Rh6DG310800
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
51177782 .. 51180903
3122 bp
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UTR
Exon/CDS
Intron
Rh6DG310800.1

Sequence Viewer

Length: 1515 bp
ATGGGTGAGAAGCTTTGGGTGAATGAAGAAGAAAAGGTCATATTGGAGTCAGTACTAGGCACCGAAGCGTGCCAGGTGTTGATCTCATTGGCTTCGGAGAACTTGTTGTCCGACTTGGCTAGGCCTCCGGGACAATTGGGAGTGCAGCAGGGGCTGTCCCAGCTTGTCCAAGGGTCCAGTTGGGATTATGCCGTCTTCTGGCAGGTTGTGGGATTGAAATCTGGTGCAGCTGCCTTGATTTGGGGCGATGGACATTGCAGAGACAGCAAGGGTGGTGGAGTTGGAGACGAGAGTTCTAGTAGAGATAGCAACTTGGAGGGAGTGCAGAAGAAGAATGTGGAGGTGAGGAAGTGGGTGCTTGGGAAGCTCCACTCATGTTTCGGTGGTTCGGGTGAGGATAACTATGTGAGGAGGTTGGATCGGTTGTCAGATGTGGAAATGTTTTACCTTACTTCAATGTACTTTAAATTTCAACTTGATTCACCGTATGGTCCTGGGGAGTCGTACAAGTCTTGTAAATCAATTTGGGTTTCAAATGTTGCTAGTTGCTTACATCATTACCAGTCAAGAACATTTTTAGCTAGATTGGCAGGGTTCCAAACAGTGGTGTTTGTACCTATGAAATCAGGAGTTGTGGAGCTTGGTTCAATCAAATCAATTCCGGAAGAACAGAATATTGTGGATGTGGTCAGAAGTGTATTTGGGGAATCTAGCTCTGTTCAAGCAAAGGTATATCCAAAGATTTTTGGACATGAGCTTAGTCTCGGTGGTCCAAAATCACAACCGATTAATATTGCCTTTTGCCCAAAGGTAGAGACTGACTCTTCGTTTCCTTCAGAATCTTTTGACTTACAAGCAATAGGCACTTCAAACGGATGTCGAACTGAGGATAATGAAGTTAAACTGTTTCCGCACTTGAGCCAAATTATGTCTGGGAATTTCAGTTCTACAGCTGGTGTTTCAAGTTCAGAGCTGCCTAAAGACGAGTCATCGGCACAAATTGATGAAAGGAAACCTAGAAAGAGAGGGAGAAAGCCTGCCAATGGAAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGGCGTGAGAAGCTTAACCAGCGGTTTTATGCACTTAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTCCTTGGTGATGCCATTACCTACATCAACGATCTCCAGATGAAGATCAGGGTCATGGAAACTGAGAAGCAGATGGGAAACAGCAGCCAAATGCAGTTCCCGGTTCCAGAGATTGATTTCCAGGAACGGCATGAGGATGCTGTTGTGAGGATGAACTGCCCACTGGATTCTCACCCGGTTTCTGACGTCATCAGAACACTCAAGGAACATAACATTGTAGCTCAAGATACTAATGTTTCCGTAACAGACGATGACACAGTTATTCATACATTCTCCATTCATACTCAAGGTGGTGATGCCGAGCAGTTAAAGGAGAAGCTGGTGGCATCTCTTTCAAAATCATCCATGTAA

Protein Analysis

504

Amino Acids

55.79

Weight (kDa)

5.74

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 49 - 234 9.4e-46 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 355 - 401 2.5e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1353
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 604
AccBSI CCGCTC 1 cut(s) 1081
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 3 cut(s) 911, 1081, 1108
AclWI GGATC 1 cut(s) 426
AcsI RAATTY 2 cut(s) 467, 937
AcuI CTGAAG 1 cut(s) 819
AcyI GRCGYC 1 cut(s) 1350
AfaI GTAC 4 cut(s) 54, 461, 506, 615
AfiI CCNNNNNNNGG 4 cut(s) 198, 240, 604, 1043
AjnI CCWGG 3 cut(s) 72, 493, 1284
AloI GAACNNNNNNTCC 4 cut(s) 92, 124, 928, 960
Alw26I GTCTC 4 cut(s) 255, 279, 767, 809
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 5 cut(s) 145, 227, 230, 973, 1248
ApoI RAATTY 2 cut(s) 467, 937
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
AseI ATTAAT 1 cut(s) 789
AspS9I GGNCC 3 cut(s) 174, 491, 770
AsuC2I CCSGG 3 cut(s) 129, 1265, 1340
AsuHPI GGTGA 8 cut(s) 17, 31, 355, 404, 474, 1184, 1328, 1469
AvaII GGWCC 3 cut(s) 174, 491, 770
BaeI ACNNNNGTAYC 2 cut(s) 1383, 1416
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 5 cut(s) 157, 217, 239, 960, 1260
BccI CCATC 3 cut(s) 242, 1144, 1231
BceAI ACGGC 2 cut(s) 176, 1307
BciT130I CCWGG 3 cut(s) 74, 495, 1286
BcnI CCSGG 3 cut(s) 129, 1265, 1340
BcoDI GTCTC 4 cut(s) 255, 279, 767, 809
BfaI CTAG 7 cut(s) 56, 120, 297, 543, 582, 711, 1017
BfmI CTRYAG 1 cut(s) 948
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 6 cut(s) 146, 228, 231, 974, 1082, 1249
BlsI GCNGC 6 cut(s) 147, 229, 232, 975, 1083, 1250
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 6 cut(s) 74, 129, 495, 1265, 1286, 1340
Bme18I GGWCC 3 cut(s) 174, 491, 770
BmgT120I GGNCC 3 cut(s) 174, 491, 770
BmiI GGNNCC 4 cut(s) 61, 175, 596, 1269
BmrFI CCNGG 6 cut(s) 74, 129, 495, 1265, 1286, 1340
BmsI GCATC 4 cut(s) 1165, 1291, 1450, 1499
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BpmI CTGGAG 1 cut(s) 1184
BpuEI CTTGAG 4 cut(s) 937, 1349, 1371, 1434
BpuMI CCSGG 3 cut(s) 129, 1265, 1340
BsaBI GATNNNNATC 2 cut(s) 217, 1208
BsaHI GRCGYC 1 cut(s) 1350
BsaJI CCNNGG 3 cut(s) 169, 494, 1168
BsaWI WCCGGW 1 cut(s) 661
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 240, 604, 1043
Bse1I ACTGG 3 cut(s) 177, 562, 1332
Bse3DI GCAATG 1 cut(s) 253
Bse8I GATNNNNATC 2 cut(s) 217, 1208
BseAI TCCGGA 1 cut(s) 661
BseBI CCWGG 3 cut(s) 74, 495, 1286
BseDI CCNNGG 3 cut(s) 169, 494, 1168
BseGI GGATG 5 cut(s) 688, 881, 1306, 1320, 1505
BseJI GATNNNNATC 2 cut(s) 217, 1208
BseLI CCNNNNNNNGG 4 cut(s) 198, 240, 604, 1043
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 876, 1218
BseNI ACTGG 3 cut(s) 177, 562, 1332
BseRI GAGGAG 1 cut(s) 424
BseXI GCAGC 5 cut(s) 157, 217, 239, 960, 1260
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 3 cut(s) 164, 246, 344
BshFI GGCC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 4 cut(s) 128, 662, 1265, 1340
BslFI GGGAC 2 cut(s) 142, 144
BslI CCNNNNNNNGG 4 cut(s) 198, 240, 604, 1043
BsmAI GTCTC 4 cut(s) 255, 279, 767, 809
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 142, 144
BsnI GGCC 1 cut(s) 124
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 4 cut(s) 81, 418, 1195, 1209
BspACI CCGC 3 cut(s) 911, 1081, 1108
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 2 cut(s) 877, 1219
BspEI TCCGGA 1 cut(s) 661
BspLI GGNNCC 4 cut(s) 61, 175, 596, 1269
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 1081
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 3 cut(s) 177, 562, 1332
BssECI CCNNGG 3 cut(s) 169, 494, 1168
BssMI GATC 4 cut(s) 81, 418, 1195, 1209
BssNI GRCGYC 1 cut(s) 1350
BssT1I CCWWGG 2 cut(s) 169, 1168
Bst2UI CCWGG 3 cut(s) 74, 495, 1286
Bst4CI ACNGT 4 cut(s) 486, 604, 906, 1423
Bst6I CTCTTC 2 cut(s) 829, 1042
BstACI GRCGYC 1 cut(s) 1350
BstC8I GCNNGC 2 cut(s) 70, 1038
BstDEI CTNAG 4 cut(s) 758, 885, 1121, 1227
BstF5I GGATG 5 cut(s) 688, 881, 1306, 1320, 1505
BstKTI GATC 4 cut(s) 84, 421, 1198, 1212
BstMAI GTCTC 4 cut(s) 255, 279, 767, 809
BstMBI GATC 4 cut(s) 81, 418, 1195, 1209
BstMWI GCNNNNNNNGC 9 cut(s) 151, 160, 264, 364, 587, 1087, 1096, 1105, 1124
BstNI CCWGG 3 cut(s) 74, 495, 1286
BstSCI CCNGG 6 cut(s) 72, 127, 493, 1263, 1284, 1338
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 5 cut(s) 157, 217, 239, 960, 1260
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 5 cut(s) 688, 881, 1306, 1320, 1505
BtsIMutI CAGTG 2 cut(s) 609, 1325
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 70, 1038
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 174, 491, 770
Csp6I GTAC 4 cut(s) 53, 460, 505, 614
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 6 cut(s) 375, 752, 1067, 1219, 1295, 1510
CviQI GTAC 4 cut(s) 53, 460, 505, 614
DdeI CTNAG 4 cut(s) 758, 885, 1121, 1227
DpnI GATC 4 cut(s) 83, 420, 1197, 1211
DpnII GATC 4 cut(s) 81, 418, 1195, 1209
DraI TTTAAA 1 cut(s) 466
Eam1104I CTCTTC 2 cut(s) 829, 1042
EarI CTCTTC 2 cut(s) 829, 1042
Eco130I CCWWGG 2 cut(s) 169, 1168
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 174, 491, 770
Eco57I CTGAAG 1 cut(s) 819
EcoRII CCWGG 3 cut(s) 72, 493, 1284
EcoT14I CCWWGG 2 cut(s) 169, 1168
ErhI CCWWGG 2 cut(s) 169, 1168
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 6 cut(s) 378, 755, 1070, 1222, 1298, 1513
FaqI GGGAC 2 cut(s) 142, 144
FatI CATG 6 cut(s) 374, 751, 1066, 1218, 1294, 1509
Fnu4HI GCNGC 6 cut(s) 146, 228, 231, 974, 1082, 1249
FokI GGATG 5 cut(s) 695, 888, 1313, 1327, 1492
Fsp4HI GCNGC 6 cut(s) 146, 228, 231, 974, 1082, 1249
FspBI CTAG 7 cut(s) 56, 120, 297, 543, 582, 711, 1017
GluI GCNGC 6 cut(s) 146, 228, 231, 974, 1082, 1249
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 1184
HaeIII GGCC 1 cut(s) 124
HapII CCGG 4 cut(s) 128, 662, 1265, 1340
Hin1I GRCGYC 1 cut(s) 1350
Hin1II CATG 6 cut(s) 378, 755, 1070, 1222, 1298, 1513
HindIII AAGCTT 2 cut(s) 11, 1097
HinfI GANTC 9 cut(s) 47, 479, 500, 707, 821, 839, 986, 1063, 1331
HpaII CCGG 4 cut(s) 128, 662, 1265, 1340
HphI GGTGA 8 cut(s) 17, 31, 355, 404, 474, 1184, 1328, 1469
Hpy188I TCNGA 8 cut(s) 97, 112, 430, 692, 838, 970, 1348, 1358
Hpy188III TCNNGA 6 cut(s) 567, 627, 662, 1201, 1271, 1388
HpyAV CCTTC 1 cut(s) 843
HpyCH4III ACNGT 4 cut(s) 486, 604, 906, 1423
HpyCH4IV ACGT 1 cut(s) 1350
HpyCH4V TGCA 6 cut(s) 145, 227, 258, 325, 1118, 1258
HpyF10VI GCNNNNNNNGC 9 cut(s) 151, 160, 264, 364, 587, 1087, 1096, 1105, 1124
HpyF3I CTNAG 4 cut(s) 758, 885, 1121, 1227
HpySE526I ACGT 1 cut(s) 1350
Hsp92I GRCGYC 1 cut(s) 1350
Hsp92II CATG 6 cut(s) 378, 755, 1070, 1222, 1298, 1513
Kpn2I TCCGGA 1 cut(s) 661
Kzo9I GATC 4 cut(s) 81, 418, 1195, 1209
LmnI GCTCC 2 cut(s) 372, 637
Lsp1109I GCAGC 5 cut(s) 157, 217, 239, 960, 1260
LweI GCATC 4 cut(s) 1165, 1291, 1450, 1499
MaeI CTAG 7 cut(s) 56, 120, 297, 543, 582, 711, 1017
MaeII ACGT 1 cut(s) 1350
MaeIII GTNAC 1 cut(s) 1405
MalI GATC 4 cut(s) 83, 420, 1197, 1211
MbiI CCGCTC 1 cut(s) 1081
MboI GATC 4 cut(s) 81, 418, 1195, 1209
MfeI CAATTG 1 cut(s) 134
MluCI AATT 7 cut(s) 134, 467, 522, 657, 924, 937, 999
MlyI GAGTC 4 cut(s) 56, 509, 815, 995
MmeI TCCRAC 3 cut(s) 135, 262, 396
MroI TCCGGA 1 cut(s) 661
MseI TTAA 5 cut(s) 465, 789, 900, 1101, 1472
MslI CAYNNNNRTG 1 cut(s) 1299
MspA1I CMGCKG 3 cut(s) 230, 953, 1108
MspI CCGG 4 cut(s) 128, 662, 1265, 1340
MspR9I CCNGG 6 cut(s) 74, 129, 495, 1265, 1286, 1340
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 3 cut(s) 74, 495, 1286
MwoI GCNNNNNNNGC 9 cut(s) 151, 160, 264, 364, 587, 1087, 1096, 1105, 1124
NciI CCSGG 3 cut(s) 129, 1265, 1340
NdeII GATC 4 cut(s) 81, 418, 1195, 1209
NlaIII CATG 6 cut(s) 378, 755, 1070, 1222, 1298, 1513
NlaIV GGNNCC 4 cut(s) 61, 175, 596, 1269
NmeAIII GCCGAG 1 cut(s) 1489
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 5 cut(s) 479, 707, 839, 1063, 1331
PflMI CCANNNNNTGG 1 cut(s) 604
PfoI TCCNGGA 2 cut(s) 127, 1284
PkrI GCNGC 6 cut(s) 147, 229, 232, 975, 1083, 1250
PleI GAGTC 4 cut(s) 55, 508, 815, 994
PpsI GAGTC 4 cut(s) 55, 508, 815, 994
PshBI ATTAAT 1 cut(s) 789
Psp6I CCWGG 3 cut(s) 72, 493, 1284
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 3 cut(s) 72, 493, 1284
PspN4I GGNNCC 4 cut(s) 61, 175, 596, 1269
PspPI GGNCC 3 cut(s) 174, 491, 770
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 2 cut(s) 230, 953
RsaI GTAC 4 cut(s) 54, 461, 506, 615
RsaNI GTAC 4 cut(s) 53, 460, 505, 614
RseI CAYNNNNRTG 1 cut(s) 1299
SaqAI TTAA 5 cut(s) 465, 789, 900, 1101, 1472
SatI GCNGC 6 cut(s) 146, 228, 231, 974, 1082, 1249
Sau3AI GATC 4 cut(s) 81, 418, 1195, 1209
Sau96I GGNCC 3 cut(s) 174, 491, 770
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 4 cut(s) 56, 509, 815, 995
ScrFI CCNGG 6 cut(s) 74, 129, 495, 1265, 1286, 1340
SfaNI GCATC 4 cut(s) 1165, 1291, 1450, 1499
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 3 cut(s) 174, 491, 770
SmiMI CAYNNNNRTG 1 cut(s) 1299
SmlI CTYRAG 4 cut(s) 916, 1364, 1386, 1449
SmoI CTYRAG 4 cut(s) 916, 1364, 1386, 1449
Sse9I AATT 7 cut(s) 134, 467, 522, 657, 924, 937, 999
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 911, 1081, 1108
SspI AATATT 2 cut(s) 676, 793
SspMI CTAG 7 cut(s) 56, 120, 297, 543, 582, 711, 1017
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 6 cut(s) 72, 127, 493, 1263, 1284, 1338
StyI CCWWGG 2 cut(s) 169, 1168
TaaI ACNGT 4 cut(s) 486, 604, 906, 1423
TaiI ACGT 1 cut(s) 1353
TaqI TCGA 2 cut(s) 880, 1145
TasI AATT 7 cut(s) 134, 467, 522, 657, 924, 937, 999
TatI WGTACW 2 cut(s) 52, 459
TauI GCSGC 1 cut(s) 1084
TfiI GAWTC 5 cut(s) 479, 707, 839, 1063, 1331
Tru1I TTAA 5 cut(s) 465, 789, 900, 1101, 1472
Tru9I TTAA 5 cut(s) 465, 789, 900, 1101, 1472
TscAI CASTG 2 cut(s) 609, 1332
TseI GCWGC 5 cut(s) 145, 227, 230, 973, 1248
TspDTI ATGAA 8 cut(s) 39, 635, 909, 1020, 1220, 1331, 1418, 1433
TspGWI ACGGA 2 cut(s) 888, 1393
TspRI CASTG 2 cut(s) 609, 1332
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 3 cut(s) 174, 491, 770
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 2 cut(s) 467, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XspI CTAG 7 cut(s) 56, 120, 297, 543, 582, 711, 1017
ZraI GACGTC 1 cut(s) 1351
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.