pycom10g16360
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
19578657 .. 19580180
1524 bp
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UTR
Exon/CDS
Intron
pycom10g16360.2

Sequence Viewer

Length: 1410 bp
ATGATTCTCATTAACTTTATCTGCAGGTCTGGTGGTCCTTCACTATCCTTAATACTGTGCCAGCTTGTCAACGGGTCGAATTGGAATTATGCCATTTTCTGGCAGGCTGTTAGCTCGAAATCTGGTGGATCTGCCTTGGGTTGGGGTGATGGGCATTGCAGGGATACCAAGGATGGTGGAGCTGGGGACGCGAATTCTAGTCGGGATAGTAGTTTGGAGGCAGTGCAGAATAAAGAAGAGGTGAAGAAGCGGGTGGTCGAGAAGCTCCACGCATGTTTTGGCGGTTTACATGCGGATAATTATGCAAGGAGGTTGGATGGGGTGTCAGATGTGGAGATGTTTTATCTCACTTCAATGTGTTATGCATTTCAACTTGATTCGATTTCACACTGTGGTCCTGCAGAGTCGTATAACTCCAGAAAATCAATTTGGGTTTCAGATGCGGGTAGTTGTTTACATCATTACCAGTCGAGATCATTTTTAGCAAGATTGGCTGGGTTTCGGACCCTGGTGTTTGTACCAATGAAATCAGGAGTTGTGGAACTTGGTTCGGTCAAATCAACTTCGGAAGAACAAAGTTATGTGGATATGGTCAGAAGTGCATTTGGGGAATCTAGTCCTATTCAGCCAAAGGCATCTCCAATGATATTTGGACGTGAACTAAGTCTCGGGGGTCCAAAGTCACAATCCGTTAACATTTCCTTTACCCCGAAAGTAGAAGAAGATTTTGCATGTCCTCCAGAGTCGTTTGAATTACAATCAGTAGGTACTTCAAATGGATTTCGAAGTGAGGGTGGTGAAGTAAAACTGTTTCCTCAAATGAACCAGCTGATGGTTGACGGATTCAATACCCAGACAGGGGTTTCAAGTTCGGAGCTGCTTAAGGATGAGTCATCGACACAAGTGGATGAACAAAAACCCAGAAAGAGAGGGAGAAAGCCTTCCAATGGGAGAGAAGAACCATTGAATCACGTGGAAGCAGAGCGGCAGAGGCGCGAGAAGCTTAACCAGAGGTTCTATGCACTAAGAGCTGTTGTTCCTAACATATCTAAGATGGATAAAGCCTCTCTTCTTGGTGATGCCATTACCTATATCACCGATCTCCAGATGAAGATCAGAGTCATTGAAACTGAAAAGCAGATGGTTAACAACAAGGGAAGGCAGTTGCCGGTTCCAGAGATTGATTTTCAGGAACGCCACGAGGATGCAGTTGTCAGGATGAACTGCCCACTGGATTCTCACCCGGTTTCTGATGTCATCCGAACACTAAGGGAACATAAAATTGTACCTCAAGAGTCTAATGTTTCCATAACAGACAAGGATAAAGTTATTCATACATTCTCCATTAAAACTCAAGGTGGTGATGATGAGAAGTCAAAGGAGAAGCTGGTGGCCTTTCCTTCAAAATGA

Protein Analysis

470

Amino Acids

52.06

Weight (kDa)

6.84

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccB7I CCANNNNNTGG 2 cut(s) 99, 832
AccBSI CCGCTC 1 cut(s) 985
AccII CGCG 2 cut(s) 191, 996
AciI CCGC 5 cut(s) 250, 282, 293, 443, 985
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 193
AcvI CACGTG 1 cut(s) 973
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 3 cut(s) 519, 769, 1287
AfiI CCNNNNNNNGG 6 cut(s) 99, 141, 832, 858, 859, 947
AflII CTTAAG 1 cut(s) 881
AgsI TTSAA 9 cut(s) 354, 371, 752, 774, 847, 867, 967, 1127, 1404
AjiI CACGTC 1 cut(s) 656
AjnI CCWGG 1 cut(s) 507
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 9 cut(s) 64, 114, 182, 265, 829, 877, 1003, 1031, 1387
AluI AGCT 9 cut(s) 64, 114, 182, 265, 829, 877, 1003, 1031, 1387
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 1 cut(s) 1392
ApeKI GCWGC 1 cut(s) 877
ApoI RAATTY 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 940
AspLEI GCGC 1 cut(s) 996
AspS9I GGNCC 4 cut(s) 35, 395, 504, 674
AsuC2I CCSGG 1 cut(s) 1244
AsuHPI GGTGA 7 cut(s) 158, 253, 809, 1087, 1088, 1232, 1373
AsuII TTCGAA 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 4 cut(s) 35, 395, 504, 674
BauI CACGAG 1 cut(s) 1199
BbrPI CACGTG 1 cut(s) 973
BbvI GCAGC 1 cut(s) 864
BccI CCATC 6 cut(s) 143, 167, 311, 826, 1048, 1135
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 1244
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 2 cut(s) 198, 615
BfmI CTRYAG 2 cut(s) 22, 399
BfrI CTTAAG 1 cut(s) 881
BfuAI ACCTGC 1 cut(s) 15
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 2 cut(s) 878, 986
BlsI GCNGC 2 cut(s) 879, 987
Bme1390I CCNGG 2 cut(s) 509, 1244
Bme18I GGWCC 4 cut(s) 35, 395, 504, 674
BmeT110I CYCGRG 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 656
BmgT120I GGNCC 4 cut(s) 35, 395, 504, 674
BmiI GGNNCC 3 cut(s) 506, 675, 1173
BmrFI CCNGG 2 cut(s) 509, 1244
BmsI GCATC 4 cut(s) 430, 644, 1069, 1195
BpmI CTGGAG 3 cut(s) 400, 723, 1088
Bpu14I TTCGAA 1 cut(s) 784
BpuEI CTTGAG 2 cut(s) 1275, 1338
BpuMI CCSGG 1 cut(s) 1244
BsaAI YACGTR 1 cut(s) 973
BsaBI GATNNNNATC 1 cut(s) 1112
BsaJI CCNNGG 3 cut(s) 135, 168, 507
Bsc4I CCNNNNNNNGG 6 cut(s) 99, 141, 832, 858, 859, 947
Bse118I RCCGGY 1 cut(s) 1168
Bse1I ACTGG 2 cut(s) 466, 1236
Bse3DI GCAATG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 1112
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 135, 168, 507
BseGI GGATG 7 cut(s) 178, 322, 892, 913, 1210, 1224, 1257
BseJI GATNNNNATC 1 cut(s) 1112
BseLI CCNNNNNNNGG 6 cut(s) 99, 141, 832, 858, 859, 947
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 2 cut(s) 466, 1236
BseXI GCAGC 1 cut(s) 864
BseYI CCCAGC 2 cut(s) 182, 494
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 191, 996
BshFI GGCC 1 cut(s) 1394
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 2 cut(s) 1169, 1244
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 6 cut(s) 99, 141, 832, 858, 859, 947
BsmAI GTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 1394
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 784
Bsp143I GATC 4 cut(s) 128, 473, 1099, 1113
BspACI CCGC 5 cut(s) 250, 282, 293, 443, 985
BspANI GGCC 1 cut(s) 1394
BspFNI CGCG 2 cut(s) 191, 996
BspLI GGNNCC 3 cut(s) 506, 675, 1173
BspMAI CTGCAG 2 cut(s) 26, 403
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 784
BspTI CTTAAG 1 cut(s) 881
BsrBI CCGCTC 1 cut(s) 985
BsrDI GCAATG 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 1168
BsrI ACTGG 2 cut(s) 466, 1236
BssAI RCCGGY 1 cut(s) 1168
BssECI CCNNGG 3 cut(s) 135, 168, 507
BssMI GATC 4 cut(s) 128, 473, 1099, 1113
BssSI CACGAG 1 cut(s) 1199
BssT1I CCWWGG 2 cut(s) 135, 168
Bst2BI CACGAG 1 cut(s) 1199
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 57, 392, 810
Bst6I CTCTTC 2 cut(s) 231, 1074
BstAFI CTTAAG 1 cut(s) 881
BstBAI YACGTR 1 cut(s) 973
BstBI TTCGAA 1 cut(s) 784
BstC8I GCNNGC 2 cut(s) 62, 105
BstDEI CTNAG 4 cut(s) 662, 1025, 1050, 1268
BstF5I GGATG 7 cut(s) 178, 322, 892, 913, 1210, 1224, 1257
BstFNI CGCG 2 cut(s) 191, 996
BstHHI GCGC 1 cut(s) 996
BstKTI GATC 4 cut(s) 131, 476, 1102, 1116
BstMAI GTCTC 1 cut(s) 671
BstMBI GATC 4 cut(s) 128, 473, 1099, 1113
BstMWI GCNNNNNNNGC 5 cut(s) 188, 491, 991, 1000, 1028
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 3 cut(s) 276, 293, 735
BstSCI CCNGG 2 cut(s) 507, 1242
BstSFI CTRYAG 2 cut(s) 22, 399
BstUI CGCG 2 cut(s) 191, 996
BstV1I GCAGC 1 cut(s) 864
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 1394
BtrI CACGTC 1 cut(s) 656
BtsCI GGATG 7 cut(s) 178, 322, 892, 913, 1210, 1224, 1257
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 228, 388, 1229
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 62, 105
CfoI GCGC 1 cut(s) 996
Cfr10I RCCGGY 1 cut(s) 1168
Cfr13I GGNCC 4 cut(s) 35, 395, 504, 674
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 518, 768, 1286
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 3 cut(s) 273, 290, 732
CviQI GTAC 3 cut(s) 518, 768, 1286
DdeI CTNAG 4 cut(s) 662, 1025, 1050, 1268
DpnI GATC 4 cut(s) 130, 475, 1101, 1115
DpnII GATC 4 cut(s) 128, 473, 1099, 1113
DraIII CACNNNGTG 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 231, 1074
EarI CTCTTC 2 cut(s) 231, 1074
Eco130I CCWWGG 2 cut(s) 135, 168
Eco47I GGWCC 4 cut(s) 35, 395, 504, 674
Eco72I CACGTG 1 cut(s) 973
Eco88I CYCGRG 1 cut(s) 668
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 2 cut(s) 135, 168
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 135, 168
FaeI CATG 3 cut(s) 276, 293, 735
FalI AAGNNNNNCTT 2 cut(s) 1053, 1085
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 272, 289, 731
FauI CCCGC 2 cut(s) 243, 436
Fnu4HI GCNGC 2 cut(s) 878, 986
FokI GGATG 7 cut(s) 185, 329, 899, 920, 1217, 1231, 1244
Fsp4HI GCNGC 2 cut(s) 878, 986
FspBI CTAG 2 cut(s) 198, 615
GlaI GCGC 1 cut(s) 995
GluI GCNGC 2 cut(s) 878, 986
GsaI CCCAGC 2 cut(s) 186, 498
GsuI CTGGAG 3 cut(s) 400, 723, 1088
HaeIII GGCC 1 cut(s) 1394
HapII CCGG 2 cut(s) 1169, 1244
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 996
Hin1II CATG 3 cut(s) 276, 293, 735
Hin6I GCGC 1 cut(s) 994
HinP1I GCGC 1 cut(s) 994
HincII GTYRAC 4 cut(s) 70, 694, 838, 1147
HindII GTYRAC 4 cut(s) 70, 694, 838, 1147
HindIII AAGCTT 1 cut(s) 1001
HpaI GTTAAC 2 cut(s) 694, 1147
HpaII CCGG 2 cut(s) 1169, 1244
HphI GGTGA 7 cut(s) 158, 253, 809, 1087, 1088, 1232, 1373
Hpy166II GTNNAC 7 cut(s) 70, 287, 455, 659, 694, 838, 1147
Hpy188I TCNGA 9 cut(s) 328, 439, 504, 568, 596, 874, 1118, 1252, 1262
Hpy8I GTNNAC 7 cut(s) 70, 287, 455, 659, 694, 838, 1147
HpyAV CCTTC 4 cut(s) 48, 951, 1152, 1410
HpyCH4III ACNGT 3 cut(s) 57, 392, 810
HpyCH4IV ACGT 2 cut(s) 655, 972
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 491, 991, 1000, 1028
HpyF3I CTNAG 4 cut(s) 662, 1025, 1050, 1268
HpySE526I ACGT 2 cut(s) 655, 972
Hsp92II CATG 3 cut(s) 276, 293, 735
HspAI GCGC 1 cut(s) 994
KspAI GTTAAC 2 cut(s) 694, 1147
Kzo9I GATC 4 cut(s) 128, 473, 1099, 1113
LmnI GCTCC 3 cut(s) 179, 270, 874
Lsp1109I GCAGC 1 cut(s) 864
LweI GCATC 4 cut(s) 430, 644, 1069, 1195
MaeI CTAG 2 cut(s) 198, 615
MaeII ACGT 2 cut(s) 655, 972
MaeIII GTNAC 1 cut(s) 681
MalI GATC 4 cut(s) 130, 475, 1101, 1115
MbiI CCGCTC 1 cut(s) 985
MboI GATC 4 cut(s) 128, 473, 1099, 1113
MboII GAAGA 8 cut(s) 248, 256, 581, 731, 734, 968, 1061, 1123
MflI RGATCY 1 cut(s) 128
MluCI AATT 7 cut(s) 79, 85, 193, 298, 426, 752, 1281
MlyI GAGTC 5 cut(s) 413, 752, 899, 1128, 1304
MmeI TCCRAC 1 cut(s) 294
Mph1103I ATGCAT 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 940
MseI TTAA 7 cut(s) 12, 50, 693, 882, 1005, 1146, 1347
MslI CAYNNNNRTG 2 cut(s) 353, 1203
MspA1I CMGCKG 1 cut(s) 829
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 2 cut(s) 1169, 1244
MspR9I CCNGG 2 cut(s) 509, 1244
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 2 cut(s) 191, 996
MwoI GCNNNNNNNGC 5 cut(s) 188, 491, 991, 1000, 1028
NciI CCSGG 1 cut(s) 1244
NdeII GATC 4 cut(s) 128, 473, 1099, 1113
NlaIII CATG 3 cut(s) 276, 293, 735
NlaIV GGNNCC 3 cut(s) 506, 675, 1173
NmuCI GTSAC 1 cut(s) 681
NsiI ATGCAT 1 cut(s) 367
NspI RCATGY 3 cut(s) 276, 293, 735
NspV TTCGAA 1 cut(s) 784
PdmI GAANNNNTTC 1 cut(s) 940
PfeI GAWTC 6 cut(s) 4, 377, 611, 843, 967, 1235
PflMI CCANNNNNTGG 2 cut(s) 99, 832
PkrI GCNGC 2 cut(s) 879, 987
PleI GAGTC 5 cut(s) 412, 751, 898, 1127, 1303
PmaCI CACGTG 1 cut(s) 973
PmlI CACGTG 1 cut(s) 973
PpsI GAGTC 5 cut(s) 412, 751, 898, 1127, 1303
Ppu21I YACGTR 1 cut(s) 973
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 973
PspFI CCCAGC 2 cut(s) 182, 494
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 506, 675, 1173
PspPI GGNCC 4 cut(s) 35, 395, 504, 674
PstI CTGCAG 2 cut(s) 26, 403
PsuI RGATCY 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 829
RsaI GTAC 3 cut(s) 519, 769, 1287
RsaNI GTAC 3 cut(s) 518, 768, 1286
RseI CAYNNNNRTG 2 cut(s) 353, 1203
SaqAI TTAA 7 cut(s) 12, 50, 693, 882, 1005, 1146, 1347
SatI GCNGC 2 cut(s) 878, 986
Sau3AI GATC 4 cut(s) 128, 473, 1099, 1113
Sau96I GGNCC 4 cut(s) 35, 395, 504, 674
SchI GAGTC 5 cut(s) 413, 752, 899, 1128, 1304
ScrFI CCNGG 2 cut(s) 509, 1244
SfaNI GCATC 4 cut(s) 430, 644, 1069, 1195
SfcI CTRYAG 2 cut(s) 22, 399
SfuI TTCGAA 1 cut(s) 784
SinI GGWCC 4 cut(s) 35, 395, 504, 674
SmiMI CAYNNNNRTG 2 cut(s) 353, 1203
SmlI CTYRAG 3 cut(s) 881, 1290, 1353
SmoI CTYRAG 3 cut(s) 881, 1290, 1353
Sse9I AATT 7 cut(s) 79, 85, 193, 298, 426, 752, 1281
SsiI CCGC 5 cut(s) 250, 282, 293, 443, 985
SspMI CTAG 2 cut(s) 198, 615
StyD4I CCNGG 2 cut(s) 507, 1242
StyI CCWWGG 2 cut(s) 135, 168
TaaI ACNGT 3 cut(s) 57, 392, 810
TaiI ACGT 2 cut(s) 658, 975
TaqI TCGA 7 cut(s) 77, 116, 258, 380, 470, 784, 896
TaqII GACCGA 1 cut(s) 541
TasI AATT 7 cut(s) 79, 85, 193, 298, 426, 752, 1281
TauI GCSGC 1 cut(s) 988
TfiI GAWTC 6 cut(s) 4, 377, 611, 843, 967, 1235
Tru1I TTAA 7 cut(s) 12, 50, 693, 882, 1005, 1146, 1347
Tru9I TTAA 7 cut(s) 12, 50, 693, 882, 1005, 1146, 1347
TscAI CASTG 3 cut(s) 228, 395, 1236
TseFI GTSAC 1 cut(s) 681
TseI GCWGC 1 cut(s) 877
Tsp45I GTSAC 1 cut(s) 681
TspDTI ATGAA 6 cut(s) 539, 836, 924, 1124, 1235, 1322
TspGWI ACGGA 2 cut(s) 679, 855
TspRI CASTG 3 cut(s) 228, 395, 1236
Van91I CCANNNNNTGG 2 cut(s) 99, 832
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 4 cut(s) 35, 395, 504, 674
XapI RAATTY 1 cut(s) 193
XceI RCATGY 3 cut(s) 276, 293, 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 940
XspI CTAG 2 cut(s) 198, 615
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.