FvH4_2g22150
BHLH Family

Transcription factor bHLH3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
18225294 .. 18228876
3583 bp
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UTR
Exon/CDS
Intron
FvH4_2g22150.t1

Sequence Viewer

Length: 1515 bp
ATGGGTGAGAAGCTTTGGGTGAATGAAGAAGAAAAGGCCGTAGTGGAGTCAGTACTGGGTACAGAAGCATGCCAGTTGTTGATCTCATTGGCTTCGGAGAACTTGTTGTCCGACTTGGCTAGGCCTCCAGGACAATTGGGTGTGCAGCAGGGGCTGTCCCAGCTTGTCCAAGGGTCCAGTTGGAATTATGCTGTCTTCTGGCAGGTTGTTGGATTGAAATCTGGTGGAGCCGCCTTGATTTGGGGCGATGGACATTGTAAAGATACCAAGGGTGGTGGAGTTGGAGACGAGAGCTCTACTAGGGATGGCAACTTGGAGGGAGTGCAGAAGAAGAATGAAGAGGTGAGGAAGTGGGTGCTTGGGAAGCTCCACTCATGTTTCGGTGGTTCGGGTGAGGATAACTATGCAAGGAGGTTGGATAGGTTGTCTGATGTGGAAATGTTTTACCTGACTTCAATGTACTTTAAATTTCAACTTGATTCACCGTATGGTCCTGGGGAGTCGTACAAGTCTGGTAAATCAATTTGGGTTTCGAACGTTGCTAGTTGCTTACATCATTACCAGTCGAGATCGTTTTTAGCTAGATTGGCAGGGTTCCAAACAGTTGTGTTTGTACCCATGAAATCAGGAGTTGTGGAGCTTGGTTCAGTCAAATCAATTCTGGAAGAACAGAATGTTGTGGATATGGTCAGAAGTGTATTTGGGGTTCCTAGCTCTGTCCAGGCAAAGATATATCCAAAGATTTTCGGGCATGAGCTTAGTCTCGGTGGTCCAAAACCACAACCGATAAACATTGCCTTCTGCCCAAAGGTTGAAACAGACTCTTCATTTCCTTCAGAATCTTTTGACTTACAAGCAATAGGCACTTCAAATGGATGTCGCACTGAGGATAGTGAAGTTAAACTGTTTCCACACTTGAGCCAAATTATGGGTGGGAATTTCAGTTCTACAGCTGGTGTTTCAAGTTCAGAGCTGCCTAAAGACGAGTCATCAGCACAAATTGATGAAAGGAAACCTAGAAAGAGAGGGAGAAAGCCTGCCAATGGAAGAGAAGAACCCTTGAATCATGTGGAAGCAGAGCGGCAGAGGCGTGAGAAGCTTAACCAGCGGTTCTACGCACTTAGAGCTGTTGTTCCCAACATATCAAAGATGGATAAAGCCTCTCTCCTTGGTGATGCCATTACCTATATCAATGATCTACAGACGAAGATCAGGGTCATGGAAACTGAGAAGCAGATGGGAAGCAGCAGCCACATGCAGTTCCCGATTCCAGAGATTGATTTCCAGGAACGACAAGAGGATGCTGTTGTGACGATGAACTGCCCACTGGGTTCTCACCCTGTTTCTGATGTCATCAGAACACTTAGGGAACATAGCATTGTAGCTCAAGATACTAATGTGTCCGTAACAGAGGATGACACTGTTATTCATACATTCTCCATTCCAACCCAAGGTGGTGATGCCGAGCAGTTAAAGGAGAAGCTGGTGGCTGCTCTTTCAAAATCATCCGTGTAA

Protein Analysis

505

Amino Acids

55.38

Weight (kDa)

5.77

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 49 - 234 2.7e-47 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 355 - 401 2.5e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 928
AccBSI CCGCTC 1 cut(s) 1081
AciI CCGC 3 cut(s) 231, 1081, 1108
AclI AACGTT 1 cut(s) 537
AcsI RAATTY 2 cut(s) 467, 937
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 5 cut(s) 54, 61, 461, 506, 615
AfiI CCNNNNNNNGG 4 cut(s) 240, 928, 1043, 1451
AgsI TTSAA 8 cut(s) 217, 456, 473, 815, 870, 963, 1063, 1500
AjnI CCWGG 4 cut(s) 127, 493, 720, 1284
AloI GAACNNNNNNTCC 4 cut(s) 92, 124, 928, 960
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 279, 767
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 2 cut(s) 36, 122
ApeKI GCWGC 5 cut(s) 145, 973, 1245, 1248, 1490
ApoI RAATTY 2 cut(s) 467, 937
AspS9I GGNCC 3 cut(s) 174, 491, 770
AsuHPI GGTGA 8 cut(s) 17, 31, 355, 404, 474, 1184, 1328, 1469
AsuII TTCGAA 1 cut(s) 533
AvaII GGWCC 3 cut(s) 174, 491, 770
BaeI ACNNNNGTAYC 2 cut(s) 1383, 1416
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 5 cut(s) 157, 960, 1257, 1260, 1477
BccI CCATC 4 cut(s) 242, 299, 1144, 1231
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 4 cut(s) 129, 495, 722, 1286
BcoDI GTCTC 2 cut(s) 279, 767
BfaI CTAG 6 cut(s) 120, 300, 543, 582, 711, 1017
BfmI CTRYAG 2 cut(s) 948, 1199
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 7 cut(s) 146, 231, 974, 1082, 1246, 1249, 1491
BlsI GCNGC 7 cut(s) 147, 232, 975, 1083, 1247, 1250, 1492
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 4 cut(s) 129, 495, 722, 1286
Bme18I GGWCC 3 cut(s) 174, 491, 770
BmgT120I GGNCC 3 cut(s) 174, 491, 770
BmiI GGNNCC 4 cut(s) 175, 229, 596, 708
BmrFI CCNGG 4 cut(s) 129, 495, 722, 1286
BmrI ACTGGG 2 cut(s) 65, 1337
BmsI GCATC 3 cut(s) 1165, 1291, 1450
BmuI ACTGGG 2 cut(s) 65, 1337
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 937, 1371
BsaBI GATNNNNATC 1 cut(s) 217
BsaJI CCNNGG 5 cut(s) 169, 267, 494, 1168, 1450
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 928, 1043, 1451
Bse1I ACTGG 5 cut(s) 60, 73, 177, 562, 1332
Bse3DI GCAATG 1 cut(s) 792
Bse8I GATNNNNATC 1 cut(s) 217
BseBI CCWGG 4 cut(s) 129, 495, 722, 1286
BseDI CCNNGG 5 cut(s) 169, 267, 494, 1168, 1450
BseGI GGATG 5 cut(s) 310, 881, 1306, 1420, 1505
BseJI GATNNNNATC 1 cut(s) 217
BseLI CCNNNNNNNGG 4 cut(s) 240, 928, 1043, 1451
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 2 cut(s) 876, 1218
BseNI ACTGG 5 cut(s) 60, 73, 177, 562, 1332
BseXI GCAGC 5 cut(s) 157, 960, 1257, 1260, 1477
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 2 cut(s) 164, 344
BshFI GGCC 2 cut(s) 38, 124
BsiHKAI GWGCWC 1 cut(s) 296
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 4 cut(s) 240, 928, 1043, 1451
BsmAI GTCTC 2 cut(s) 279, 767
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 2 cut(s) 38, 124
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 4 cut(s) 81, 569, 1195, 1209
BspACI CCGC 3 cut(s) 231, 1081, 1108
BspANI GGCC 2 cut(s) 38, 124
BspCNI CTCAG 2 cut(s) 877, 1219
BspLI GGNNCC 4 cut(s) 175, 229, 596, 708
BspMI ACCTGC 1 cut(s) 193
BspT104I TTCGAA 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 1081
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 5 cut(s) 60, 73, 177, 562, 1332
BssECI CCNNGG 5 cut(s) 169, 267, 494, 1168, 1450
BssMI GATC 4 cut(s) 81, 569, 1195, 1209
BssT1I CCWWGG 4 cut(s) 169, 267, 1168, 1450
Bst2UI CCWGG 4 cut(s) 129, 495, 722, 1286
Bst4CI ACNGT 4 cut(s) 486, 604, 906, 1423
Bst6I CTCTTC 3 cut(s) 333, 829, 1042
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 70, 1038
BstDEI CTNAG 5 cut(s) 758, 885, 1121, 1227, 1364
BstF5I GGATG 5 cut(s) 310, 881, 1306, 1420, 1505
BstKTI GATC 4 cut(s) 84, 572, 1198, 1212
BstMAI GTCTC 2 cut(s) 279, 767
BstMBI GATC 4 cut(s) 81, 569, 1195, 1209
BstMWI GCNNNNNNNGC 8 cut(s) 151, 160, 364, 587, 1087, 1096, 1105, 1124
BstNI CCWGG 4 cut(s) 129, 495, 722, 1286
BstNSI RCATGY 2 cut(s) 72, 1258
BstSCI CCNGG 4 cut(s) 127, 493, 720, 1284
BstSFI CTRYAG 2 cut(s) 948, 1199
BstV1I GCAGC 5 cut(s) 157, 960, 1257, 1260, 1477
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 38, 124
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 5 cut(s) 310, 881, 1306, 1420, 1505
BtsIMutI CAGTG 3 cut(s) 882, 1325, 1419
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 70, 1038
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 174, 491, 770
Csp6I GTAC 5 cut(s) 53, 60, 460, 505, 614
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 7 cut(s) 69, 375, 619, 752, 1067, 1219, 1255
CviQI GTAC 5 cut(s) 53, 60, 460, 505, 614
DdeI CTNAG 5 cut(s) 758, 885, 1121, 1227, 1364
DpnI GATC 4 cut(s) 83, 571, 1197, 1211
DpnII GATC 4 cut(s) 81, 569, 1195, 1209
DraI TTTAAA 1 cut(s) 466
Eam1104I CTCTTC 3 cut(s) 333, 829, 1042
EarI CTCTTC 3 cut(s) 333, 829, 1042
Ecl136II GAGCTC 1 cut(s) 294
Eco130I CCWWGG 4 cut(s) 169, 267, 1168, 1450
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 3 cut(s) 174, 491, 770
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 819
EcoICRI GAGCTC 1 cut(s) 294
EcoRII CCWGG 4 cut(s) 127, 493, 720, 1284
EcoT14I CCWWGG 4 cut(s) 169, 267, 1168, 1450
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 4 cut(s) 169, 267, 1168, 1450
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 7 cut(s) 72, 378, 622, 755, 1070, 1222, 1258
FaqI GGGAC 1 cut(s) 142
FatI CATG 7 cut(s) 68, 374, 618, 751, 1066, 1218, 1254
Fnu4HI GCNGC 7 cut(s) 146, 231, 974, 1082, 1246, 1249, 1491
FokI GGATG 5 cut(s) 317, 888, 1313, 1427, 1492
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 7 cut(s) 146, 231, 974, 1082, 1246, 1249, 1491
FspBI CTAG 6 cut(s) 120, 300, 543, 582, 711, 1017
GluI GCNGC 7 cut(s) 146, 231, 974, 1082, 1246, 1249, 1491
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 38, 124
Hin1II CATG 7 cut(s) 72, 378, 622, 755, 1070, 1222, 1258
HindIII AAGCTT 2 cut(s) 11, 1097
HinfI GANTC 8 cut(s) 47, 479, 500, 821, 839, 986, 1063, 1267
HphI GGTGA 8 cut(s) 17, 31, 355, 404, 474, 1184, 1328, 1469
Hpy188I TCNGA 8 cut(s) 97, 112, 430, 692, 838, 970, 1348, 1358
Hpy188III TCNNGA 6 cut(s) 567, 627, 662, 1264, 1271, 1388
HpyAV CCTTC 2 cut(s) 808, 843
HpyCH4III ACNGT 4 cut(s) 486, 604, 906, 1423
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 4 cut(s) 145, 325, 407, 1258
HpyF10VI GCNNNNNNNGC 8 cut(s) 151, 160, 364, 587, 1087, 1096, 1105, 1124
HpyF3I CTNAG 5 cut(s) 758, 885, 1121, 1227, 1364
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 7 cut(s) 72, 378, 622, 755, 1070, 1222, 1258
Kzo9I GATC 4 cut(s) 81, 569, 1195, 1209
LmnI GCTCC 3 cut(s) 227, 372, 637
Lsp1109I GCAGC 5 cut(s) 157, 960, 1257, 1260, 1477
LweI GCATC 3 cut(s) 1165, 1291, 1450
MaeI CTAG 6 cut(s) 120, 300, 543, 582, 711, 1017
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 1309, 1405
MalI GATC 4 cut(s) 83, 571, 1197, 1211
MbiI CCGCTC 1 cut(s) 1081
MboI GATC 4 cut(s) 81, 569, 1195, 1209
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 8 cut(s) 134, 184, 467, 522, 657, 924, 937, 999
MlyI GAGTC 4 cut(s) 56, 509, 815, 995
MmeI TCCRAC 6 cut(s) 135, 161, 190, 262, 396, 1469
MseI TTAA 4 cut(s) 465, 900, 1101, 1472
MspA1I CMGCKG 2 cut(s) 953, 1108
MspR9I CCNGG 4 cut(s) 129, 495, 722, 1286
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 4 cut(s) 129, 495, 722, 1286
MwoI GCNNNNNNNGC 8 cut(s) 151, 160, 364, 587, 1087, 1096, 1105, 1124
NdeII GATC 4 cut(s) 81, 569, 1195, 1209
NlaIII CATG 7 cut(s) 72, 378, 622, 755, 1070, 1222, 1258
NlaIV GGNNCC 4 cut(s) 175, 229, 596, 708
NmeAIII GCCGAG 1 cut(s) 1489
NmuCI GTSAC 1 cut(s) 1309
NspI RCATGY 2 cut(s) 72, 1258
NspV TTCGAA 1 cut(s) 533
PaeI GCATGC 1 cut(s) 72
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 4 cut(s) 479, 839, 1063, 1267
PflMI CCANNNNNTGG 1 cut(s) 928
PfoI TCCNGGA 2 cut(s) 127, 1284
PkrI GCNGC 7 cut(s) 147, 232, 975, 1083, 1247, 1250, 1492
PleI GAGTC 4 cut(s) 55, 508, 815, 994
PpsI GAGTC 4 cut(s) 55, 508, 815, 994
Psp124BI GAGCTC 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 537
Psp6I CCWGG 4 cut(s) 127, 493, 720, 1284
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 4 cut(s) 127, 493, 720, 1284
PspN4I GGNNCC 4 cut(s) 175, 229, 596, 708
PspPI GGNCC 3 cut(s) 174, 491, 770
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 5 cut(s) 54, 61, 461, 506, 615
RsaNI GTAC 5 cut(s) 53, 60, 460, 505, 614
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 4 cut(s) 465, 900, 1101, 1472
SatI GCNGC 7 cut(s) 146, 231, 974, 1082, 1246, 1249, 1491
Sau3AI GATC 4 cut(s) 81, 569, 1195, 1209
Sau96I GGNCC 3 cut(s) 174, 491, 770
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 4 cut(s) 56, 509, 815, 995
ScrFI CCNGG 4 cut(s) 129, 495, 722, 1286
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 3 cut(s) 1165, 1291, 1450
SfcI CTRYAG 2 cut(s) 948, 1199
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 3 cut(s) 174, 491, 770
SmlI CTYRAG 2 cut(s) 916, 1386
SmoI CTYRAG 2 cut(s) 916, 1386
SphI GCATGC 1 cut(s) 72
Sse9I AATT 8 cut(s) 134, 184, 467, 522, 657, 924, 937, 999
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 231, 1081, 1108
SspMI CTAG 6 cut(s) 120, 300, 543, 582, 711, 1017
SstI GAGCTC 1 cut(s) 296
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 4 cut(s) 127, 493, 720, 1284
StyI CCWWGG 4 cut(s) 169, 267, 1168, 1450
TaaI ACNGT 4 cut(s) 486, 604, 906, 1423
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 533, 566
TasI AATT 8 cut(s) 134, 184, 467, 522, 657, 924, 937, 999
TatI WGTACW 2 cut(s) 52, 459
TauI GCSGC 2 cut(s) 233, 1084
TfiI GAWTC 4 cut(s) 479, 839, 1063, 1267
Tru1I TTAA 4 cut(s) 465, 900, 1101, 1472
Tru9I TTAA 4 cut(s) 465, 900, 1101, 1472
TscAI CASTG 3 cut(s) 889, 1332, 1426
TseFI GTSAC 1 cut(s) 1309
TseI GCWGC 5 cut(s) 145, 973, 1245, 1248, 1490
Tsp45I GTSAC 1 cut(s) 1309
TspDTI ATGAA 7 cut(s) 39, 351, 635, 816, 1020, 1331, 1418
TspGWI ACGGA 2 cut(s) 1393, 1498
TspRI CASTG 3 cut(s) 889, 1332, 1426
Van91I CCANNNNNTGG 1 cut(s) 928
VpaK11BI GGWCC 3 cut(s) 174, 491, 770
XapI RAATTY 2 cut(s) 467, 937
XceI RCATGY 2 cut(s) 72, 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 929
XspI CTAG 6 cut(s) 120, 300, 543, 582, 711, 1017
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.