Prupe.8G228700_v2.0.a1
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
20469416 .. 20471779
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G228700.4

Sequence Viewer

Length: 1500 bp
ATGGGAGAGAAATTTTGGGTGAATGAAGAAGACAGGGTCATGGTGGAGTCAGTACTAGGTACTGAAGCATGCCAGTTCTTGACCTCTCTGGTTTCTGAAAATGTGTTGACAGACTTGGTTAGGCCGCCTGGTAAATTGGGTGTGCAGCAGGGGATGTCCCAGCTCGTCAAAGGATCCAATTGGAATTATGCCATTTTCTGGCAGGTTGTCGGCTCGAAATCTGGTGGATCTGCCTTGATTTGGGGTGATGGACACTGCAGAGACACAAAGGATGGCGGAGTTGCAGGCGAGAATTCTAGTTTGGATGGCAGTTTTGTGGGAGTGCAGAAGAAAGAGGAGGTGAAAAAGTGGGTGCTTGAGAAGCTCCATACATGTTTTGGTGGTTTGGATGAGGGTTATGCTAGGAGGTTGGATGGGGTGTCAGATGTGGAAATGTTTTACCTCACTTCAATGTATTATGCATTTCAACTTGATTCACACAGTGGTCCTGGGGAGTCGTACAAGTCCGGTAAATCAATTTGGGTTTCAGATGTGGGTGGTTGTTTACACCATTACCAGTCAAGATCATATTTAGCAAGATTGGCCGGGTTCCAAACAGTGGTGTTTGTACCTATGAAATCAGGAGTTGTTGAGCTTGGTTCAGTCAAAGCAAATCCAGAAGAACAGAATCTAGTAAATATGGTCAGAAATTTATTTGGTGAATCTAGTTCTGTTCAGGCAAAGGCATTTCCAATGATTTTTGGACGCGAGCTCAGTCTTGGTGGCCCAAAATCACAATCAATCAATATTGCCTTTTCCCCGAAGATAGAGGAAGATTCTACATTTCCTCCAGAGTCATTTGAATTACAATCAGTAGGTACTTCAAATGGATGTCAAAGTGAGGATAGTGAAGTAAAACTTTTTCCGCAATTGAACCAAATGATGGTTGGGGGTTTCAGTGCTCCTACAATAGTTTCAAGTTTGGAGCTGCCTAAGGATGAGTCCTCAGCACAAATTGATGAGCGGAAACCCAGAAAGAGAGGGAGAAAGCCTGCCAATGGGAGAGAAGAACCATTGAATCATGTGGAAGCAGAGCGGCAGAGGCGCGAGAAGCTTAACCAGAGGTTCTATGCACTAAGAGCTGTTGTTCCTAACATTTCGAAGATGGACAAAGCCTCTCTTCTTGGTGATGCCATTACTTATATCACTGATCTCCAGATGAAGATCAGGGTCATGGAAACTGAAAACCAGATGGGAAACAATAATCAAAAGCAGTTTCCGGTTCCAGAGATTGATTTTCAGGAACGACATGAGGATGCAGTTGTGAGGATGAACTGCCCATTGGATTCTCACCCAGTTTCTGAAGTCATCAAAACTCTTAGGGAACACAAAATTGTGGCTCAAGAGTCTAATGTTTCAATAACAGACAACGATAAGGTTATTCATACATTCTCCATTCCAACTCAAGGTGGTGATGCCGAGCAGTTAAAGGAGAAGCTGGTGGTCTCTCTTTCAAAATGA

Protein Analysis

500

Amino Acids

55.37

Weight (kDa)

5.64

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB7I CCANNNNNTGG 3 cut(s) 198, 598, 922
AccBSI CCGCTC 2 cut(s) 1003, 1075
AccII CGCG 2 cut(s) 747, 1086
AciI CCGC 5 cut(s) 125, 276, 905, 1003, 1075
AclWI GGATC 3 cut(s) 168, 181, 235
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 3 cut(s) 11, 292, 688
AcuI CTGAAG 2 cut(s) 84, 1362
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 5 cut(s) 54, 61, 500, 609, 859
AfiI CCNNNNNNNGG 6 cut(s) 198, 240, 598, 922, 1037, 1445
AflIII ACRYGT 1 cut(s) 371
AgsI TTSAA 9 cut(s) 450, 467, 842, 864, 913, 957, 1057, 1398, 1494
AjnI CCWGG 2 cut(s) 127, 487
AjuI GAANNNNNNNTTGG 4 cut(s) 284, 316, 1304, 1336
AluBI AGCT 8 cut(s) 163, 364, 634, 751, 967, 1093, 1121, 1477
AluI AGCT 8 cut(s) 163, 364, 634, 751, 967, 1093, 1121, 1477
Alw21I GWGCWC 2 cut(s) 753, 943
Alw26I GTCTC 2 cut(s) 255, 1489
AlwI GGATC 3 cut(s) 168, 181, 235
AlwNI CAGNNNCTG 1 cut(s) 1340
AoxI GGCC 3 cut(s) 122, 582, 763
ApeKI GCWGC 2 cut(s) 145, 967
ApoI RAATTY 3 cut(s) 11, 292, 688
AspLEI GCGC 1 cut(s) 1086
AspS9I GGNCC 2 cut(s) 485, 764
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 7 cut(s) 31, 257, 352, 710, 1178, 1322, 1463
AsuII TTCGAA 1 cut(s) 1139
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 972
BamHI GGATCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 753, 943
BbvCI CCTCAGC 1 cut(s) 985
BbvI GCAGC 2 cut(s) 157, 954
BccI CCATC 7 cut(s) 242, 266, 299, 407, 916, 1138, 1225
BciT130I CCWGG 2 cut(s) 129, 489
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 2 cut(s) 255, 1489
BfaI CTAG 5 cut(s) 56, 297, 402, 671, 705
BfmI CTRYAG 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 4 cut(s) 125, 146, 968, 1076
BlsI GCNGC 4 cut(s) 126, 147, 969, 1077
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 3 cut(s) 129, 489, 586
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 485, 764
BmiI GGNNCC 3 cut(s) 175, 590, 1263
BmrFI CCNGG 3 cut(s) 129, 489, 586
BmrI ACTGGG 1 cut(s) 1328
BmsI GCATC 3 cut(s) 1159, 1285, 1444
BmuI ACTGGG 1 cut(s) 1328
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 813, 1178
Bpu10I CCTNAGC 1 cut(s) 985
Bpu14I TTCGAA 1 cut(s) 1139
BpuEI CTTGAG 3 cut(s) 377, 1365, 1428
BpuMI CCSGG 1 cut(s) 586
BsaBI GATNNNNATC 1 cut(s) 1202
BsaI GGTCTC 1 cut(s) 1489
BsaJI CCNNGG 1 cut(s) 488
BsaWI WCCGGW 2 cut(s) 506, 1258
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 240, 598, 922, 1037, 1445
Bse1I ACTGG 3 cut(s) 73, 556, 1334
Bse21I CCTNAGG 1 cut(s) 972
Bse8I GATNNNNATC 1 cut(s) 1202
BseBI CCWGG 2 cut(s) 129, 489
BseDI CCNNGG 1 cut(s) 488
BseGI GGATG 9 cut(s) 159, 277, 310, 394, 418, 875, 982, 1300, 1314
BseJI GATNNNNATC 1 cut(s) 1202
BseLI CCNNNNNNNGG 6 cut(s) 198, 240, 598, 922, 1037, 1445
BseMII CTCAG 2 cut(s) 766, 999
BseNI ACTGG 3 cut(s) 73, 556, 1334
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 157, 954
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 2 cut(s) 164, 344
Bsh1236I CGCG 2 cut(s) 747, 1086
BshFI GGCC 3 cut(s) 124, 584, 765
BsiHKAI GWGCWC 2 cut(s) 753, 943
BsiSI CCGG 3 cut(s) 507, 585, 1259
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 6 cut(s) 198, 240, 598, 922, 1037, 1445
BsmAI GTCTC 2 cut(s) 255, 1489
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 3 cut(s) 124, 584, 765
Bso31I GGTCTC 1 cut(s) 1489
Bsp119I TTCGAA 1 cut(s) 1139
Bsp1286I GDGCHC 2 cut(s) 753, 943
Bsp143I GATC 5 cut(s) 173, 227, 563, 1189, 1203
BspACI CCGC 5 cut(s) 125, 276, 905, 1003, 1075
BspANI GGCC 3 cut(s) 124, 584, 765
BspCNI CTCAG 2 cut(s) 765, 998
BspFNI CGCG 2 cut(s) 747, 1086
BspLI GGNNCC 3 cut(s) 175, 590, 1263
BspMAI CTGCAG 1 cut(s) 260
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 3 cut(s) 168, 181, 235
BspT104I TTCGAA 1 cut(s) 1139
BspTNI GGTCTC 1 cut(s) 1489
BsrBI CCGCTC 2 cut(s) 1003, 1075
BsrI ACTGG 3 cut(s) 73, 556, 1334
BssECI CCNNGG 1 cut(s) 488
BssMI GATC 5 cut(s) 173, 227, 563, 1189, 1203
Bst2UI CCWGG 2 cut(s) 129, 489
Bst4CI ACNGT 2 cut(s) 482, 598
Bst6I CTCTTC 1 cut(s) 1164
BstBI TTCGAA 1 cut(s) 1139
BstC8I GCNNGC 4 cut(s) 70, 286, 749, 1032
BstDEI CTNAG 5 cut(s) 752, 972, 985, 1115, 1358
BstF5I GGATG 9 cut(s) 159, 277, 310, 394, 418, 875, 982, 1300, 1314
BstFNI CGCG 2 cut(s) 747, 1086
BstHHI GCGC 1 cut(s) 1086
BstKTI GATC 5 cut(s) 176, 230, 566, 1192, 1206
BstMAI GTCTC 2 cut(s) 255, 1489
BstMBI GATC 5 cut(s) 173, 227, 563, 1189, 1203
BstMWI GCNNNNNNNGC 5 cut(s) 361, 581, 1081, 1090, 1118
BstNI CCWGG 2 cut(s) 129, 489
BstNSI RCATGY 2 cut(s) 72, 375
BstSCI CCNGG 3 cut(s) 127, 487, 584
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 2 cut(s) 747, 1086
BstV1I GCAGC 2 cut(s) 157, 954
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 2 cut(s) 173, 227
BstYI RGATCY 2 cut(s) 173, 227
Bsu36I CCTNAGG 1 cut(s) 972
BsuRI GGCC 3 cut(s) 124, 584, 765
BtsCI GGATG 9 cut(s) 159, 277, 310, 394, 418, 875, 982, 1300, 1314
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 5 cut(s) 253, 487, 603, 943, 1185
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 4 cut(s) 70, 286, 749, 1032
CaiI CAGNNNCTG 1 cut(s) 1340
CfoI GCGC 1 cut(s) 1086
Cfr13I GGNCC 2 cut(s) 485, 764
CseI GACGC 1 cut(s) 753
Csp6I GTAC 5 cut(s) 53, 60, 499, 608, 858
CviAII CATG 6 cut(s) 40, 69, 372, 1061, 1213, 1289
CviQI GTAC 5 cut(s) 53, 60, 499, 608, 858
DdeI CTNAG 5 cut(s) 752, 972, 985, 1115, 1358
DpnI GATC 5 cut(s) 175, 229, 565, 1191, 1205
DpnII GATC 5 cut(s) 173, 227, 563, 1189, 1203
DraIII CACNNNGTG 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 1164
EarI CTCTTC 1 cut(s) 1164
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 751
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 1489
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 751
Eco57I CTGAAG 2 cut(s) 84, 1362
Eco81I CCTNAGG 1 cut(s) 972
EcoICRI GAGCTC 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 127, 487
EcoT22I ATGCAT 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 6 cut(s) 43, 72, 375, 1064, 1216, 1292
FalI AAGNNNNNCTT 4 cut(s) 882, 914, 1143, 1175
FaqI GGGAC 1 cut(s) 142
FatI CATG 6 cut(s) 39, 68, 371, 1060, 1212, 1288
Fnu4HI GCNGC 4 cut(s) 125, 146, 968, 1076
FokI GGATG 9 cut(s) 166, 284, 317, 401, 425, 882, 989, 1307, 1321
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 4 cut(s) 125, 146, 968, 1076
FspBI CTAG 5 cut(s) 56, 297, 402, 671, 705
GlaI GCGC 1 cut(s) 1085
GluI GCNGC 4 cut(s) 125, 146, 968, 1076
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 2 cut(s) 813, 1178
HaeIII GGCC 3 cut(s) 124, 584, 765
HapII CCGG 3 cut(s) 507, 585, 1259
HgaI GACGC 1 cut(s) 753
HhaI GCGC 1 cut(s) 1086
Hin1II CATG 6 cut(s) 43, 72, 375, 1064, 1216, 1292
Hin6I GCGC 1 cut(s) 1084
HinP1I GCGC 1 cut(s) 1084
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 1091
HpaII CCGG 3 cut(s) 507, 585, 1259
HphI GGTGA 7 cut(s) 31, 257, 352, 710, 1178, 1322, 1463
Hpy166II GTNNAC 2 cut(s) 108, 545
Hpy188I TCNGA 5 cut(s) 97, 424, 529, 686, 1342
Hpy188III TCNNGA 9 cut(s) 79, 561, 621, 656, 830, 1195, 1265, 1280, 1382
Hpy8I GTNNAC 2 cut(s) 108, 545
HpyCH4III ACNGT 2 cut(s) 482, 598
HpyCH4V TGCA 7 cut(s) 145, 258, 284, 325, 461, 1112, 1298
HpyF10VI GCNNNNNNNGC 5 cut(s) 361, 581, 1081, 1090, 1118
HpyF3I CTNAG 5 cut(s) 752, 972, 985, 1115, 1358
Hsp92II CATG 6 cut(s) 43, 72, 375, 1064, 1216, 1292
HspAI GCGC 1 cut(s) 1084
Kzo9I GATC 5 cut(s) 173, 227, 563, 1189, 1203
LmnI GCTCC 3 cut(s) 369, 946, 964
Lsp1109I GCAGC 2 cut(s) 157, 954
LweI GCATC 3 cut(s) 1159, 1285, 1444
MaeI CTAG 5 cut(s) 56, 297, 402, 671, 705
MalI GATC 5 cut(s) 175, 229, 565, 1191, 1205
MbiI CCGCTC 2 cut(s) 1003, 1075
MboI GATC 5 cut(s) 173, 227, 563, 1189, 1203
MfeI CAATTG 2 cut(s) 178, 908
MflI RGATCY 2 cut(s) 173, 227
MhlI GDGCHC 2 cut(s) 753, 943
MlyI GAGTC 5 cut(s) 56, 503, 842, 989, 1394
MmeI TCCRAC 2 cut(s) 390, 1463
Mph1103I ATGCAT 1 cut(s) 463
MseI TTAA 2 cut(s) 1095, 1466
MslI CAYNNNNRTG 2 cut(s) 449, 1293
MspI CCGG 3 cut(s) 507, 585, 1259
MspR9I CCNGG 3 cut(s) 129, 489, 586
MunI CAATTG 2 cut(s) 178, 908
MvaI CCWGG 2 cut(s) 129, 489
MvnI CGCG 2 cut(s) 747, 1086
MwoI GCNNNNNNNGC 5 cut(s) 361, 581, 1081, 1090, 1118
NciI CCSGG 1 cut(s) 586
NdeII GATC 5 cut(s) 173, 227, 563, 1189, 1203
NlaIII CATG 6 cut(s) 43, 72, 375, 1064, 1216, 1292
NlaIV GGNNCC 3 cut(s) 175, 590, 1263
NmeAIII GCCGAG 1 cut(s) 1483
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 2 cut(s) 72, 375
NspV TTCGAA 1 cut(s) 1139
PaeI GCATGC 1 cut(s) 72
PciI ACATGT 1 cut(s) 371
PfeI GAWTC 6 cut(s) 473, 667, 701, 815, 1057, 1325
PflFI GACNNNGTC 1 cut(s) 35
PflMI CCANNNNNTGG 3 cut(s) 198, 598, 922
PkrI GCNGC 4 cut(s) 126, 147, 969, 1077
PleI GAGTC 5 cut(s) 55, 502, 841, 988, 1393
PpsI GAGTC 5 cut(s) 55, 502, 841, 988, 1393
PscI ACATGT 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 753
Psp6I CCWGG 2 cut(s) 127, 487
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 2 cut(s) 127, 487
PspN4I GGNNCC 3 cut(s) 175, 590, 1263
PspPI GGNCC 2 cut(s) 485, 764
PstI CTGCAG 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 1340
PsuI RGATCY 2 cut(s) 173, 227
PsyI GACNNNGTC 1 cut(s) 35
RsaI GTAC 5 cut(s) 54, 61, 500, 609, 859
RsaNI GTAC 5 cut(s) 53, 60, 499, 608, 858
RseI CAYNNNNRTG 2 cut(s) 449, 1293
SacI GAGCTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 1095, 1466
SatI GCNGC 4 cut(s) 125, 146, 968, 1076
Sau3AI GATC 5 cut(s) 173, 227, 563, 1189, 1203
Sau96I GGNCC 2 cut(s) 485, 764
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 5 cut(s) 56, 503, 842, 989, 1394
ScrFI CCNGG 3 cut(s) 129, 489, 586
SduI GDGCHC 2 cut(s) 753, 943
SfaNI GCATC 3 cut(s) 1159, 1285, 1444
SfcI CTRYAG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 1139
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 2 cut(s) 449, 1293
SmlI CTYRAG 3 cut(s) 356, 1380, 1443
SmoI CTYRAG 3 cut(s) 356, 1380, 1443
SphI GCATGC 1 cut(s) 72
SsiI CCGC 5 cut(s) 125, 276, 905, 1003, 1075
SspI AATATT 1 cut(s) 787
SspMI CTAG 5 cut(s) 56, 297, 402, 671, 705
SstI GAGCTC 1 cut(s) 753
StyD4I CCNGG 3 cut(s) 127, 487, 584
TaaI ACNGT 2 cut(s) 482, 598
TaqI TCGA 2 cut(s) 215, 1139
TatI WGTACW 1 cut(s) 52
TauI GCSGC 2 cut(s) 127, 1078
TfiI GAWTC 6 cut(s) 473, 667, 701, 815, 1057, 1325
Tru1I TTAA 2 cut(s) 1095, 1466
Tru9I TTAA 2 cut(s) 1095, 1466
TscAI CASTG 5 cut(s) 260, 487, 603, 943, 1192
TseI GCWGC 2 cut(s) 145, 967
TspDTI ATGAA 5 cut(s) 39, 629, 1214, 1325, 1412
TspRI CASTG 5 cut(s) 260, 487, 603, 943, 1192
Tth111I GACNNNGTC 1 cut(s) 35
Van91I CCANNNNNTGG 3 cut(s) 198, 598, 922
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 3 cut(s) 11, 292, 688
XceI RCATGY 2 cut(s) 72, 375
XcmI CCANNNNNNNNNTGG 2 cut(s) 374, 923
XspI CTAG 5 cut(s) 56, 297, 402, 671, 705
ZrmI AGTACT 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.