27, 620
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	591
BmeT110I	CYCGRG	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	591, 614
BmiI	GGNNCC	2 cut(s)	529, 604
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	436, 459
BoxI	GACNNNNGTC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	3 cut(s)	217, 233, 624
BpuMI	CCSGG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	261, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 314, 588, 622
Bse1I	ACTGG	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	261, 594
BseGI	GGATG	3 cut(s)	152, 259, 474
BseLI	CCNNNNNNNGG	4 cut(s)	199, 314, 588, 622
BseNI	ACTGG	1 cut(s)	606
BseXI	GCAGC	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	363, 689
BshFI	GGCC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	199, 314, 588, 622
BsmAI	GTCTC	2 cut(s)	83, 235
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	3 cut(s)	182, 280, 355
BspANI	GGCC	1 cut(s)	615
BspFNI	CGCG	2 cut(s)	363, 689
BspLI	GGNNCC	2 cut(s)	529, 604
BsrBI	CCGCTC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	606
BssECI	CCNNGG	2 cut(s)	261, 594
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	3 cut(s)	114, 177, 209
Bst6I	CTCTTC	2 cut(s)	148, 441
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	74, 392
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	152, 259, 474
BstFNI	CGCG	2 cut(s)	363, 689
BstHHI	GCGC	1 cut(s)	363
BstMAI	GTCTC	2 cut(s)	83, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 395
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	363, 689
BstV1I	GCAGC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	152, 259, 474
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	591, 614
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	539, 595
CviJI	RGCY	8 cut(s)	244, 307, 370, 398, 431, 543, 605, 615
CviKI_1	RGCY	8 cut(s)	244, 307, 370, 398, 431, 543, 605, 615
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	2 cut(s)	74, 392
Eam1104I	CTCTTC	2 cut(s)	148, 441
EarI	CTCTTC	2 cut(s)	148, 441
EciI	GGCGGA	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	591
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	542, 598
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	2 cut(s)	538, 594
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	3 cut(s)	159, 266, 481
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	27, 620
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	527
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	542, 598
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	4 cut(s)	23, 228, 257, 334
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	71, 205
Hpy188I	TCNGA	3 cut(s)	8, 222, 241
Hpy188III	TCNNGA	2 cut(s)	107, 463
Hpy8I	GTNNAC	2 cut(s)	71, 205
HpyAV	CCTTC	2 cut(s)	593, 605
HpyCH4III	ACNGT	3 cut(s)	114, 177, 209
HpyCH4IV	ACGT	2 cut(s)	67, 339
HpyCH4V	TGCA	5 cut(s)	14, 98, 389, 472, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 395
HpyF3I	CTNAG	2 cut(s)	74, 392
HpySE526I	ACGT	2 cut(s)	67, 339
Hsp92II	CATG	2 cut(s)	542, 598
HspAI	GCGC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	241, 602
LpnPI	CCDG	8 cut(s)	23, 95, 120, 301, 321, 389, 509, 619
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	2 cut(s)	436, 459
MaeI	CTAG	2 cut(s)	27, 620
MaeII	ACGT	2 cut(s)	67, 339
MbiI	CCGCTC	1 cut(s)	280
MboII	GAAGA	7 cut(s)	98, 101, 165, 335, 428, 430, 712
MluCI	AATT	4 cut(s)	119, 270, 574, 586
MluI	ACGCGT	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	237, 266
MnlI	CCTC	8 cut(s)	114, 151, 271, 290, 351, 372, 442, 459
MseI	TTAA	1 cut(s)	656
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	525
MvnI	CGCG	2 cut(s)	363, 689
MwoI	GCNNNNNNNGC	2 cut(s)	367, 395
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	594
NlaIII	CATG	2 cut(s)	542, 598
NlaIV	GGNNCC	2 cut(s)	529, 604
NmeAIII	GCCGAG	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	463
PctI	GAATGC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	23, 334
PflMI	CCANNNNNTGG	2 cut(s)	199, 588
PfoI	TCCNGGA	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	2 cut(s)	236, 265
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	2 cut(s)	236, 265
Ppu21I	YACGTR	1 cut(s)	340
PshAI	GACNNNNGTC	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	529, 604
PspPI	GGNCC	2 cut(s)	591, 614
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	2 cut(s)	591, 614
SchI	GAGTC	2 cut(s)	237, 266
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	7 cut(s)	70, 246, 342, 383, 400, 458, 533
SfaNI	GCATC	2 cut(s)	436, 459
Sfr274I	CTCGAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	591
SlaI	CTCGAG	1 cut(s)	463
SmlI	CTYRAG	4 cut(s)	232, 248, 463, 639
SmoI	CTYRAG	4 cut(s)	232, 248, 463, 639
Sse9I	AATT	4 cut(s)	119, 270, 574, 586
SsiI	CCGC	3 cut(s)	182, 280, 355
SspMI	CTAG	2 cut(s)	27, 620
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	114, 177, 209
TaiI	ACGT	2 cut(s)	70, 342
TaqI	TCGA	4 cut(s)	151, 416, 464, 569
TasI	AATT	4 cut(s)	119, 270, 574, 586
TfiI	GAWTC	2 cut(s)	23, 334
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	613
Van91I	CCANNNNNTGG	2 cut(s)	199, 588
VpaK11BI	GGWCC	1 cut(s)	591
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	2 cut(s)	27, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.