pycom05g18950
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
21888207 .. 21889715
1509 bp
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UTR
Exon/CDS
Intron
pycom05g18950.1

Sequence Viewer

Length: 1509 bp
ATGGGTGAGAAATTTTGGCTGAATGAAGAAGACAAGGTCGTGATGGAGTCAGTACTGGGTACCGAAGCTTGCCAGTTCTTGATCTCACTGGCTTCTGAAAATGTTTTGCCAGAGTTGATTAGGCCGCCGGGTAAATTGGGTGTGCAGCAGGGTCTGTGCCAGCTTGTCAATGGGTCGAATTGGAATTATGCCATTTTCTGGCAGGCTGTTAGCAAGAAATCTGATCGATCTGCCTTGATTTGGGGTGATGGTCATTGCAGAGACACCAAGGGCGGTGGAGCTGGGGACGTGAATTCTAGTCGGGATGGTAGTTTGGAGGCAATGCAGAAGAAAGAAGAGGTGAAGAAGTGGGTGCTTGAGAAGCTCCACGCGTGTTTTGGCGGTTTGAATGGGGATAATTATGCAAGGAGGTTGGATGGGGTGTCAGATGTGGAGATGTTTCATCTCACTTCAATGTGTTATGCATTTCAACTTGAATCGATCTCACACTGCGGTCCTGGGGAGTCGTACAAGTCCGGAAAATCGATTTGGGTTTCGGATGCCGGTAGTTGTTTACATCATTACCAGTCGAGGTCATTTTTAGCAAGATTGGCTGGGTTTCAGACAGTGGTGTTTGTACCGATGAAATCAGGAGTTGTGGAACTCGGTTCGGTCAAATCAACTTCGGAAGAACAAAGTTATGTGGATATGGTCAGAAGTGCATTTGGGGAGTCTAGTCCTATTCAGGCAAAGGCATTTCCAATGATATTTGGACGTGAACTAAGTCTCGGGGGTCCAAAATCACAATCCGTCAACATTTCCTTTACTCCAAAAGTAGAAGAAGATTTTGCATTTCCTCCAGAATCGTTTGAATTACAATCAGTAGGCACTTCAAATGGATGTCGAAGTGACGATAGTGAAGTAAAACTGTTTCCGCAAATGAACCAAATGATGGTTGACGGTTTCAATGTTCAGACAAGAGTCTCAAGTTCGGAGCTGCTCAAGGATGAGTCCTCGGCACAAATTGATGAGCGGAAACCCAGAAAGAGAGGGAGAAAGCCTGCCAATGGGAGAGAAGAACCATTGAATCATGTGGAAGCAGAACGGCAGAGGCGTGAGAAGCTTAACCAGAGGTTCTATGCACTAAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTTCTTGGTGATGCCATTACCTATATCACCGATCTACAGATGAAGATCAGAGTCATGGAAACTGAAAAGCAGATGGTAAACAACAAGGGAAAGCAGTTGCCGGTTCCAGAGATTGATTTTCAGGAACGCCTCGAGGATGCAGTTGTGAGGATGAACTGCCCATTGGATTCTCACCCGGTTTCTGAAGTCTTCAGAACACTTCGGGAACATAAAATTGTAGCTCAAGAGTCTAACGTTTCCATAACAGACAACGATAAGGTTATTCATACATTCTCCATTCAAACTCAAAGCGGTGATGCCGAGCAATTAAAGGAGAAGCTGGTGGCCTGTCTTTCAAAATGA

Protein Analysis

503

Amino Acids

56.02

Weight (kDa)

6.02

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 49 - 235 9.6e-46 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 356 - 402 6.4e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1298
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 2 cut(s) 198, 931
AccBSI CCGCTC 1 cut(s) 1012
AccII CGCG 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 7 cut(s) 125, 273, 381, 492, 914, 1012, 1458
AclI AACGTT 1 cut(s) 1401
AcsI RAATTY 2 cut(s) 11, 292
AcuI CTGAAG 2 cut(s) 1342, 1371
AfaI GTAC 4 cut(s) 54, 61, 509, 618
AfiI CCNNNNNNNGG 4 cut(s) 198, 240, 931, 1046
AflIII ACRYGT 1 cut(s) 369
AjiI CACGTC 2 cut(s) 289, 755
AjnI CCWGG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 4 cut(s) 511, 543, 1313, 1345
AluBI AGCT 9 cut(s) 68, 163, 281, 364, 976, 1102, 1130, 1388, 1486
AluI AGCT 9 cut(s) 68, 163, 281, 364, 976, 1102, 1130, 1388, 1486
Alw26I GTCTC 3 cut(s) 255, 770, 967
AlwNI CAGNNNCTG 1 cut(s) 154
Ama87I CYCGRG 2 cut(s) 767, 1298
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 2 cut(s) 122, 1491
ApeKI GCWGC 2 cut(s) 145, 976
ApoI RAATTY 2 cut(s) 11, 292
Asp718I GGTACC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 494, 773
AsuC2I CCSGG 2 cut(s) 129, 1343
AsuHPI GGTGA 7 cut(s) 17, 257, 352, 1186, 1187, 1331, 1472
AvaI CYCGRG 2 cut(s) 767, 1298
AvaII GGWCC 2 cut(s) 494, 773
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 36, 1348
BbvI GCAGC 2 cut(s) 157, 963
BccI CCATC 7 cut(s) 37, 242, 299, 410, 925, 1147, 1234
BceAI ACGGC 1 cut(s) 1100
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 2 cut(s) 129, 1343
BcoDI GTCTC 3 cut(s) 255, 770, 967
BfaI CTAG 2 cut(s) 297, 714
BfmI CTRYAG 1 cut(s) 1202
BisI GCNGC 3 cut(s) 125, 146, 977
BlsI GCNGC 3 cut(s) 126, 147, 978
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 3 cut(s) 129, 498, 1343
Bme18I GGWCC 2 cut(s) 494, 773
BmeT110I CYCGRG 2 cut(s) 767, 1298
BmgBI CACGTC 2 cut(s) 289, 755
BmgT120I GGNCC 2 cut(s) 494, 773
BmiI GGNNCC 3 cut(s) 61, 774, 1272
BmrFI CCNGG 3 cut(s) 129, 498, 1343
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 4 cut(s) 529, 1168, 1294, 1453
BmuI ACTGGG 1 cut(s) 65
BoxI GACNNNNGTC 1 cut(s) 959
BpiI GAAGAC 2 cut(s) 36, 1348
BpmI CTGGAG 1 cut(s) 822
BpuEI CTTGAG 4 cut(s) 377, 949, 965, 1374
BpuMI CCSGG 2 cut(s) 129, 1343
Bsa29I ATCGAT 3 cut(s) 226, 479, 524
BsaBI GATNNNNATC 1 cut(s) 1211
BsaJI CCNNGG 3 cut(s) 267, 497, 993
BsaWI WCCGGW 1 cut(s) 515
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 240, 931, 1046
Bse118I RCCGGY 2 cut(s) 542, 1267
Bse1I ACTGG 4 cut(s) 60, 73, 93, 565
Bse3DI GCAATG 2 cut(s) 253, 327
Bse8I GATNNNNATC 1 cut(s) 1211
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 1 cut(s) 498
BseCI ATCGAT 3 cut(s) 226, 479, 524
BseDI CCNNGG 3 cut(s) 267, 497, 993
BseGI GGATG 7 cut(s) 310, 421, 544, 884, 991, 1309, 1323
BseJI GATNNNNATC 1 cut(s) 1211
BseLI CCNNNNNNNGG 4 cut(s) 198, 240, 931, 1046
BseMI GCAATG 2 cut(s) 253, 327
BseNI ACTGG 4 cut(s) 60, 73, 93, 565
BseXI GCAGC 2 cut(s) 157, 963
BseYI CCCAGC 2 cut(s) 281, 593
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 2 cut(s) 124, 1493
BshNI GGYRCC 1 cut(s) 59
BshVI ATCGAT 3 cut(s) 226, 479, 524
BsiHKCI CYCGRG 2 cut(s) 767, 1298
BsiSI CCGG 5 cut(s) 128, 516, 543, 1268, 1343
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 198, 240, 931, 1046
BsmAI GTCTC 3 cut(s) 255, 770, 967
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 124, 1493
BsoBI CYCGRG 2 cut(s) 767, 1298
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
BspACI CCGC 7 cut(s) 125, 273, 381, 492, 914, 1012, 1458
BspANI GGCC 2 cut(s) 124, 1493
BspDI ATCGAT 3 cut(s) 226, 479, 524
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 3 cut(s) 61, 774, 1272
BspT107I GGYRCC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 1012
BsrDI GCAATG 2 cut(s) 253, 327
BsrFI RCCGGY 2 cut(s) 542, 1267
BsrI ACTGG 4 cut(s) 60, 73, 93, 565
BssAI RCCGGY 2 cut(s) 542, 1267
BssECI CCNNGG 3 cut(s) 267, 497, 993
BssMI GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 3 cut(s) 607, 909, 941
Bst6I CTCTTC 2 cut(s) 330, 1173
BstC8I GCNNGC 4 cut(s) 70, 161, 204, 1041
BstDEI CTNAG 2 cut(s) 761, 1124
BstF5I GGATG 7 cut(s) 310, 421, 544, 884, 991, 1309, 1323
BstFNI CGCG 1 cut(s) 371
BstKTI GATC 6 cut(s) 84, 226, 230, 483, 1201, 1215
BstMAI GTCTC 3 cut(s) 255, 770, 967
BstMBI GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
BstMWI GCNNNNNNNGC 4 cut(s) 361, 590, 1099, 1127
BstNI CCWGG 1 cut(s) 498
BstPAI GACNNNNGTC 1 cut(s) 959
BstSCI CCNGG 3 cut(s) 127, 496, 1341
BstSFI CTRYAG 1 cut(s) 1202
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 157, 963
BstV2I GAAGAC 2 cut(s) 36, 1348
Bsu15I ATCGAT 3 cut(s) 226, 479, 524
BsuRI GGCC 2 cut(s) 124, 1493
BsuTUI ATCGAT 3 cut(s) 226, 479, 524
BtrI CACGTC 2 cut(s) 289, 755
BtsCI GGATG 7 cut(s) 310, 421, 544, 884, 991, 1309, 1323
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 3 cut(s) 86, 487, 612
Cac8I GCNNGC 4 cut(s) 70, 161, 204, 1041
CaiI CAGNNNCTG 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 542, 1267
Cfr13I GGNCC 2 cut(s) 494, 773
ClaI ATCGAT 3 cut(s) 226, 479, 524
Csp6I GTAC 4 cut(s) 53, 60, 508, 617
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 2 cut(s) 1070, 1222
CviQI GTAC 4 cut(s) 53, 60, 508, 617
DdeI CTNAG 2 cut(s) 761, 1124
DpnI GATC 6 cut(s) 83, 225, 229, 482, 1200, 1214
DpnII GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
Eam1104I CTCTTC 2 cut(s) 330, 1173
EarI CTCTTC 2 cut(s) 330, 1173
Eco130I CCWWGG 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 494, 773
Eco57I CTGAAG 2 cut(s) 1342, 1371
Eco88I CYCGRG 2 cut(s) 767, 1298
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 1073, 1225
FalI AAGNNNNNCTT 2 cut(s) 1152, 1184
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 1069, 1221
Fnu4HI GCNGC 3 cut(s) 125, 146, 977
FokI GGATG 7 cut(s) 317, 428, 551, 891, 998, 1316, 1330
Fsp4HI GCNGC 3 cut(s) 125, 146, 977
FspBI CTAG 2 cut(s) 297, 714
GluI GCNGC 3 cut(s) 125, 146, 977
GsaI CCCAGC 2 cut(s) 285, 597
GsuI CTGGAG 1 cut(s) 822
HaeIII GGCC 2 cut(s) 124, 1493
HapII CCGG 5 cut(s) 128, 516, 543, 1268, 1343
Hin1II CATG 2 cut(s) 1073, 1225
HincII GTYRAC 2 cut(s) 793, 937
HindII GTYRAC 2 cut(s) 793, 937
HindIII AAGCTT 2 cut(s) 66, 1100
HpaII CCGG 5 cut(s) 128, 516, 543, 1268, 1343
HphI GGTGA 7 cut(s) 17, 257, 352, 1186, 1187, 1331, 1472
Hpy166II GTNNAC 5 cut(s) 554, 758, 793, 937, 1246
Hpy8I GTNNAC 5 cut(s) 554, 758, 793, 937, 1246
HpyCH4III ACNGT 3 cut(s) 607, 909, 941
HpyCH4IV ACGT 3 cut(s) 288, 754, 1401
HpyCH4V TGCA 9 cut(s) 145, 258, 325, 404, 464, 701, 830, 1121, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 361, 590, 1099, 1127
HpyF3I CTNAG 2 cut(s) 761, 1124
HpySE526I ACGT 3 cut(s) 288, 754, 1401
Hsp92II CATG 2 cut(s) 1073, 1225
Kpn2I TCCGGA 1 cut(s) 515
KpnI GGTACC 1 cut(s) 63
Kzo9I GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
LmnI GCTCC 3 cut(s) 278, 369, 973
Lsp1109I GCAGC 2 cut(s) 157, 963
LweI GCATC 4 cut(s) 529, 1168, 1294, 1453
MaeI CTAG 2 cut(s) 297, 714
MaeII ACGT 3 cut(s) 288, 754, 1401
MaeIII GTNAC 1 cut(s) 887
MalI GATC 6 cut(s) 83, 225, 229, 482, 1200, 1214
MbiI CCGCTC 1 cut(s) 1012
MboI GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
MluI ACGCGT 1 cut(s) 369
MlyI GAGTC 7 cut(s) 56, 512, 719, 969, 998, 1227, 1403
MmeI TCCRAC 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 466
MroI TCCGGA 1 cut(s) 515
MseI TTAA 2 cut(s) 1104, 1475
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 5 cut(s) 128, 516, 543, 1268, 1343
MspR9I CCNGG 3 cut(s) 129, 498, 1343
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 4 cut(s) 361, 590, 1099, 1127
NciI CCSGG 2 cut(s) 129, 1343
NdeII GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
NlaIII CATG 2 cut(s) 1073, 1225
NlaIV GGNNCC 3 cut(s) 61, 774, 1272
NmeAIII GCCGAG 2 cut(s) 974, 1492
NmuCI GTSAC 1 cut(s) 887
NsiI ATGCAT 1 cut(s) 466
PaeR7I CTCGAG 1 cut(s) 1298
PcsI WCGNNNNNNNCGW 1 cut(s) 1090
PfeI GAWTC 4 cut(s) 476, 842, 1066, 1334
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 2 cut(s) 198, 931
PkrI GCNGC 3 cut(s) 126, 147, 978
PleI GAGTC 7 cut(s) 55, 511, 718, 968, 997, 1226, 1402
PpsI GAGTC 7 cut(s) 55, 511, 718, 968, 997, 1226, 1402
PshAI GACNNNNGTC 1 cut(s) 959
Psp1406I AACGTT 1 cut(s) 1401
Psp6I CCWGG 1 cut(s) 496
PspFI CCCAGC 2 cut(s) 281, 593
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 3 cut(s) 61, 774, 1272
PspPI GGNCC 2 cut(s) 494, 773
PspXI VCTCGAGB 1 cut(s) 1298
PstNI CAGNNNCTG 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 4 cut(s) 54, 61, 509, 618
RsaNI GTAC 4 cut(s) 53, 60, 508, 617
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 1104, 1475
SatI GCNGC 3 cut(s) 125, 146, 977
Sau3AI GATC 6 cut(s) 81, 223, 227, 480, 1198, 1212
Sau96I GGNCC 2 cut(s) 494, 773
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 7 cut(s) 56, 512, 719, 969, 998, 1227, 1403
ScrFI CCNGG 3 cut(s) 129, 498, 1343
SfaNI GCATC 4 cut(s) 529, 1168, 1294, 1453
SfcI CTRYAG 1 cut(s) 1202
Sfr274I CTCGAG 1 cut(s) 1298
SinI GGWCC 2 cut(s) 494, 773
SlaI CTCGAG 1 cut(s) 1298
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 5 cut(s) 356, 964, 980, 1298, 1389
SmoI CTYRAG 5 cut(s) 356, 964, 980, 1298, 1389
SsiI CCGC 7 cut(s) 125, 273, 381, 492, 914, 1012, 1458
SspMI CTAG 2 cut(s) 297, 714
StyD4I CCNGG 3 cut(s) 127, 496, 1341
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 3 cut(s) 607, 909, 941
TaiI ACGT 3 cut(s) 291, 757, 1404
TaqI TCGA 8 cut(s) 176, 226, 479, 524, 569, 883, 1148, 1299
TaqII GACCGA 1 cut(s) 640
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 4 cut(s) 476, 842, 1066, 1334
Tru1I TTAA 2 cut(s) 1104, 1475
Tru9I TTAA 2 cut(s) 1104, 1475
TscAI CASTG 3 cut(s) 93, 494, 612
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 2 cut(s) 145, 976
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 7 cut(s) 39, 431, 638, 935, 1223, 1334, 1421
TspGWI ACGGA 1 cut(s) 778
TspRI CASTG 3 cut(s) 93, 494, 612
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 2 cut(s) 198, 931
VpaK11BI GGWCC 2 cut(s) 494, 773
XapI RAATTY 2 cut(s) 11, 292
XcmI CCANNNNNNNNNTGG 2 cut(s) 167, 374
XhoI CTCGAG 1 cut(s) 1298
XspI CTAG 2 cut(s) 297, 714
ZrmI AGTACT 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.