Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006620

Physical Location & Seq

Genomic Coordinates Reverse (-)

33136232 .. 33136741

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1202500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAGAAGAAAAAAGAGGTGAAGAAGTGGGTGCTTGAGAAGCTCCACGCGTGTTTTGGCGGTTTGAATGGGGATAATTATGCAAGGAGGTTGGATGGGGTGTTAGATGTGGAGATGTTTCATCTCACTTCAATGTGTTATGCATTTCAACTTGATTCGATCTCACACTGTGGTCCAGGGGAGTCATACAAGTCTGGAAAATCGATATGGGTTTCGGATGCCGGTAGTTGTTTACATCATTACCAGTCAAGGTCATTTTTAGCAAGATTGGCTGGGTTTCAGACAGTGGTGTTTGTACCAATGAAATCAGGAGTTGTGGAACTCGGTTCGGTCAAATCAACTCCGGAAGAACAAAGTTATGTGGATACGGTCAGAAGTGCATTTGGGGAATCTAGTCCTATTCAGGCAAAGGCATTTCCAATGATATTTGGACGGGAACTAAGTCTTGGGGGTCCAAAATCACAATCAGTCAACATTTCCTTTACTCCAAAAATAGAAGAAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

170

Amino Acids

18.68

Weight (kDa)

8.32

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	3 - 128	3.2e-27	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16430
fragaria_vesca	FvH4_2g22150 FvH4_2g22150
malus_domestica	MD05G1202500.v1.1 MD05G1202900.v1.1 MD10G1190000.v1.1
prunus_persica	Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1 Prupe.8G228700_v2.0.a1
pyrus_communis	pycom05g18900 pycom05g18950 pycom10g16360 pycom10g16370
rosa_chinensis	RchiOBHm_Chr6g0288981
rosa_laevigata	RLG00000012333 RLG00000013932
rosa_multiflora	Rmu_sc0000666.1_g000010
rosa_roxburghii	Rroxscaffold_7G00179620
rosa_rugosa	Rorug06G0199900
rosa_samantha	Rh6AG311600 Rh6BG318100 Rh6CG325000 Rh6DG310800
rosa_wichuraiana	Rw6G013790 Rw6G026880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	67, 132, 149
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Aor13HI	TCCGGA	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	173, 452
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	173, 452
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	2 cut(s)	173, 452
BmgT120I	GGNCC	2 cut(s)	173, 452
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	244
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	100, 223
BseNI	ACTGG	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	222, 344
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	203
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	170, 286, 370
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	100, 223
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 269
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	203
BsuI	GTATCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	100, 223
BtsIMutI	CAGTG	2 cut(s)	166, 291
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	173, 452
ClaI	ATCGAT	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	296
CviJI	RGCY	2 cut(s)	43, 272
CviKI_1	RGCY	2 cut(s)	43, 272
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	173, 452
EcoRII	CCWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	145
FaiI	YATR	5 cut(s)	81, 141, 187, 208, 360
FokI	GGATG	2 cut(s)	107, 230
FspBI	CTAG	1 cut(s)	393
GsaI	CCCAGC	1 cut(s)	276
HapII	CCGG	2 cut(s)	222, 344
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	155, 182, 389
HpaII	CCGG	2 cut(s)	222, 344
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	233, 472
Hpy188I	TCNGA	3 cut(s)	217, 282, 374
Hpy188III	TCNNGA	3 cut(s)	195, 309, 344
Hpy8I	GTNNAC	2 cut(s)	233, 472
HpyCH4III	ACNGT	3 cut(s)	170, 286, 370
HpyCH4V	TGCA	4 cut(s)	4, 83, 143, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 269
HpyF3I	CTNAG	1 cut(s)	440
Kpn2I	TCCGGA	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	9 cut(s)	162, 180, 189, 235, 257, 258, 294, 357, 389
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	393
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	4 cut(s)	19, 34, 359, 509
MluCI	AATT	1 cut(s)	76
MluI	ACGCGT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	10, 81
Mph1103I	ATGCAT	1 cut(s)	145
MroI	TCCGGA	1 cut(s)	343
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	2 cut(s)	222, 344
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	40, 269
NdeII	GATC	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	155, 389
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	173, 452
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	173, 452
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	4 cut(s)	21, 45, 92, 254
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	2 cut(s)	173, 452
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	170, 286, 370
TaqI	TCGA	2 cut(s)	158, 203
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	1 cut(s)	76
TfiI	GAWTC	2 cut(s)	155, 389
TscAI	CASTG	2 cut(s)	173, 291
TspDTI	ATGAA	2 cut(s)	110, 317
TspRI	CASTG	2 cut(s)	173, 291
VpaK11BI	GGWCC	2 cut(s)	173, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XspI	CTAG	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.