U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G16490 |
| fragaria_vesca | FvH4_3g00770 |
| malus_domestica | MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1 |
| prunus_persica | Prupe.4G008500_v2.0.a1 |
| pyrus_communis | pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300 |
| rosa_chinensis | RchiOBHm_Chr5g0001011 |
| rosa_laevigata | RLG00000030913 |
| rosa_multiflora | Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00075270 |
| rosa_rugosa | Rorug04G0388900 |
| rosa_samantha | Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700 |
| rosa_wichuraiana | Rw5G000830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 545 |
| Acc16I | TGCGCA | 1 cut(s) | 116 |
| AccB1I | GGYRCC | 1 cut(s) | 632 |
| AccBSI | CCGCTC | 3 cut(s) | 108, 126, 644 |
| AccI | GTMKAC | 2 cut(s) | 216, 525 |
| AccII | CGCG | 4 cut(s) | 272, 389, 612, 998 |
| AclWI | GGATC | 4 cut(s) | 504, 665, 909, 922 |
| AcoI | YGGCCR | 2 cut(s) | 103, 570 |
| AcsI | RAATTY | 1 cut(s) | 458 |
| AcuI | CTGAAG | 2 cut(s) | 295, 485 |
| AcyI | GRCGYC | 2 cut(s) | 542, 633 |
| AfaI | GTAC | 4 cut(s) | 290, 776, 953, 1328 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 437, 579, 621, 787 |
| AgsI | TTSAA | 1 cut(s) | 1154 |
| AjnI | CCWGG | 1 cut(s) | 435 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1305, 1337 |
| Alw21I | GWGCWC | 3 cut(s) | 237, 690, 863 |
| Alw26I | GTCTC | 3 cut(s) | 193, 1208, 1336 |
| AlwI | GGATC | 4 cut(s) | 504, 665, 909, 922 |
| AoxI | GGCC | 4 cut(s) | 103, 529, 570, 735 |
| ApoI | RAATTY | 1 cut(s) | 458 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1317 |
| AsuHPI | GGTGA | 2 cut(s) | 736, 1003 |
| BamHI | GGATCC | 1 cut(s) | 914 |
| BanI | GGYRCC | 1 cut(s) | 632 |
| BanII | GRGCYC | 2 cut(s) | 237, 863 |
| BauI | CACGAG | 1 cut(s) | 919 |
| BbsI | GAAGAC | 1 cut(s) | 267 |
| Bbv12I | GWGCWC | 3 cut(s) | 237, 690, 863 |
| BccI | CCATC | 3 cut(s) | 128, 1057, 1151 |
| BceAI | ACGGC | 6 cut(s) | 358, 536, 544, 620, 677, 714 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 145, 179, 1051, 1085 |
| BciT130I | CCWGG | 1 cut(s) | 437 |
| BcoDI | GTCTC | 3 cut(s) | 193, 1208, 1336 |
| BfmI | CTRYAG | 2 cut(s) | 328, 564 |
| BfoI | RGCGCY | 4 cut(s) | 636, 704, 842, 1139 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 698 |
| BglII | AGATCT | 1 cut(s) | 516 |
| BlpI | GCTNAGC | 2 cut(s) | 830, 1299 |
| Bme1390I | CCNGG | 1 cut(s) | 437 |
| BmiI | GGNNCC | 6 cut(s) | 31, 423, 429, 634, 871, 916 |
| BmrFI | CCNGG | 1 cut(s) | 437 |
| BmrI | ACTGGG | 1 cut(s) | 1293 |
| BmuI | ACTGGG | 1 cut(s) | 1293 |
| BoxI | GACNNNNGTC | 1 cut(s) | 185 |
| BpiI | GAAGAC | 1 cut(s) | 267 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 446, 478 |
| BpmI | CTGGAG | 2 cut(s) | 16, 278 |
| Bpu10I | CCTNAGC | 1 cut(s) | 578 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 830, 1299 |
| BpuEI | CTTGAG | 2 cut(s) | 767, 1351 |
| BsaHI | GRCGYC | 2 cut(s) | 542, 633 |
| BsaJI | CCNNGG | 4 cut(s) | 226, 408, 436, 674 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 59, 89, 134, 164 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 437, 579, 621, 787 |
| Bse118I | RCCGGY | 1 cut(s) | 101 |
| Bse1I | ACTGG | 2 cut(s) | 1029, 1288 |
| BseBI | CCWGG | 1 cut(s) | 437 |
| BseDI | CCNNGG | 4 cut(s) | 226, 408, 436, 674 |
| BseGI | GGATG | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 437, 579, 621, 787 |
| BseMII | CTCAG | 4 cut(s) | 592, 821, 1064, 1211 |
| BseNI | ACTGG | 2 cut(s) | 1029, 1288 |
| BseRI | GAGGAG | 2 cut(s) | 67, 299 |
| BseX3I | CGGCCG | 1 cut(s) | 103 |
| BsgI | GTGCAG | 3 cut(s) | 685, 704, 1228 |
| Bsh1236I | CGCG | 4 cut(s) | 272, 389, 612, 998 |
| Bsh1285I | CGRYCG | 3 cut(s) | 106, 213, 468 |
| BshFI | GGCC | 4 cut(s) | 105, 531, 572, 737 |
| BshNI | GGYRCC | 1 cut(s) | 632 |
| BsiEI | CGRYCG | 3 cut(s) | 106, 213, 468 |
| BsiHKAI | GWGCWC | 3 cut(s) | 237, 690, 863 |
| BsiSI | CCGG | 8 cut(s) | 27, 102, 380, 419, 425, 491, 630, 753 |
| BslFI | GGGAC | 3 cut(s) | 805, 1054, 1300 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 437, 579, 621, 787 |
| BsmAI | GTCTC | 3 cut(s) | 193, 1208, 1336 |
| BsmFI | GGGAC | 3 cut(s) | 805, 1054, 1300 |
| BsnI | GGCC | 4 cut(s) | 105, 531, 572, 737 |
| Bsp1286I | GDGCHC | 3 cut(s) | 237, 690, 863 |
| Bsp1407I | TGTACA | 1 cut(s) | 951 |
| Bsp143I | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 830, 1299 |
| Bsp19I | CCATGG | 1 cut(s) | 674 |
| BspANI | GGCC | 4 cut(s) | 105, 531, 572, 737 |
| BspCNI | CTCAG | 4 cut(s) | 591, 822, 1065, 1212 |
| BspFNI | CGCG | 4 cut(s) | 272, 389, 612, 998 |
| BspLI | GGNNCC | 6 cut(s) | 31, 423, 429, 634, 871, 916 |
| BspMAI | CTGCAG | 2 cut(s) | 332, 568 |
| BspPI | GGATC | 4 cut(s) | 504, 665, 909, 922 |
| BspT107I | GGYRCC | 1 cut(s) | 632 |
| BsrBI | CCGCTC | 3 cut(s) | 108, 126, 644 |
| BsrFI | RCCGGY | 1 cut(s) | 101 |
| BsrGI | TGTACA | 1 cut(s) | 951 |
| BsrI | ACTGG | 2 cut(s) | 1029, 1288 |
| BssAI | RCCGGY | 1 cut(s) | 101 |
| BssECI | CCNNGG | 4 cut(s) | 226, 408, 436, 674 |
| BssMI | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| BssNI | GRCGYC | 2 cut(s) | 542, 633 |
| BssSI | CACGAG | 1 cut(s) | 919 |
| BssT1I | CCWWGG | 1 cut(s) | 674 |
| Bst2BI | CACGAG | 1 cut(s) | 919 |
| Bst2UI | CCWGG | 1 cut(s) | 437 |
| Bst4CI | ACNGT | 4 cut(s) | 95, 511, 1197, 1291 |
| Bst6I | CTCTTC | 2 cut(s) | 843, 1363 |
| BstACI | GRCGYC | 2 cut(s) | 542, 633 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 821 |
| BstAUI | TGTACA | 1 cut(s) | 951 |
| BstDEI | CTNAG | 5 cut(s) | 578, 830, 1073, 1220, 1299 |
| BstDSI | CCRYGG | 1 cut(s) | 674 |
| BstF5I | GGATG | 1 cut(s) | 120 |
| BstFNI | CGCG | 4 cut(s) | 272, 389, 612, 998 |
| BstH2I | RGCGCY | 4 cut(s) | 636, 704, 842, 1139 |
| BstKTI | GATC | 8 cut(s) | 148, 179, 474, 499, 519, 621, 673, 917 |
| BstMAI | GTCTC | 3 cut(s) | 193, 1208, 1336 |
| BstMBI | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| BstMCI | CGRYCG | 3 cut(s) | 106, 213, 468 |
| BstNI | CCWGG | 1 cut(s) | 437 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 185 |
| BstSCI | CCNGG | 1 cut(s) | 435 |
| BstSFI | CTRYAG | 2 cut(s) | 328, 564 |
| BstUI | CGCG | 4 cut(s) | 272, 389, 612, 998 |
| BstV2I | GAAGAC | 1 cut(s) | 267 |
| BstX2I | RGATCY | 3 cut(s) | 496, 516, 914 |
| BstYI | RGATCY | 3 cut(s) | 496, 516, 914 |
| BstZI | CGGCCG | 1 cut(s) | 103 |
| BsuRI | GGCC | 4 cut(s) | 105, 531, 572, 737 |
| BtgI | CCRYGG | 1 cut(s) | 674 |
| BtgZI | GCGATG | 1 cut(s) | 1076 |
| BtsCI | GGATG | 1 cut(s) | 120 |
| BtsI | GCAGTG | 1 cut(s) | 1216 |
| BtsIMutI | CAGTG | 4 cut(s) | 319, 1022, 1193, 1216 |
| Cfr10I | RCCGGY | 1 cut(s) | 101 |
| CseI | GACGC | 4 cut(s) | 261, 688, 944, 1341 |
| Csp6I | GTAC | 4 cut(s) | 289, 775, 952, 1327 |
| CviAII | CATG | 4 cut(s) | 112, 220, 432, 675 |
| CviQI | GTAC | 4 cut(s) | 289, 775, 952, 1327 |
| DdeI | CTNAG | 5 cut(s) | 578, 830, 1073, 1220, 1299 |
| DinI | GGCGCC | 1 cut(s) | 634 |
| DpnI | GATC | 8 cut(s) | 147, 178, 473, 498, 518, 620, 672, 916 |
| DpnII | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| EaeI | YGGCCR | 2 cut(s) | 103, 570 |
| EagI | CGGCCG | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 2 cut(s) | 843, 1363 |
| EarI | CTCTTC | 2 cut(s) | 843, 1363 |
| EciI | GGCGGA | 5 cut(s) | 247, 313, 1046, 1067, 1248 |
| Ecl136II | GAGCTC | 2 cut(s) | 235, 861 |
| EclXI | CGGCCG | 1 cut(s) | 103 |
| Eco130I | CCWWGG | 1 cut(s) | 674 |
| Eco24I | GRGCYC | 2 cut(s) | 237, 863 |
| Eco52I | CGGCCG | 1 cut(s) | 103 |
| Eco53kI | GAGCTC | 2 cut(s) | 235, 861 |
| Eco57I | CTGAAG | 2 cut(s) | 295, 485 |
| EcoICRI | GAGCTC | 2 cut(s) | 235, 861 |
| EcoRII | CCWGG | 1 cut(s) | 435 |
| EcoT14I | CCWWGG | 1 cut(s) | 674 |
| EcoT38I | GRGCYC | 2 cut(s) | 237, 863 |
| EgeI | GGCGCC | 1 cut(s) | 634 |
| EheI | GGCGCC | 1 cut(s) | 634 |
| ErhI | CCWWGG | 1 cut(s) | 674 |
| FaeI | CATG | 4 cut(s) | 115, 223, 435, 678 |
| FaiI | YATR | 7 cut(s) | 113, 221, 341, 433, 676, 740, 761 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 166, 198 |
| FaqI | GGGAC | 3 cut(s) | 805, 1054, 1300 |
| FatI | CATG | 4 cut(s) | 111, 219, 431, 674 |
| FauI | CCCGC | 8 cut(s) | 54, 65, 161, 649, 897, 991, 1078, 1118 |
| FblI | GTMKAC | 2 cut(s) | 216, 525 |
| FokI | GGATG | 1 cut(s) | 107 |
| FriOI | GRGCYC | 2 cut(s) | 237, 863 |
| FspAI | RTGCGCAY | 1 cut(s) | 116 |
| FspI | TGCGCA | 1 cut(s) | 116 |
| GsuI | CTGGAG | 2 cut(s) | 16, 278 |
| HaeII | RGCGCY | 4 cut(s) | 636, 704, 842, 1139 |
| HaeIII | GGCC | 4 cut(s) | 105, 531, 572, 737 |
| HapII | CCGG | 8 cut(s) | 27, 102, 380, 419, 425, 491, 630, 753 |
| HgaI | GACGC | 4 cut(s) | 261, 688, 944, 1341 |
| Hin1I | GRCGYC | 2 cut(s) | 542, 633 |
| Hin1II | CATG | 4 cut(s) | 115, 223, 435, 678 |
| HincII | GTYRAC | 3 cut(s) | 217, 526, 1191 |
| HindII | GTYRAC | 3 cut(s) | 217, 526, 1191 |
| HindIII | AAGCTT | 1 cut(s) | 367 |
| HinfI | GANTC | 9 cut(s) | 17, 206, 595, 626, 725, 946, 1089, 1216, 1255 |
| HpaII | CCGG | 8 cut(s) | 27, 102, 380, 419, 425, 491, 630, 753 |
| HphI | GGTGA | 2 cut(s) | 736, 1003 |
| Hpy166II | GTNNAC | 4 cut(s) | 217, 526, 775, 1191 |
| Hpy188I | TCNGA | 6 cut(s) | 193, 280, 400, 409, 869, 1221 |
| Hpy188III | TCNNGA | 4 cut(s) | 345, 463, 478, 514 |
| Hpy8I | GTNNAC | 4 cut(s) | 217, 526, 775, 1191 |
| Hpy99I | CGWCG | 7 cut(s) | 218, 284, 379, 511, 530, 544, 547 |
| HpyAV | CCTTC | 7 cut(s) | 172, 319, 1051, 1091, 1096, 1115, 1241 |
| HpyCH4III | ACNGT | 4 cut(s) | 95, 511, 1197, 1291 |
| HpyCH4IV | ACGT | 2 cut(s) | 542, 777 |
| HpyCH4V | TGCA | 9 cut(s) | 330, 355, 448, 566, 666, 721, 881, 1201, 1209 |
| HpyF3I | CTNAG | 5 cut(s) | 578, 830, 1073, 1220, 1299 |
| HpySE526I | ACGT | 2 cut(s) | 542, 777 |
| Hsp92I | GRCGYC | 2 cut(s) | 542, 633 |
| Hsp92II | CATG | 4 cut(s) | 115, 223, 435, 678 |
| KasI | GGCGCC | 1 cut(s) | 632 |
| Kzo9I | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| LmnI | GCTCC | 9 cut(s) | 35, 113, 131, 260, 427, 755, 869, 1001, 1033 |
| MaeII | ACGT | 2 cut(s) | 542, 777 |
| MaeIII | GTNAC | 1 cut(s) | 694 |
| MalI | GATC | 8 cut(s) | 147, 178, 473, 498, 518, 620, 672, 916 |
| MbiI | CCGCTC | 3 cut(s) | 108, 126, 644 |
| MboI | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| MboII | GAAGA | 6 cut(s) | 267, 491, 604, 860, 1166, 1350 |
| MflI | RGATCY | 3 cut(s) | 496, 516, 914 |
| MhlI | GDGCHC | 3 cut(s) | 237, 690, 863 |
| MluCI | AATT | 5 cut(s) | 350, 401, 458, 648, 882 |
| Mly113I | GGCGCC | 1 cut(s) | 633 |
| MlyI | GAGTC | 4 cut(s) | 635, 940, 1098, 1210 |
| MmeI | TCCRAC | 2 cut(s) | 153, 303 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1317 |
| MseI | TTAA | 2 cut(s) | 707, 1293 |
| MspA1I | CMGCKG | 4 cut(s) | 569, 892, 1015, 1204 |
| MspI | CCGG | 8 cut(s) | 27, 102, 380, 419, 425, 491, 630, 753 |
| MspR9I | CCNGG | 1 cut(s) | 437 |
| MvaI | CCWGG | 1 cut(s) | 437 |
| MvnI | CGCG | 4 cut(s) | 272, 389, 612, 998 |
| NarI | GGCGCC | 1 cut(s) | 633 |
| NcoI | CCATGG | 1 cut(s) | 674 |
| NdeII | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| NlaIII | CATG | 4 cut(s) | 115, 223, 435, 678 |
| NlaIV | GGNNCC | 6 cut(s) | 31, 423, 429, 634, 871, 916 |
| NmeAIII | GCCGAG | 1 cut(s) | 207 |
| NmuCI | GTSAC | 1 cut(s) | 694 |
| NsbI | TGCGCA | 1 cut(s) | 116 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 800 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1317 |
| PfeI | GAWTC | 5 cut(s) | 17, 206, 595, 725, 1255 |
| PleI | GAGTC | 4 cut(s) | 634, 940, 1097, 1210 |
| PluTI | GGCGCC | 1 cut(s) | 636 |
| PpsI | GAGTC | 4 cut(s) | 634, 940, 1097, 1210 |
| PshAI | GACNNNNGTC | 1 cut(s) | 185 |
| Psp124BI | GAGCTC | 2 cut(s) | 237, 863 |
| Psp6I | CCWGG | 1 cut(s) | 435 |
| PspGI | CCWGG | 1 cut(s) | 435 |
| PspN4I | GGNNCC | 6 cut(s) | 31, 423, 429, 634, 871, 916 |
| PstI | CTGCAG | 2 cut(s) | 332, 568 |
| PsuI | RGATCY | 3 cut(s) | 496, 516, 914 |
| PvuII | CAGCTG | 1 cut(s) | 1204 |
| RsaI | GTAC | 4 cut(s) | 290, 776, 953, 1328 |
| RsaNI | GTAC | 4 cut(s) | 289, 775, 952, 1327 |
| SacI | GAGCTC | 2 cut(s) | 237, 863 |
| SalI | GTCGAC | 2 cut(s) | 215, 524 |
| SaqAI | TTAA | 2 cut(s) | 707, 1293 |
| Sau3AI | GATC | 8 cut(s) | 145, 176, 471, 496, 516, 618, 670, 914 |
| SchI | GAGTC | 4 cut(s) | 635, 940, 1098, 1210 |
| ScrFI | CCNGG | 1 cut(s) | 437 |
| SduI | GDGCHC | 3 cut(s) | 237, 690, 863 |
| SfcI | CTRYAG | 2 cut(s) | 328, 564 |
| SfoI | GGCGCC | 1 cut(s) | 634 |
| SmlI | CTYRAG | 2 cut(s) | 782, 1330 |
| SmoI | CTYRAG | 2 cut(s) | 782, 1330 |
| Sse9I | AATT | 5 cut(s) | 350, 401, 458, 648, 882 |
| SspDI | GGCGCC | 1 cut(s) | 632 |
| SstI | GAGCTC | 2 cut(s) | 237, 863 |
| StyD4I | CCNGG | 1 cut(s) | 435 |
| StyI | CCWWGG | 1 cut(s) | 674 |
| TaaI | ACNGT | 4 cut(s) | 95, 511, 1197, 1291 |
| TaiI | ACGT | 2 cut(s) | 545, 780 |
| TaqI | TCGA | 9 cut(s) | 179, 216, 464, 477, 525, 539, 803, 965, 1092 |
| TaqII | GACCGA | 3 cut(s) | 199, 218, 482 |
| TasI | AATT | 5 cut(s) | 350, 401, 458, 648, 882 |
| TatI | WGTACW | 1 cut(s) | 951 |
| TauI | GCSGC | 5 cut(s) | 108, 170, 572, 1015, 1136 |
| TfiI | GAWTC | 5 cut(s) | 17, 206, 595, 725, 1255 |
| Tru1I | TTAA | 2 cut(s) | 707, 1293 |
| Tru9I | TTAA | 2 cut(s) | 707, 1293 |
| TscAI | CASTG | 4 cut(s) | 319, 1029, 1200, 1216 |
| TseFI | GTSAC | 1 cut(s) | 694 |
| Tsp45I | GTSAC | 1 cut(s) | 694 |
| TspGWI | ACGGA | 1 cut(s) | 809 |
| TspRI | CASTG | 4 cut(s) | 319, 1029, 1200, 1216 |
| XapI | RAATTY | 1 cut(s) | 458 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XmiI | GTMKAC | 2 cut(s) | 216, 525 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1317 |
| ZraI | GACGTC | 1 cut(s) | 543 |