MD10G1190000.v1.1
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
28712519 .. 28714641
2123 bp
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UTR
Exon/CDS
Intron
MD10G1190000.v1.1.491

Sequence Viewer

Length: 1509 bp
ATGGGTGAGAAATTTTGGGTGAATGAAGAAGACAAGGTCATGGTTGAGTCAGTACTAGGCACCGAAGCGTGCCGGTTCTTGATCTCACTGGCTTCCGAAAATGTTTTGTCAGATTTGATTAGGCCGCCGGGTAAATTGGGTGTGCAGCAGGGGCTGTGCCAGCTTGTCAACGGGTCGAATTGGAATTATGCCATTTTCTGGCAGGCTGTTGGCTCGAAATCTGGTGGATCTGCCTTGAGTTGGGGTGATGGGCATTGCAGGGATCCCAAGGATGGTGGAGCTGGGGACGCGAATTCTAGTCGGGATAGTAGTTTGGAGGCAGTGCAGAATAAAGAAGAGGTGAAGAAGCTGGTGGTTGAGAAGCTCCATGCATGTTTTGGTGGTTTGAATGCGGATAATTATGCAAGGAGGTTGGATGGGGTGTCAGATGTGGAGATGTTTTATCTCACTTCAATGTGTTATGCATTTCAACTTGATTCGATTTCACACTGTGGTCCTGCAGAGTCGTATAACTCCAGAAAATCAATTTGGGTTTCAGATGCAGGTAGTTGTTTACATCATTACCAGTCGAGATCATTTTTAGCAAGATTGGCTGGGTTTCAGACTGTGGTGTTTGTACCAATGAAATCAGGAGTTGTGGAACTTGGTTCAGTCAAATCAACTCTGGAAGAACAAAGTTATGTGGATATGGTTAGAAGTGCATTTTGGGAATCTAGTCCTATTCAGCCAAAGGCATTTCCAATGATATTTGGACGTGAACTAAGTCTCGGGGGTCCAAAATCACAATCCGTTAACGTTTCCTTTACCCCAAAAATAGAAGAAGATTTTGTATTTCCTTCAGAGTCATTTGAATTACAATCAGTGGGTACTTCAAATGGATTTCGAAGTGAGGGTGGTGAAGTAAAACTGTTTCCTCAAATGAACCAGATGATGGTTGATGGATTCAATACCCAGACAAGGGTTTCAAGTTCGGAGCTGCTTAAGGATGAGTCATCGACACAAGTGGATGAGCAAAAACCCAGAAAGAGAGGGAGAAAGCCTTCCAATGGGAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGGCGCGAGAAGCTTAACCAGAGGTTCTATGCACTAAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTTCTTGGTGATGCCATTACCCATATCACCGATCTCCAGACGAAGATCAGAGTCATTGAAACTGAAAAGCAGATGGTTAACAACAAGGGAAAGCAGTTGCCGGTTCCAGAGATTGATTTTCAGGAACGCCACGGGGATGCAGTTGTCAGGATGAACTTCCCATTGGATTCTCACCCGGTTTCTGATGTCATCCGAACACTAAGGGAACATAAAATTGTACCTCAAGAGTCTAATGTTTCCATAACAGACAATGATAAGGTTATTCATACATTCTCCATTCAAACTCAAGGTGGTGATGCTGAGAAGTTAAGGGAGAAGCTGGTGGCCTTTCTTTCAAAATGA

Protein Analysis

503

Amino Acids

55.93

Weight (kDa)

6.07

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 49 - 235 7.3e-44 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 356 - 402 2.6e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 2 cut(s) 198, 931
AccBSI CCGCTC 1 cut(s) 1084
AccII CGCG 2 cut(s) 290, 1095
AciI CCGC 3 cut(s) 125, 392, 1084
AclI AACGTT 1 cut(s) 795
AclWI GGATC 3 cut(s) 235, 257, 270
AcsI RAATTY 2 cut(s) 11, 292
AcuI CTGAAG 1 cut(s) 822
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 4 cut(s) 54, 618, 868, 1386
AfiI CCNNNNNNNGG 7 cut(s) 198, 240, 272, 931, 957, 958, 1046
AflII CTTAAG 1 cut(s) 980
AjiI CACGTC 1 cut(s) 755
AjuI GAANNNNNNNTTGG 6 cut(s) 511, 543, 688, 720, 1313, 1345
AluBI AGCT 8 cut(s) 163, 281, 349, 364, 976, 1102, 1130, 1486
AluI AGCT 8 cut(s) 163, 281, 349, 364, 976, 1102, 1130, 1486
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 3 cut(s) 235, 257, 270
AlwNI CAGNNNCTG 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 2 cut(s) 122, 1491
ApeKI GCWGC 2 cut(s) 145, 976
ApoI RAATTY 2 cut(s) 11, 292
Asp700I GAANNNNTTC 1 cut(s) 1039
AspLEI GCGC 1 cut(s) 1095
AspS9I GGNCC 2 cut(s) 494, 773
AsuC2I CCSGG 2 cut(s) 129, 1343
AsuHPI GGTGA 9 cut(s) 17, 31, 257, 352, 908, 1186, 1187, 1331, 1472
AsuII TTCGAA 1 cut(s) 883
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 2 cut(s) 494, 773
BamHI GGATCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 157, 963
BccI CCATC 7 cut(s) 242, 266, 410, 925, 932, 1147, 1234
BcnI CCSGG 2 cut(s) 129, 1343
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 3 cut(s) 56, 297, 714
BfmI CTRYAG 1 cut(s) 498
BfrI CTTAAG 1 cut(s) 980
BfuAI ACCTGC 1 cut(s) 533
BisI GCNGC 4 cut(s) 125, 146, 977, 1085
BlsI GCNGC 4 cut(s) 126, 147, 978, 1086
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 129, 1343
Bme18I GGWCC 2 cut(s) 494, 773
BmeT110I CYCGRG 1 cut(s) 767
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 2 cut(s) 494, 773
BmiI GGNNCC 4 cut(s) 61, 264, 774, 1272
BmrFI CCNGG 2 cut(s) 129, 1343
BmsI GCATC 4 cut(s) 529, 1168, 1294, 1453
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 499, 1187
Bpu14I TTCGAA 1 cut(s) 883
BpuEI CTTGAG 3 cut(s) 256, 1374, 1437
BpuMI CCSGG 2 cut(s) 129, 1343
BsaJI CCNNGG 2 cut(s) 267, 1297
Bsc4I CCNNNNNNNGG 7 cut(s) 198, 240, 272, 931, 957, 958, 1046
Bse118I RCCGGY 2 cut(s) 72, 1267
Bse1I ACTGG 2 cut(s) 93, 565
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 267, 1297
BseGI GGATG 7 cut(s) 277, 421, 991, 1012, 1309, 1323, 1356
BseLI CCNNNNNNNGG 7 cut(s) 198, 240, 272, 931, 957, 958, 1046
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 1458
BseNI ACTGG 2 cut(s) 93, 565
BseXI GCAGC 2 cut(s) 157, 963
BseYI CCCAGC 2 cut(s) 281, 593
BsgI GTGCAG 2 cut(s) 164, 344
Bsh1236I CGCG 2 cut(s) 290, 1095
BshFI GGCC 2 cut(s) 124, 1493
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 4 cut(s) 73, 128, 1268, 1343
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 7 cut(s) 198, 240, 272, 931, 957, 958, 1046
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 2 cut(s) 124, 1493
BsoBI CYCGRG 1 cut(s) 767
Bsp119I TTCGAA 1 cut(s) 883
Bsp143I GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
BspACI CCGC 3 cut(s) 125, 392, 1084
BspANI GGCC 2 cut(s) 124, 1493
BspCNI CTCAG 1 cut(s) 1459
BspFNI CGCG 2 cut(s) 290, 1095
BspLI GGNNCC 4 cut(s) 61, 264, 774, 1272
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 533
BspPI GGATC 3 cut(s) 235, 257, 270
BspT104I TTCGAA 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 980
BsrBI CCGCTC 1 cut(s) 1084
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 72, 1267
BsrI ACTGG 2 cut(s) 93, 565
BssAI RCCGGY 2 cut(s) 72, 1267
BssECI CCNNGG 2 cut(s) 267, 1297
BssMI GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 491, 607, 909
Bst6I CTCTTC 2 cut(s) 330, 1173
BstAFI CTTAAG 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 883
BstC8I GCNNGC 3 cut(s) 70, 161, 204
BstDEI CTNAG 4 cut(s) 761, 1124, 1367, 1467
BstDSI CCRYGG 1 cut(s) 1297
BstF5I GGATG 7 cut(s) 277, 421, 991, 1012, 1309, 1323, 1356
BstFNI CGCG 2 cut(s) 290, 1095
BstHHI GCGC 1 cut(s) 1095
BstKTI GATC 6 cut(s) 84, 230, 265, 575, 1201, 1215
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
BstMWI GCNNNNNNNGC 7 cut(s) 151, 160, 287, 590, 1090, 1099, 1127
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 127, 1341
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 2 cut(s) 290, 1095
BstV1I GCAGC 2 cut(s) 157, 963
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 227, 262
BstYI RGATCY 2 cut(s) 227, 262
BsuRI GGCC 2 cut(s) 124, 1493
BtgI CCRYGG 1 cut(s) 1297
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 7 cut(s) 277, 421, 991, 1012, 1309, 1323, 1356
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 4 cut(s) 86, 327, 487, 867
BveI ACCTGC 1 cut(s) 533
Cac8I GCNNGC 3 cut(s) 70, 161, 204
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 1095
Cfr10I RCCGGY 2 cut(s) 72, 1267
Cfr13I GGNCC 2 cut(s) 494, 773
CseI GACGC 1 cut(s) 296
Csp6I GTAC 4 cut(s) 53, 617, 867, 1385
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 4 cut(s) 40, 368, 372, 1070
CviQI GTAC 4 cut(s) 53, 617, 867, 1385
DdeI CTNAG 4 cut(s) 761, 1124, 1367, 1467
DpnI GATC 6 cut(s) 83, 229, 264, 574, 1200, 1214
DpnII GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 330, 1173
EarI CTCTTC 2 cut(s) 330, 1173
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 494, 773
Eco57I CTGAAG 1 cut(s) 822
Eco88I CYCGRG 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 2 cut(s) 373, 466
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 4 cut(s) 43, 371, 375, 1073
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 39, 367, 371, 1069
Fnu4HI GCNGC 4 cut(s) 125, 146, 977, 1085
FokI GGATG 7 cut(s) 284, 428, 998, 1019, 1316, 1330, 1343
Fsp4HI GCNGC 4 cut(s) 125, 146, 977, 1085
FspBI CTAG 3 cut(s) 56, 297, 714
GlaI GCGC 1 cut(s) 1094
GluI GCNGC 4 cut(s) 125, 146, 977, 1085
GsaI CCCAGC 2 cut(s) 285, 597
GsuI CTGGAG 2 cut(s) 499, 1187
HaeIII GGCC 2 cut(s) 124, 1493
HapII CCGG 4 cut(s) 73, 128, 1268, 1343
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 1095
Hin1II CATG 4 cut(s) 43, 371, 375, 1073
Hin6I GCGC 1 cut(s) 1093
HinP1I GCGC 1 cut(s) 1093
HincII GTYRAC 3 cut(s) 169, 793, 1246
HindII GTYRAC 3 cut(s) 169, 793, 1246
HindIII AAGCTT 1 cut(s) 1100
HpaI GTTAAC 2 cut(s) 793, 1246
HpaII CCGG 4 cut(s) 73, 128, 1268, 1343
HphI GGTGA 9 cut(s) 17, 31, 257, 352, 908, 1186, 1187, 1331, 1472
Hpy166II GTNNAC 5 cut(s) 169, 554, 758, 793, 1246
Hpy8I GTNNAC 5 cut(s) 169, 554, 758, 793, 1246
HpyAV CCTTC 2 cut(s) 846, 1050
HpyCH4III ACNGT 3 cut(s) 491, 607, 909
HpyCH4IV ACGT 2 cut(s) 754, 795
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 160, 287, 590, 1090, 1099, 1127
HpyF3I CTNAG 4 cut(s) 761, 1124, 1367, 1467
HpySE526I ACGT 2 cut(s) 754, 795
Hsp92II CATG 4 cut(s) 43, 371, 375, 1073
HspAI GCGC 1 cut(s) 1093
KspAI GTTAAC 2 cut(s) 793, 1246
Kzo9I GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
LmnI GCTCC 3 cut(s) 278, 369, 973
Lsp1109I GCAGC 2 cut(s) 157, 963
LweI GCATC 4 cut(s) 529, 1168, 1294, 1453
MaeI CTAG 3 cut(s) 56, 297, 714
MaeII ACGT 2 cut(s) 754, 795
MalI GATC 6 cut(s) 83, 229, 264, 574, 1200, 1214
MbiI CCGCTC 1 cut(s) 1084
MboI GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
MflI RGATCY 2 cut(s) 227, 262
MluCI AATT 9 cut(s) 11, 134, 178, 184, 292, 397, 525, 851, 1380
MlyI GAGTC 6 cut(s) 56, 512, 851, 998, 1227, 1403
MmeI TCCRAC 1 cut(s) 393
Mph1103I ATGCAT 2 cut(s) 373, 466
MroXI GAANNNNTTC 1 cut(s) 1039
MseI TTAA 5 cut(s) 792, 981, 1104, 1245, 1475
MslI CAYNNNNRTG 2 cut(s) 452, 1302
MspCI CTTAAG 1 cut(s) 980
MspI CCGG 4 cut(s) 73, 128, 1268, 1343
MspR9I CCNGG 2 cut(s) 129, 1343
Mva1269I GAATGC 1 cut(s) 394
MvnI CGCG 2 cut(s) 290, 1095
MwoI GCNNNNNNNGC 7 cut(s) 151, 160, 287, 590, 1090, 1099, 1127
NciI CCSGG 2 cut(s) 129, 1343
NdeII GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
NlaIII CATG 4 cut(s) 43, 371, 375, 1073
NlaIV GGNNCC 4 cut(s) 61, 264, 774, 1272
NsiI ATGCAT 2 cut(s) 373, 466
NspI RCATGY 1 cut(s) 375
NspV TTCGAA 1 cut(s) 883
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 1039
PfeI GAWTC 5 cut(s) 476, 710, 942, 1066, 1334
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 2 cut(s) 198, 931
PkrI GCNGC 4 cut(s) 126, 147, 978, 1086
PleI GAGTC 6 cut(s) 55, 511, 850, 997, 1226, 1402
PpsI GAGTC 6 cut(s) 55, 511, 850, 997, 1226, 1402
Psp1406I AACGTT 1 cut(s) 795
PspFI CCCAGC 2 cut(s) 281, 593
PspN4I GGNNCC 4 cut(s) 61, 264, 774, 1272
PspPI GGNCC 2 cut(s) 494, 773
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 2 cut(s) 227, 262
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 4 cut(s) 54, 618, 868, 1386
RsaNI GTAC 4 cut(s) 53, 617, 867, 1385
RseI CAYNNNNRTG 2 cut(s) 452, 1302
SaqAI TTAA 5 cut(s) 792, 981, 1104, 1245, 1475
SatI GCNGC 4 cut(s) 125, 146, 977, 1085
Sau3AI GATC 6 cut(s) 81, 227, 262, 572, 1198, 1212
Sau96I GGNCC 2 cut(s) 494, 773
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 6 cut(s) 56, 512, 851, 998, 1227, 1403
ScrFI CCNGG 2 cut(s) 129, 1343
SfaNI GCATC 4 cut(s) 529, 1168, 1294, 1453
SfcI CTRYAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 883
SinI GGWCC 2 cut(s) 494, 773
SmiMI CAYNNNNRTG 2 cut(s) 452, 1302
SmlI CTYRAG 4 cut(s) 235, 980, 1389, 1452
SmoI CTYRAG 4 cut(s) 235, 980, 1389, 1452
Sse9I AATT 9 cut(s) 11, 134, 178, 184, 292, 397, 525, 851, 1380
SsiI CCGC 3 cut(s) 125, 392, 1084
SspMI CTAG 3 cut(s) 56, 297, 714
StyD4I CCNGG 2 cut(s) 127, 1341
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 491, 607, 909
TaiI ACGT 2 cut(s) 757, 798
TaqI TCGA 7 cut(s) 176, 215, 479, 569, 883, 995, 1148
TasI AATT 9 cut(s) 11, 134, 178, 184, 292, 397, 525, 851, 1380
TatI WGTACW 1 cut(s) 52
TauI GCSGC 2 cut(s) 127, 1087
TfiI GAWTC 5 cut(s) 476, 710, 942, 1066, 1334
Tru1I TTAA 5 cut(s) 792, 981, 1104, 1245, 1475
Tru9I TTAA 5 cut(s) 792, 981, 1104, 1245, 1475
TscAI CASTG 4 cut(s) 93, 327, 494, 867
TseI GCWGC 2 cut(s) 145, 976
TspDTI ATGAA 5 cut(s) 39, 638, 935, 1334, 1421
TspGWI ACGGA 1 cut(s) 778
TspRI CASTG 4 cut(s) 93, 327, 494, 867
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 2 cut(s) 198, 931
Vha464I CTTAAG 1 cut(s) 980
VpaK11BI GGWCC 2 cut(s) 494, 773
XapI RAATTY 2 cut(s) 11, 292
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 1039
XspI CTAG 3 cut(s) 56, 297, 714
ZrmI AGTACT 1 cut(s) 54
Zsp2I ATGCAT 2 cut(s) 373, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.