Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008028

Physical Location & Seq

Genomic Coordinates Reverse (-)

9293543 .. 9296089

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGTATCGGTGGAGGAACCTTTATCTCATTCCAATTCCACTCGCTTTCCGTTAACAACCGATTTCTACGGTTCATCATCGCCGTCGGCGGCGAGGTTACACCGTCAAGCTGGCCGGTCGATGAGAACAGTGAGATCTAACTTCTATCAAAGCGGAGATCAATCTTGCTCATTCGTCGGCTCAATCGGCGATAAATCAGAGTATGCGTCGGAGTTTCTCTCGGATTCCGTCATCGACATGAGACTCGGCGAGCTTGCTTTGAAAAACAGTAATTCTCTCAATTCAAACGCTTCCTCAATGAAAGAGGAAGCGTTTCTCGACATTTCTCAGGCGTTTAGTGATTTTTCCGCTTGTAGTAGTGATATCTCCGGCGAGTTACAGCGTCTTGCTTGCTTGCCGTCGCCGGAGGCTGATAGAAATGAGAGCGGCGGAGATAACGAAGCGGAGCATGATCCAGAGTTAGAGAGAGAGCCTTGTCTAGGGTTTCTACAGAGAGAAAACTTCTCTACAGAGATTATCGAGTGTATTTCGCCGGAAGATCTGCAGCCAACTGTGAAACTATGCATCGACGGACTTCGTTCCTCTTCGGTGGCGATAAAGCGATCTGCTGCGGCGAAGCTACGGCTATTGGCGAAGAATCGAGCGGATAATCGTGTGTTGATTGGGGAATCTGGAGCTATTCAAGCTTTGATTCCACTTCTTCGTTGTAACGATCCATGGACGCAAGAGCACGCAGTTACAGCTCTGTTAAACCTCTCGTTACACGACCAGAACAAAGCTGTAATCGCCGCAGGAGGAGCGATTAAATCACTAGTGTGGGTACTCAAAACGGGGACGGAGACTTCAAAGCAGAACGCTGCATGTGCTTTGCTTAGTTTGGCGCTATTGGAGGAGAACAAAGGCTCAATCGGAGCTTGCGGTGCTATTCCGCCGCTGGTTTCTCTTCTGTTGAACGGATCTTGCAGGGGAAAGAAGGATGCGTTGACGACGCTCTACAAGCTGTGTACGCTTCAGCAAAACAAGGAGAGAGCGGTCACTGCTGGAGCGGTGAAGCCGTTGGTGGACCTTGTGGCTGAGGAAGGGACTGGTATGGCGGAGAAAGCTATGGTGGTTCTGAGTAGCCTTGCAGCGATAGATGATGGCAAAGAGGCTATTGTCGAGGAAGGAGGGATCGCAGCGCTTGTTGAGGCCATCGAGGATGGATCTGTGAAAGGGAAAGAATTTGCGATCTTGACGCTGTTGCAGCTTTGTTCTGATAGCGTTAGAAACCGTGGGTTGCTTGTGAGGGAAGGCGCGATTCCTCCGCTTGTGGGCCTCTCTCAGAGCGGCTCCGTCAGTGTTAGAGCTAAGCGCAAGGCAGAAAGACTTCTGGGGTATCTTCGGGAGCCAAGGAAGGAGGCAAGTTCATCAAGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

472

Amino Acids

50.32

Weight (kDa)

5.38

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	200 - 462	1.9e-24	Plant U-box protein ARM repeat region
Arm	PF00514	216 - 253	7.3e-07	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	248 - 445	1.2e-12	ARMC5
Arm	PF00514	298 - 335	7.2e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16490
fragaria_vesca	FvH4_3g00770
malus_domestica	MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1
prunus_persica	Prupe.4G008500_v2.0.a1
pyrus_communis	pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300
rosa_chinensis	RchiOBHm_Chr5g0001011
rosa_laevigata	RLG00000030913
rosa_multiflora	Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075270
rosa_rugosa	Rorug04G0388900
rosa_samantha	Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700
rosa_wichuraiana	Rw5G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	5 cut(s)	426, 644, 1031, 1046, 1326
AccII	CGCG	1 cut(s)	1295
AclWI	GGATC	5 cut(s)	446, 707, 964, 1178, 1210
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	1220
AcuI	CTGAAG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	822, 1006
AfeI	AGCGCT	1 cut(s)	1179
AfiI	CCNNNNNNNGG	2 cut(s)	479, 1310
AgsI	TTSAA	5 cut(s)	262, 285, 683, 846, 952
AhlI	ACTAGT	1 cut(s)	811
AleI	CACNNNNGTG	1 cut(s)	814
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	2 cut(s)	235, 833
AlwI	GGATC	5 cut(s)	446, 707, 964, 1178, 1210
Aor51HI	AGCGCT	1 cut(s)	1179
AoxI	GGCC	3 cut(s)	112, 1188, 1312
ApeKI	GCWGC	6 cut(s)	544, 608, 857, 1127, 1175, 1243
ApoI	RAATTY	1 cut(s)	1220
Asp700I	GAANNNNTTC	2 cut(s)	312, 1365
AspLEI	GCGC	4 cut(s)	883, 1180, 1295, 1353
AspS9I	GGNCC	2 cut(s)	1063, 1312
AsuHPI	GGTGA	1 cut(s)	1060
AvaII	GGWCC	1 cut(s)	1063
Bbv12I	GWGCWC	1 cut(s)	732
BbvCI	CCTCAGC	1 cut(s)	1074
BbvI	GCAGC	6 cut(s)	556, 595, 844, 1139, 1187, 1255
BccI	CCATC	3 cut(s)	1133, 1193, 1199
BceAI	ACGGC	4 cut(s)	67, 382, 638, 1039
BcoDI	GTCTC	2 cut(s)	235, 833
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	2 cut(s)	479, 812
BfmI	CTRYAG	3 cut(s)	488, 507, 542
BfoI	RGCGCY	2 cut(s)	884, 1181
BglII	AGATCT	2 cut(s)	134, 538
BlpI	GCTNAGC	1 cut(s)	1347
Bme18I	GGWCC	1 cut(s)	1063
BmgT120I	GGNCC	2 cut(s)	1063, 1312
BmiI	GGNNCC	3 cut(s)	18, 1330, 1386
BmsI	GCATC	2 cut(s)	573, 967
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	2 cut(s)	693, 1062
Bpu10I	CCTNAGC	1 cut(s)	1074
Bpu1102I	GCTNAGC	1 cut(s)	1347
BsaJI	CCNNGG	3 cut(s)	716, 1270, 1388
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 1310
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	1090
BseDI	CCNNGG	3 cut(s)	716, 1270, 1388
BseGI	GGATG	2 cut(s)	982, 1204
BseLI	CCNNNNNNNGG	2 cut(s)	479, 1310
BseMII	CTCAG	4 cut(s)	341, 1065, 1106, 1334
BseNI	ACTGG	1 cut(s)	1090
BseRI	GAGGAG	2 cut(s)	810, 905
BseXI	GCAGC	6 cut(s)	556, 595, 844, 1139, 1187, 1255
Bsh1236I	CGCG	1 cut(s)	1295
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	114, 1190, 1314
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	732
BsiSI	CCGG	4 cut(s)	115, 369, 404, 533
BslFI	GGGAC	2 cut(s)	847, 1096
BslI	CCNNNNNNNGG	2 cut(s)	479, 1310
BsmAI	GTCTC	2 cut(s)	235, 833
BsmFI	GGGAC	2 cut(s)	847, 1096
BsnI	GGCC	3 cut(s)	114, 1190, 1314
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp1720I	GCTNAGC	1 cut(s)	1347
Bsp19I	CCATGG	1 cut(s)	716
BspANI	GGCC	3 cut(s)	114, 1190, 1314
BspCNI	CTCAG	4 cut(s)	340, 1066, 1107, 1333
BspFNI	CGCG	1 cut(s)	1295
BspLI	GGNNCC	3 cut(s)	18, 1330, 1386
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	5 cut(s)	446, 707, 964, 1178, 1210
BsrBI	CCGCTC	5 cut(s)	426, 644, 1031, 1046, 1326
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	1090
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	716, 1270, 1388
BssT1I	CCWWGG	2 cut(s)	716, 1388
Bst4CI	ACNGT	6 cut(s)	71, 104, 130, 269, 553, 1271
Bst6I	CTCTTC	2 cut(s)	589, 948
BstC8I	GCNNGC	7 cut(s)	112, 251, 255, 391, 395, 732, 916
BstDEI	CTNAG	6 cut(s)	327, 872, 1074, 1115, 1320, 1347
BstDSI	CCRYGG	2 cut(s)	716, 1270
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	982, 1204
BstFNI	CGCG	1 cut(s)	1295
BstH2I	RGCGCY	2 cut(s)	884, 1181
BstHHI	GCGC	4 cut(s)	883, 1180, 1295, 1353
BstMAI	GTCTC	2 cut(s)	235, 833
BstMCI	CGRYCG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	864
BstSFI	CTRYAG	3 cut(s)	488, 507, 542
BstUI	CGCG	1 cut(s)	1295
BstV1I	GCAGC	6 cut(s)	556, 595, 844, 1139, 1187, 1255
BstX2I	RGATCY	4 cut(s)	134, 538, 956, 1202
BstYI	RGATCY	4 cut(s)	134, 538, 956, 1202
BsuRI	GGCC	3 cut(s)	114, 1190, 1314
BtgI	CCRYGG	2 cut(s)	716, 1270
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	982, 1204
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	3 cut(s)	135, 1035, 1342
Cac8I	GCNNGC	7 cut(s)	112, 251, 255, 391, 395, 732, 916
CfoI	GCGC	4 cut(s)	883, 1180, 1295, 1353
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	1063, 1312
CseI	GACGC	5 cut(s)	195, 371, 730, 997, 1243
Csp6I	GTAC	2 cut(s)	821, 1005
CviAII	CATG	5 cut(s)	238, 449, 717, 861, 1416
CviQI	GTAC	2 cut(s)	821, 1005
DdeI	CTNAG	6 cut(s)	327, 872, 1074, 1115, 1320, 1347
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	589, 948
EarI	CTCTTC	2 cut(s)	589, 948
EciI	GGCGGA	3 cut(s)	444, 918, 1109
Eco130I	CCWWGG	2 cut(s)	716, 1388
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	1063
Eco47III	AGCGCT	1 cut(s)	1179
Eco57I	CTGAAG	1 cut(s)	995
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	716, 1388
EcoT22I	ATGCAT	1 cut(s)	566
ErhI	CCWWGG	2 cut(s)	716, 1388
FaeI	CATG	5 cut(s)	241, 452, 720, 864, 1419
FaiI	YATR	9 cut(s)	204, 239, 450, 562, 718, 862, 1091, 1106, 1417
FaqI	GGGAC	2 cut(s)	847, 1096
FatI	CATG	5 cut(s)	237, 448, 716, 860, 1415
FokI	GGATG	2 cut(s)	989, 1211
FspBI	CTAG	2 cut(s)	479, 812
GlaI	GCGC	4 cut(s)	882, 1179, 1294, 1352
GsuI	CTGGAG	2 cut(s)	693, 1062
HaeII	RGCGCY	2 cut(s)	884, 1181
HaeIII	GGCC	3 cut(s)	114, 1190, 1314
HapII	CCGG	4 cut(s)	115, 369, 404, 533
HgaI	GACGC	5 cut(s)	195, 371, 730, 997, 1243
HhaI	GCGC	4 cut(s)	883, 1180, 1295, 1353
Hin1II	CATG	5 cut(s)	241, 452, 720, 864, 1419
Hin6I	GCGC	4 cut(s)	881, 1178, 1293, 1351
HinP1I	GCGC	4 cut(s)	881, 1178, 1293, 1351
HincII	GTYRAC	2 cut(s)	54, 984
HindII	GTYRAC	2 cut(s)	54, 984
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	6 cut(s)	224, 243, 637, 668, 691, 1297
HpaI	GTTAAC	1 cut(s)	54
HpaII	CCGG	4 cut(s)	115, 369, 404, 533
HphI	GGTGA	1 cut(s)	1060
Hpy166II	GTNNAC	4 cut(s)	54, 984, 1005, 1063
Hpy188I	TCNGA	7 cut(s)	199, 211, 223, 911, 1116, 1255, 1323
Hpy188III	TCNNGA	5 cut(s)	317, 455, 672, 1231, 1382
Hpy8I	GTNNAC	4 cut(s)	54, 984, 1005, 1063
Hpy99I	CGWCG	6 cut(s)	88, 179, 211, 403, 572, 991
HpyAV	CCTTC	5 cut(s)	967, 1073, 1157, 1283, 1387
HpyCH4III	ACNGT	6 cut(s)	71, 104, 130, 269, 553, 1271
HpyCH4V	TGCA	6 cut(s)	544, 564, 860, 963, 1127, 1243
HpyF3I	CTNAG	6 cut(s)	327, 872, 1074, 1115, 1320, 1347
Hsp92II	CATG	5 cut(s)	241, 452, 720, 864, 1419
HspAI	GCGC	4 cut(s)	881, 1178, 1293, 1351
KspAI	GTTAAC	1 cut(s)	54
LmnI	GCTCC	7 cut(s)	445, 674, 797, 911, 1043, 1334, 1384
Lsp1109I	GCAGC	6 cut(s)	556, 595, 844, 1139, 1187, 1255
LweI	GCATC	2 cut(s)	573, 967
MaeI	CTAG	2 cut(s)	479, 812
MaeIII	GTNAC	6 cut(s)	96, 375, 707, 736, 759, 1033
MbiI	CCGCTC	5 cut(s)	426, 644, 1031, 1046, 1326
MboII	GAAGA	6 cut(s)	548, 576, 646, 692, 935, 1370
MflI	RGATCY	4 cut(s)	134, 538, 956, 1202
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	4 cut(s)	34, 271, 280, 1220
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	566
MroXI	GAANNNNTTC	2 cut(s)	312, 1365
MseI	TTAA	3 cut(s)	53, 749, 804
MslI	CAYNNNNRTG	2 cut(s)	236, 814
MspA1I	CMGCKG	1 cut(s)	934
MspI	CCGG	4 cut(s)	115, 369, 404, 533
MvnI	CGCG	1 cut(s)	1295
NcoI	CCATGG	1 cut(s)	716
NlaIII	CATG	5 cut(s)	241, 452, 720, 864, 1419
NlaIV	GGNNCC	3 cut(s)	18, 1330, 1386
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	1033
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	864
OliI	CACNNNNGTG	1 cut(s)	814
PdmI	GAANNNNTTC	2 cut(s)	312, 1365
PfeI	GAWTC	5 cut(s)	224, 637, 668, 691, 1297
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	18, 1330, 1386
PspPI	GGNCC	2 cut(s)	1063, 1312
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	4 cut(s)	134, 538, 956, 1202
RsaI	GTAC	2 cut(s)	822, 1006
RsaNI	GTAC	2 cut(s)	821, 1005
RseI	CAYNNNNRTG	2 cut(s)	236, 814
SaqAI	TTAA	3 cut(s)	53, 749, 804
Sau96I	GGNCC	2 cut(s)	1063, 1312
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	732
SfaNI	GCATC	2 cut(s)	573, 967
SfcI	CTRYAG	3 cut(s)	488, 507, 542
SinI	GGWCC	1 cut(s)	1063
SmiMI	CAYNNNNRTG	2 cut(s)	236, 814
SpeI	ACTAGT	1 cut(s)	811
Sse9I	AATT	4 cut(s)	34, 271, 280, 1220
SspMI	CTAG	2 cut(s)	479, 812
StyI	CCWWGG	2 cut(s)	716, 1388
TaaI	ACNGT	6 cut(s)	71, 104, 130, 269, 553, 1271
TaqI	TCGA	8 cut(s)	119, 234, 318, 519, 567, 640, 1158, 1194
TasI	AATT	4 cut(s)	34, 271, 280, 1220
TauI	GCSGC	6 cut(s)	92, 429, 614, 791, 934, 1329
TfiI	GAWTC	5 cut(s)	224, 637, 668, 691, 1297
Tru1I	TTAA	3 cut(s)	53, 749, 804
Tru9I	TTAA	3 cut(s)	53, 749, 804
TscAI	CASTG	3 cut(s)	135, 1042, 1342
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	6 cut(s)	544, 608, 857, 1127, 1175, 1243
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	3 cut(s)	63, 314, 1395
TspGWI	ACGGA	6 cut(s)	39, 217, 585, 851, 969, 1321
TspRI	CASTG	3 cut(s)	135, 1042, 1342
VpaK11BI	GGWCC	1 cut(s)	1063
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	1220
XceI	RCATGY	1 cut(s)	864
XmnI	GAANNNNTTC	2 cut(s)	312, 1365
XspI	CTAG	2 cut(s)	479, 812
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.