RLG00000012333
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
17564643 .. 17568011
3369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012333

Sequence Viewer

Length: 1749 bp
ATGTTCAAGTTGAAGAACAAAACCCTGTTGATGATTATGCTAGTGGCGGTTTCCTTGTTGGTCATTCTTGGAGCTGCAGTGGGTCGGCCTTTGGGACATGGCAGCAGCAGTGGCAGGATGATGAAACAGATGAGCACCACTACTTTTGGTGTGAAATCCACGGCGAAGGCGGCGGTGACATCTTCTCCATTTTTAGACCCGCAGGATAAAGGGGATGTGCCGCGAGAAATTAAGATGGGTGAGAAGCTTTGGGTGAATGAAGAAGAAAAGGTCATAGTGGAGTCAGTGCTAGGCACCGAAGCGTGCCAGATGTTGATCTCATTGGCTTCGGAGAACTTTTTGTCCGACTTGGCTAGGCCTCCAGGACAATTGGGAGTGCAGCAGGGGCTGTTCCAGCTTGTCCAAGGGTCCAGTTGGGATTACGCCGTCTTCTGGCAGGTTGTGGGATTGAAATCTGGTGGAGCTGCCTTGATTTGGGGCGATGGACATTGCAGAGACAGCAAGGGTGGTGGAGTTGGAGACGAGAGTTCTAGTAGAGATAGCAACTTGGAGGGAATGCAGAAGAAGAATGTGGAGGTGAGGAAGTGGGTGCTTGGGAAGCTCCATTCATGTTTCGGTGGTTCGGGTGAGGATAACTATGTGAGGAGGTTGGATCGGTTGTCAGATGTGGAAATGTTTTACCTTACTTCAATGTACTTTAAATTTCAACTTGATTCACCGTATGGTCCTGGGGAGTCGTACAAGTCTTGTAAATCAATTTGGGTTTCAAATGTTACTAGTTGCTTACATCATTACCAGTCGAGATCATGTTTAGCTAGATTGGCAGGGTTCCAAACAGTGGTGTTTGTACCTATGAAATCAGGAGTTGTGGAGCTTGGTTCAGTCAAATCAATTCCGGAAGAACAGAATATTGTGGATGTGGTCAGAAGTGTATTTGGGGAATCTAGCTCTGTTCAAGCAAAGGTATATCCAAAGATTTTTGGACATGAGCTAAGTCTCGGTGGTCCAAAATCACAACCGATTAATATTGCCTTTTGCCCAAAGGTAGAGACTGACTCTTCATTTCCTTCAGAATCTTTTGACTTACAAGCAATAGGCACTTCAAACGGATGTCGAACTGAGGATAATGAAGTTAAACTGTTTCCGCACTTGAGCCAAATTATGTCTGGGAATTTCAGTTCTACAGCTGGTGTTTCAAGTTCAGAGCTGCCTAAAGATGAGTCATCGGCACAAATTGATGAAAGGAAACCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGAAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGGCGTGAGAAGCTTAACCAGCGGTTTTACGCACTTAGAGCTGTTGTTCCTAACATATCGAAGATGGATAAAGCCTCTCTCCTTGGTGATGCTATTACCTACATCAACGATCTCCAGATGAAGATCAGGGTCATGGAAACTGAGAAGCAGATGGGAAACAGCAGCCAAATGCAGTTCCCAGTTCCAGAGATTGATTTCCAGGAACGGCACGAGGATGCTGTTGTGAAGATGAACTGCCCGCTGGATTCTCACCCGGTTTCTGACATCATCAGAACACTTAAGGAACATAACATTGTAGCTCAAGATACTAATGTTTCCGTAACAGACGATGACACAGTTATTCATACATTCTCCATTCCTACTCAAGGTGGTGATGCCGAGCAGTTAAAGGAGAAGCTGGTGGCCTCTCTCTCAAAATCATCCATGTAA

Protein Analysis

583

Amino Acids

64.09

Weight (kDa)

6.49

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 127 - 312 5.9e-45 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 433 - 479 3e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccB1I GGYRCC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 838
AccBSI CCGCTC 1 cut(s) 1315
AccII CGCG 1 cut(s) 223
AccIII TCCGGA 1 cut(s) 895
AciI CCGC 9 cut(s) 47, 170, 173, 200, 221, 1145, 1315, 1342, 1559
AclWI GGATC 1 cut(s) 660
AcsI RAATTY 2 cut(s) 701, 1171
AcuI CTGAAG 1 cut(s) 1053
AfaI GTAC 3 cut(s) 695, 740, 849
AfiI CCNNNNNNNGG 5 cut(s) 432, 474, 838, 1277, 1685
AflII CTTAAG 1 cut(s) 1598
AhlI ACTAGT 1 cut(s) 776
AjnI CCWGG 3 cut(s) 361, 727, 1518
AloI GAACNNNNNNTCC 4 cut(s) 326, 358, 1162, 1194
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 4 cut(s) 489, 513, 1001, 1043
AlwI GGATC 1 cut(s) 660
AlwNI CAGNNNCTG 1 cut(s) 388
Aor13HI TCCGGA 1 cut(s) 895
AoxI GGCC 3 cut(s) 86, 356, 1722
ApeKI GCWGC 7 cut(s) 74, 102, 105, 379, 464, 1207, 1482
ApoI RAATTY 2 cut(s) 701, 1171
AseI ATTAAT 1 cut(s) 1023
AspS9I GGNCC 3 cut(s) 408, 725, 1004
AsuC2I CCSGG 1 cut(s) 1574
AsuHPI GGTGA 9 cut(s) 187, 251, 265, 589, 638, 708, 1418, 1562, 1703
AvaII GGWCC 3 cut(s) 408, 725, 1004
BaeI ACNNNNGTAYC 2 cut(s) 1617, 1650
BanI GGYRCC 1 cut(s) 293
BauI CACGAG 1 cut(s) 1529
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 7 cut(s) 61, 114, 117, 391, 451, 1194, 1494
BccI CCATC 4 cut(s) 229, 476, 1378, 1465
BceAI ACGGC 3 cut(s) 177, 410, 1541
BciT130I CCWGG 3 cut(s) 363, 729, 1520
BcnI CCSGG 1 cut(s) 1574
BcoDI GTCTC 4 cut(s) 489, 513, 1001, 1043
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 8 cut(s) 41, 290, 354, 531, 777, 816, 945, 1251
BfmI CTRYAG 2 cut(s) 75, 1182
BfrI CTTAAG 1 cut(s) 1598
BfuAI ACCTGC 1 cut(s) 427
Bme1390I CCNGG 4 cut(s) 363, 729, 1520, 1574
Bme18I GGWCC 3 cut(s) 408, 725, 1004
BmgT120I GGNCC 3 cut(s) 408, 725, 1004
BmiI GGNNCC 3 cut(s) 295, 409, 830
BmrFI CCNGG 4 cut(s) 363, 729, 1520, 1574
BmrI ACTGGG 1 cut(s) 1493
BmsI GCATC 3 cut(s) 1399, 1525, 1684
BmuI ACTGGG 1 cut(s) 1493
BpiI GAAGAC 1 cut(s) 421
BplI GAGNNNNNCTC 2 cut(s) 1040, 1072
BpmI CTGGAG 2 cut(s) 345, 1418
BpuEI CTTGAG 3 cut(s) 1171, 1605, 1668
BpuMI CCSGG 1 cut(s) 1574
BsaBI GATNNNNATC 3 cut(s) 314, 451, 1442
BsaJI CCNNGG 4 cut(s) 159, 403, 728, 1402
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 169, 199
Bsc4I CCNNNNNNNGG 5 cut(s) 432, 474, 838, 1277, 1685
Bse1I ACTGG 3 cut(s) 411, 796, 1499
Bse3DI GCAATG 1 cut(s) 487
Bse8I GATNNNNATC 3 cut(s) 314, 451, 1442
BseAI TCCGGA 1 cut(s) 895
BseBI CCWGG 3 cut(s) 363, 729, 1520
BseDI CCNNGG 4 cut(s) 159, 403, 728, 1402
BseGI GGATG 6 cut(s) 123, 220, 922, 1115, 1540, 1739
BseJI GATNNNNATC 3 cut(s) 314, 451, 1442
BseLI CCNNNNNNNGG 5 cut(s) 432, 474, 838, 1277, 1685
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 1110, 1452
BseNI ACTGG 3 cut(s) 411, 796, 1499
BseRI GAGGAG 1 cut(s) 658
BseXI GCAGC 7 cut(s) 61, 114, 117, 391, 451, 1194, 1494
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 88, 358, 1724
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 896, 1574
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 5 cut(s) 432, 474, 838, 1277, 1685
BsmAI GTCTC 4 cut(s) 489, 513, 1001, 1043
BsmBI CGTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 3 cut(s) 88, 358, 1724
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 895
Bsp143I GATC 5 cut(s) 315, 652, 803, 1429, 1443
BspACI CCGC 9 cut(s) 47, 170, 173, 200, 221, 1145, 1315, 1342, 1559
BspANI GGCC 3 cut(s) 88, 358, 1724
BspCNI CTCAG 2 cut(s) 1111, 1453
BspEI TCCGGA 1 cut(s) 895
BspFNI CGCG 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 295, 409, 830
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 1598
BsrBI CCGCTC 1 cut(s) 1315
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 3 cut(s) 411, 796, 1499
BssECI CCNNGG 4 cut(s) 159, 403, 728, 1402
BssMI GATC 5 cut(s) 315, 652, 803, 1429, 1443
BssSI CACGAG 1 cut(s) 1529
BssT1I CCWWGG 2 cut(s) 403, 1402
Bst2BI CACGAG 1 cut(s) 1529
Bst2UI CCWGG 3 cut(s) 363, 729, 1520
Bst4CI ACNGT 4 cut(s) 720, 838, 1140, 1657
Bst6I CTCTTC 2 cut(s) 1063, 1276
BstAFI CTTAAG 1 cut(s) 1598
BstC8I GCNNGC 3 cut(s) 304, 1272, 1559
BstDEI CTNAG 4 cut(s) 992, 1119, 1355, 1461
BstDSI CCRYGG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 1683
BstF5I GGATG 6 cut(s) 123, 220, 922, 1115, 1540, 1739
BstFNI CGCG 1 cut(s) 223
BstKTI GATC 5 cut(s) 318, 655, 806, 1432, 1446
BstMAI GTCTC 4 cut(s) 489, 513, 1001, 1043
BstMBI GATC 5 cut(s) 315, 652, 803, 1429, 1443
BstNI CCWGG 3 cut(s) 363, 729, 1520
BstSCI CCNGG 4 cut(s) 361, 727, 1518, 1572
BstSFI CTRYAG 2 cut(s) 75, 1182
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 7 cut(s) 61, 114, 117, 391, 451, 1194, 1494
BstV2I GAAGAC 1 cut(s) 421
BsuRI GGCC 3 cut(s) 88, 358, 1724
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 6 cut(s) 123, 220, 922, 1115, 1540, 1739
BtsI GCAGTG 2 cut(s) 84, 115
BtsIMutI CAGTG 4 cut(s) 84, 115, 291, 843
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 3 cut(s) 304, 1272, 1559
CaiI CAGNNNCTG 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 408, 725, 1004
Csp6I GTAC 3 cut(s) 694, 739, 848
CspCI CAANNNNNGTGG 4 cut(s) 127, 162, 490, 525
CviAII CATG 7 cut(s) 98, 609, 807, 986, 1301, 1453, 1744
CviQI GTAC 3 cut(s) 694, 739, 848
DdeI CTNAG 4 cut(s) 992, 1119, 1355, 1461
DpnI GATC 5 cut(s) 317, 654, 805, 1431, 1445
DpnII GATC 5 cut(s) 315, 652, 803, 1429, 1443
DraI TTTAAA 1 cut(s) 700
Eam1104I CTCTTC 2 cut(s) 1063, 1276
EarI CTCTTC 2 cut(s) 1063, 1276
Eco130I CCWWGG 2 cut(s) 403, 1402
Eco147I AGGCCT 1 cut(s) 358
Eco47I GGWCC 3 cut(s) 408, 725, 1004
Eco57I CTGAAG 1 cut(s) 1053
EcoNI CCTNNNNNAGG 1 cut(s) 1683
EcoRII CCWGG 3 cut(s) 361, 727, 1518
EcoT14I CCWWGG 2 cut(s) 403, 1402
ErhI CCWWGG 2 cut(s) 403, 1402
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 7 cut(s) 101, 612, 810, 989, 1304, 1456, 1747
FaqI GGGAC 1 cut(s) 108
FatI CATG 7 cut(s) 97, 608, 806, 985, 1300, 1452, 1743
FauI CCCGC 2 cut(s) 207, 1566
FokI GGATG 6 cut(s) 130, 227, 929, 1122, 1547, 1726
FspBI CTAG 8 cut(s) 41, 290, 354, 531, 777, 816, 945, 1251
GsuI CTGGAG 2 cut(s) 345, 1418
HaeIII GGCC 3 cut(s) 88, 358, 1724
HapII CCGG 2 cut(s) 896, 1574
Hin1II CATG 7 cut(s) 101, 612, 810, 989, 1304, 1456, 1747
HindIII AAGCTT 2 cut(s) 245, 1331
HinfI GANTC 9 cut(s) 281, 713, 734, 941, 1055, 1073, 1220, 1297, 1565
HpaII CCGG 2 cut(s) 896, 1574
HphI GGTGA 9 cut(s) 187, 251, 265, 589, 638, 708, 1418, 1562, 1703
Hpy188I TCNGA 8 cut(s) 331, 346, 664, 926, 1072, 1204, 1582, 1592
Hpy188III TCNNGA 6 cut(s) 801, 861, 896, 1435, 1505, 1622
HpyAV CCTTC 2 cut(s) 160, 1077
HpyCH4III ACNGT 4 cut(s) 720, 838, 1140, 1657
HpyCH4V TGCA 5 cut(s) 77, 379, 492, 559, 1492
HpyF3I CTNAG 4 cut(s) 992, 1119, 1355, 1461
Hsp92II CATG 7 cut(s) 101, 612, 810, 989, 1304, 1456, 1747
Kpn2I TCCGGA 1 cut(s) 895
Kzo9I GATC 5 cut(s) 315, 652, 803, 1429, 1443
LmnI GCTCC 4 cut(s) 71, 461, 606, 871
Lsp1109I GCAGC 7 cut(s) 61, 114, 117, 391, 451, 1194, 1494
LweI GCATC 3 cut(s) 1399, 1525, 1684
MaeI CTAG 8 cut(s) 41, 290, 354, 531, 777, 816, 945, 1251
MaeIII GTNAC 3 cut(s) 175, 772, 1639
MalI GATC 5 cut(s) 317, 654, 805, 1431, 1445
MbiI CCGCTC 1 cut(s) 1315
MboI GATC 5 cut(s) 315, 652, 803, 1429, 1443
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 8 cut(s) 228, 368, 701, 756, 891, 1158, 1171, 1233
MlyI GAGTC 4 cut(s) 290, 743, 1049, 1229
MmeI TCCRAC 3 cut(s) 369, 496, 630
MroI TCCGGA 1 cut(s) 895
MseI TTAA 7 cut(s) 231, 699, 1023, 1134, 1335, 1599, 1706
MslI CAYNNNNRTG 1 cut(s) 1533
MspA1I CMGCKG 3 cut(s) 1187, 1342, 1561
MspCI CTTAAG 1 cut(s) 1598
MspI CCGG 2 cut(s) 896, 1574
MspR9I CCNGG 4 cut(s) 363, 729, 1520, 1574
MunI CAATTG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 561
MvaI CCWGG 3 cut(s) 363, 729, 1520
MvnI CGCG 1 cut(s) 223
NciI CCSGG 1 cut(s) 1574
NdeII GATC 5 cut(s) 315, 652, 803, 1429, 1443
NlaIII CATG 7 cut(s) 101, 612, 810, 989, 1304, 1456, 1747
NlaIV GGNNCC 3 cut(s) 295, 409, 830
NmeAIII GCCGAG 1 cut(s) 1723
NmuCI GTSAC 1 cut(s) 175
PceI AGGCCT 1 cut(s) 358
PctI GAATGC 1 cut(s) 561
PfeI GAWTC 5 cut(s) 713, 941, 1073, 1297, 1565
PflMI CCANNNNNTGG 1 cut(s) 838
PfoI TCCNGGA 2 cut(s) 361, 1518
PleI GAGTC 4 cut(s) 289, 742, 1049, 1228
PpsI GAGTC 4 cut(s) 289, 742, 1049, 1228
PshBI ATTAAT 1 cut(s) 1023
Psp6I CCWGG 3 cut(s) 361, 727, 1518
PspGI CCWGG 3 cut(s) 361, 727, 1518
PspN4I GGNNCC 3 cut(s) 295, 409, 830
PspPI GGNCC 3 cut(s) 408, 725, 1004
PstI CTGCAG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 3 cut(s) 695, 740, 849
RsaNI GTAC 3 cut(s) 694, 739, 848
RseI CAYNNNNRTG 1 cut(s) 1533
SaqAI TTAA 7 cut(s) 231, 699, 1023, 1134, 1335, 1599, 1706
Sau3AI GATC 5 cut(s) 315, 652, 803, 1429, 1443
Sau96I GGNCC 3 cut(s) 408, 725, 1004
SchI GAGTC 4 cut(s) 290, 743, 1049, 1229
ScrFI CCNGG 4 cut(s) 363, 729, 1520, 1574
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 3 cut(s) 1399, 1525, 1684
SfcI CTRYAG 2 cut(s) 75, 1182
SinI GGWCC 3 cut(s) 408, 725, 1004
SmiMI CAYNNNNRTG 1 cut(s) 1533
SmlI CTYRAG 4 cut(s) 1150, 1598, 1620, 1683
SmoI CTYRAG 4 cut(s) 1150, 1598, 1620, 1683
SpeI ACTAGT 1 cut(s) 776
Sse9I AATT 8 cut(s) 228, 368, 701, 756, 891, 1158, 1171, 1233
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 9 cut(s) 47, 170, 173, 200, 221, 1145, 1315, 1342, 1559
SspI AATATT 2 cut(s) 910, 1027
SspMI CTAG 8 cut(s) 41, 290, 354, 531, 777, 816, 945, 1251
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 4 cut(s) 361, 727, 1518, 1572
StyI CCWWGG 2 cut(s) 403, 1402
TaaI ACNGT 4 cut(s) 720, 838, 1140, 1657
TaqI TCGA 3 cut(s) 800, 1114, 1379
TasI AATT 8 cut(s) 228, 368, 701, 756, 891, 1158, 1171, 1233
TatI WGTACW 1 cut(s) 693
TauI GCSGC 3 cut(s) 173, 223, 1318
TfiI GAWTC 5 cut(s) 713, 941, 1073, 1297, 1565
Tru1I TTAA 7 cut(s) 231, 699, 1023, 1134, 1335, 1599, 1706
Tru9I TTAA 7 cut(s) 231, 699, 1023, 1134, 1335, 1599, 1706
TscAI CASTG 4 cut(s) 84, 115, 291, 843
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 7 cut(s) 74, 102, 105, 379, 464, 1207, 1482
Tsp45I GTSAC 1 cut(s) 175
TspGWI ACGGA 2 cut(s) 1122, 1627
TspRI CASTG 4 cut(s) 84, 115, 291, 843
Van91I CCANNNNNTGG 1 cut(s) 838
Vha464I CTTAAG 1 cut(s) 1598
VpaK11BI GGWCC 3 cut(s) 408, 725, 1004
VspI ATTAAT 1 cut(s) 1023
XagI CCTNNNNNAGG 1 cut(s) 1683
XapI RAATTY 2 cut(s) 701, 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 1163
XspI CTAG 8 cut(s) 41, 290, 354, 531, 777, 816, 945, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.