Prupe.4G008500_v2.0.a1

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
429706 .. 432333
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G008500.1

Sequence Viewer

Length: 1365 bp
ATGGTTTCTCTACAAGATTCTCATTCCAGCTCCAACCACTTCCCTCCTCACACCCGAAACTTCTACTCCCCCTCCTCCACCAAAATCCACAGGCAAACAGGCCGTTCCATGCGCACCATTCGCTCCAACATCTACCACGACGATCAATCCCGAAACTCCTTCACCACCGAAAGATCGTCCTTCGTCTCCGAGAACTTGACCGATTCCGTCATCGACATGCGTCTCGGCGAGCTCGCCTTGCGCACCCACGGCTCGGCTGCCAAGTCCGCCTCCTCCGACGAAGAGTTTCTCCAGCTCTCCCAAGCCTTCAGCGATTTCTCCGCCTGCAGCAGCGACATCTCCGGAGAATTACAGAGACTCGCTACTTTGCCGTCGCCGGAAAACGCGCCTACCTCCGAACCCGAGCCGGAGGTGCCGGAGGAACCCTGCCAGGGGTTTTTGCAAAGGGAGAACTTCTCCACCGAGATCATCGAGAGCATTTCGCCGGAGGATCTTCTACCGACGGTCAAGATCTGCGTCGACGGTCTCCAATCGCCGTCGATTGCCATCAAGCAATCTGCTGCGGCCAAGCTCAGGCTTTTAGCGAAGAACCGGGCGGACAATCGCGCTTTGATAGGCGAGTCCGGTGCGGTCCCTGCTTTAATTCCTCTGCTCCGGTGCAGCGACCCGTGGACTCAGGAGCACGCCGTCACGGCCCTGCTCAACCTCTCTCTGCACGAATCGAACAAGGCGATAATCACCAATGCCGGAGCTATAAAATCGTTAGTGTACGTGCTCAAAACCGGGACGGAGACCTCGAAGCAAAACGCTGCGTGTGCGCTCTTGAGCCTGGCCCTAATTGAAGAGAACAAGAGCTCAATCGGAGCGTGCGGGGCCATCCCGCCGTTGGTTTCGCTGTTAATAAGTGGATCCACGAGGGGCAAAAAAGACGCCTTGACGACCCTGTATAAGCTCTGCTCGATAAAGCCCAACAAAGAGAGGGCAGTGAACGCCGGAGCTGTGAAGCCGCTGGTGGCGCTAGTGGCGGAGCAGGGGACGGGCTTGGCGGAGAAGGCGATGGTGGTGCTGAGTAGCTTGGCTGGGGTTGAGGAGGGGAAGGAGGCCATTGTGGAGGAAGGTGGGCTTGCGGCGCTTGTGGAGGCCATTGAAGATGGGTCGGTCAAAGGGAAGGAGTTTGCGGTGTTGACGCTGTTGCAGCTGTGTACTGAGAGTGTGAGAAACAGAGGGTTGCTGGTGAGGGAAGGAGGGATTCCACCTTTGGTTGCGCTTTCGCAGACTGGGACTCTTAGAGCTAAGCACAAGGCTGAAACGCTTCTTGGGTATCTGAGAGAACCGAGGCAAGAAGCGTCCTCTTCAGCCCTTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

48.46

Weight (kDa)

5.94

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 113, 242
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 519
AccII CGCG 2 cut(s) 386, 606
AccIII TCCGGA 1 cut(s) 341
AclWI GGATC 3 cut(s) 498, 903, 916
AcoI YGGCCR 1 cut(s) 564
AcuI CTGAAG 2 cut(s) 292, 1338
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 2 cut(s) 770, 1204
AfiI CCNNNNNNNGG 5 cut(s) 253, 431, 432, 573, 886
AgsI TTSAA 2 cut(s) 842, 1148
AjnI CCWGG 2 cut(s) 429, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 1299, 1331
Alw21I GWGCWC 4 cut(s) 234, 684, 777, 857
Alw26I GTCTC 5 cut(s) 190, 227, 349, 530, 785
AlwI GGATC 3 cut(s) 498, 903, 916
Ama87I CYCGRG 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 7 cut(s) 100, 564, 693, 831, 873, 1101, 1140
ApeKI GCWGC 7 cut(s) 257, 327, 330, 560, 660, 809, 1195
Asp700I GAANNNNTTC 2 cut(s) 285, 1311
AspLEI GCGC 8 cut(s) 114, 243, 388, 608, 820, 1018, 1132, 1267
AspS9I GGNCC 4 cut(s) 631, 694, 832, 873
AsuC2I CCSGG 2 cut(s) 593, 784
AsuHPI GGTGA 3 cut(s) 154, 730, 1246
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 631
BamHI GGATCC 1 cut(s) 908
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 2 cut(s) 234, 857
BauI CACGAG 1 cut(s) 913
Bbv12I GWGCWC 4 cut(s) 234, 684, 777, 857
BbvI GCAGC 7 cut(s) 244, 339, 342, 547, 672, 796, 1207
BccI CCATC 4 cut(s) 554, 884, 1051, 1145
BceAI ACGGC 7 cut(s) 87, 265, 355, 520, 671, 708, 868
BcgI CGANNNNNNTGC 4 cut(s) 608, 642, 1045, 1079
BciT130I CCWGG 2 cut(s) 431, 830
BcnI CCSGG 2 cut(s) 593, 784
BcoDI GTCTC 5 cut(s) 190, 227, 349, 530, 785
BfaI CTAG 1 cut(s) 1019
BfmI CTRYAG 1 cut(s) 325
BfoI RGCGCY 2 cut(s) 1019, 1133
BglI GCCNNNNNGGC 1 cut(s) 692
BglII AGATCT 1 cut(s) 510
BlpI GCTNAGC 1 cut(s) 1293
Bme1390I CCNGG 4 cut(s) 431, 593, 784, 830
Bme18I GGWCC 1 cut(s) 631
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 4 cut(s) 631, 694, 832, 873
BmiI GGNNCC 5 cut(s) 414, 423, 633, 874, 910
BmrFI CCNGG 4 cut(s) 431, 593, 784, 830
BmrI ACTGGG 1 cut(s) 1287
BmuI ACTGGG 1 cut(s) 1287
BoxI GACNNNNGTC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 572
Bpu1102I GCTNAGC 1 cut(s) 1293
BpuEI CTTGAG 1 cut(s) 844
BpuMI CCSGG 2 cut(s) 593, 784
BsaAI YACGTR 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 930
BsaI GGTCTC 2 cut(s) 530, 785
BsaJI CCNNGG 4 cut(s) 247, 430, 668, 1334
BsaWI WCCGGW 3 cut(s) 341, 623, 654
BsaXI ACNNNNNCTCC 4 cut(s) 50, 56, 80, 86
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 431, 432, 573, 886
Bse1I ACTGG 1 cut(s) 1282
Bse8I GATNNNNATC 1 cut(s) 545
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 431, 830
BseDI CCNNGG 4 cut(s) 247, 430, 668, 1334
BseGI GGATG 1 cut(s) 876
BseJI GATNNNNATC 1 cut(s) 545
BseLI CCNNNNNNNGG 5 cut(s) 253, 431, 432, 573, 886
BseMII CTCAG 5 cut(s) 586, 689, 1058, 1197, 1316
BseNI ACTGG 1 cut(s) 1282
BseRI GAGGAG 4 cut(s) 36, 64, 262, 1103
BseXI GCAGC 7 cut(s) 244, 339, 342, 547, 672, 796, 1207
BseYI CCCAGC 1 cut(s) 1079
BsgI GTGCAG 2 cut(s) 679, 698
Bsh1236I CGCG 2 cut(s) 386, 606
BshFI GGCC 7 cut(s) 102, 566, 695, 833, 875, 1103, 1142
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 4 cut(s) 234, 684, 777, 857
BsiHKCI CYCGRG 1 cut(s) 401
BslFI GGGAC 4 cut(s) 617, 799, 1048, 1294
BslI CCNNNNNNNGG 5 cut(s) 253, 431, 432, 573, 886
BsmAI GTCTC 5 cut(s) 190, 227, 349, 530, 785
BsmBI CGTCTC 2 cut(s) 190, 227
BsmFI GGGAC 4 cut(s) 617, 799, 1048, 1294
BsnI GGCC 7 cut(s) 102, 566, 695, 833, 875, 1103, 1142
Bso31I GGTCTC 2 cut(s) 530, 785
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 4 cut(s) 234, 684, 777, 857
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 6 cut(s) 142, 173, 465, 490, 510, 908
Bsp1720I GCTNAGC 1 cut(s) 1293
BspANI GGCC 7 cut(s) 102, 566, 695, 833, 875, 1103, 1142
BspCNI CTCAG 5 cut(s) 585, 688, 1059, 1198, 1317
BspEI TCCGGA 1 cut(s) 341
BspFNI CGCG 2 cut(s) 386, 606
BspLI GGNNCC 5 cut(s) 414, 423, 633, 874, 910
BspMAI CTGCAG 1 cut(s) 329
BspPI GGATC 3 cut(s) 498, 903, 916
BspT107I GGYRCC 1 cut(s) 412
BspTNI GGTCTC 2 cut(s) 530, 785
BsrI ACTGG 1 cut(s) 1282
BssECI CCNNGG 4 cut(s) 247, 430, 668, 1334
BssMI GATC 6 cut(s) 142, 173, 465, 490, 510, 908
BssNI GRCGYC 1 cut(s) 930
BssSI CACGAG 1 cut(s) 913
Bst2BI CACGAG 1 cut(s) 913
Bst2UI CCWGG 2 cut(s) 431, 830
Bst4CI ACNGT 2 cut(s) 505, 524
Bst6I CTCTTC 3 cut(s) 276, 837, 1357
BstACI GRCGYC 1 cut(s) 930
BstBAI YACGTR 1 cut(s) 772
BstC8I GCNNGC 6 cut(s) 230, 234, 325, 684, 868, 1125
BstDEI CTNAG 7 cut(s) 572, 675, 1067, 1206, 1286, 1293, 1325
BstDSI CCRYGG 2 cut(s) 247, 668
BstF5I GGATG 1 cut(s) 876
BstFNI CGCG 2 cut(s) 386, 606
BstH2I RGCGCY 2 cut(s) 1019, 1133
BstHHI GCGC 8 cut(s) 114, 243, 388, 608, 820, 1018, 1132, 1267
BstKTI GATC 6 cut(s) 145, 176, 468, 493, 513, 911
BstMAI GTCTC 5 cut(s) 190, 227, 349, 530, 785
BstMBI GATC 6 cut(s) 142, 173, 465, 490, 510, 908
BstNI CCWGG 2 cut(s) 431, 830
BstNSI RCATGY 1 cut(s) 220
BstPAI GACNNNNGTC 1 cut(s) 219
BstSCI CCNGG 4 cut(s) 429, 591, 782, 828
BstSFI CTRYAG 1 cut(s) 325
BstUI CGCG 2 cut(s) 386, 606
BstV1I GCAGC 7 cut(s) 244, 339, 342, 547, 672, 796, 1207
BstX2I RGATCY 3 cut(s) 490, 510, 908
BstYI RGATCY 3 cut(s) 490, 510, 908
BsuRI GGCC 7 cut(s) 102, 566, 695, 833, 875, 1103, 1142
BtgI CCRYGG 2 cut(s) 247, 668
BtgZI GCGATG 1 cut(s) 1070
BtsCI GGATG 1 cut(s) 876
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 1 cut(s) 990
Cac8I GCNNGC 6 cut(s) 230, 234, 325, 684, 868, 1125
CfoI GCGC 8 cut(s) 114, 243, 388, 608, 820, 1018, 1132, 1267
Cfr13I GGNCC 4 cut(s) 631, 694, 832, 873
CseI GACGC 5 cut(s) 209, 505, 938, 1195, 1335
Csp6I GTAC 2 cut(s) 769, 1203
CviAII CATG 2 cut(s) 109, 217
CviQI GTAC 2 cut(s) 769, 1203
DdeI CTNAG 7 cut(s) 572, 675, 1067, 1206, 1286, 1293, 1325
DpnI GATC 6 cut(s) 144, 175, 467, 492, 512, 910
DpnII GATC 6 cut(s) 142, 173, 465, 490, 510, 908
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 3 cut(s) 276, 837, 1357
EarI CTCTTC 3 cut(s) 276, 837, 1357
EciI GGCGGA 5 cut(s) 256, 310, 611, 1040, 1061
Ecl136II GAGCTC 2 cut(s) 232, 855
Eco24I GRGCYC 2 cut(s) 234, 857
Eco31I GGTCTC 2 cut(s) 530, 785
Eco47I GGWCC 1 cut(s) 631
Eco53kI GAGCTC 2 cut(s) 232, 855
Eco57I CTGAAG 2 cut(s) 292, 1338
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 2 cut(s) 232, 855
EcoRII CCWGG 2 cut(s) 429, 828
EcoT38I GRGCYC 2 cut(s) 234, 857
Esp3I CGTCTC 2 cut(s) 190, 227
FaeI CATG 2 cut(s) 112, 220
FaiI YATR 4 cut(s) 110, 218, 755, 948
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FaqI GGGAC 4 cut(s) 617, 799, 1048, 1294
FatI CATG 2 cut(s) 108, 216
FauI CCCGC 2 cut(s) 863, 888
FblI GTMKAC 1 cut(s) 519
FokI GGATG 1 cut(s) 863
FriOI GRGCYC 2 cut(s) 234, 857
FspAI RTGCGCAY 1 cut(s) 113
FspBI CTAG 1 cut(s) 1019
FspI TGCGCA 2 cut(s) 113, 242
GlaI GCGC 8 cut(s) 113, 242, 387, 607, 819, 1017, 1131, 1266
GsaI CCCAGC 1 cut(s) 1083
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 2 cut(s) 1019, 1133
HaeIII GGCC 7 cut(s) 102, 566, 695, 833, 875, 1103, 1142
HgaI GACGC 5 cut(s) 209, 505, 938, 1195, 1335
HhaI GCGC 8 cut(s) 114, 243, 388, 608, 820, 1018, 1132, 1267
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 2 cut(s) 112, 220
Hin6I GCGC 8 cut(s) 112, 241, 386, 606, 818, 1016, 1130, 1265
HinP1I GCGC 8 cut(s) 112, 241, 386, 606, 818, 1016, 1130, 1265
HincII GTYRAC 2 cut(s) 520, 1185
HindII GTYRAC 2 cut(s) 520, 1185
HinfI GANTC 8 cut(s) 17, 203, 357, 620, 673, 719, 1249, 1282
HphI GGTGA 3 cut(s) 154, 730, 1246
Hpy166II GTNNAC 6 cut(s) 520, 672, 769, 988, 1185, 1203
Hpy188I TCNGA 5 cut(s) 190, 277, 397, 863, 1326
Hpy188III TCNNGA 6 cut(s) 150, 342, 472, 508, 677, 823
Hpy8I GTNNAC 6 cut(s) 520, 672, 769, 988, 1185, 1203
Hpy99I CGWCG 7 cut(s) 143, 281, 376, 505, 521, 524, 541
HpyAV CCTTC 8 cut(s) 169, 190, 316, 1045, 1090, 1109, 1162, 1235
HpyCH4III ACNGT 2 cut(s) 505, 524
HpyCH4IV ACGT 1 cut(s) 771
HpyCH4V TGCA 5 cut(s) 327, 442, 660, 715, 1195
HpyF3I CTNAG 7 cut(s) 572, 675, 1067, 1206, 1286, 1293, 1325
HpySE526I ACGT 1 cut(s) 771
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 2 cut(s) 112, 220
HspAI GCGC 8 cut(s) 112, 241, 386, 606, 818, 1016, 1130, 1265
Kpn2I TCCGGA 1 cut(s) 341
Kzo9I GATC 6 cut(s) 142, 173, 465, 490, 510, 908
LmnI GCTCC 8 cut(s) 35, 128, 657, 679, 749, 863, 995, 1027
Lsp1109I GCAGC 7 cut(s) 244, 339, 342, 547, 672, 796, 1207
MaeI CTAG 1 cut(s) 1019
MaeII ACGT 1 cut(s) 771
MaeIII GTNAC 1 cut(s) 688
MalI GATC 6 cut(s) 144, 175, 467, 492, 512, 910
MboI GATC 6 cut(s) 142, 173, 465, 490, 510, 908
MboII GAAGA 6 cut(s) 293, 485, 598, 854, 1160, 1344
MflI RGATCY 3 cut(s) 490, 510, 908
MhlI GDGCHC 4 cut(s) 234, 684, 777, 857
MluCI AATT 3 cut(s) 347, 642, 837
MlyI GAGTC 4 cut(s) 351, 629, 667, 1276
MmeI TCCRAC 3 cut(s) 57, 150, 300
MroI TCCGGA 1 cut(s) 341
MroXI GAANNNNTTC 2 cut(s) 285, 1311
MseI TTAA 2 cut(s) 641, 899
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 2 cut(s) 1009, 1198
MspR9I CCNGG 4 cut(s) 431, 593, 784, 830
MvaI CCWGG 2 cut(s) 431, 830
MvnI CGCG 2 cut(s) 386, 606
NciI CCSGG 2 cut(s) 593, 784
NdeII GATC 6 cut(s) 142, 173, 465, 490, 510, 908
NlaIII CATG 2 cut(s) 112, 220
NlaIV GGNNCC 5 cut(s) 414, 423, 633, 874, 910
NmeAIII GCCGAG 2 cut(s) 204, 233
NmuCI GTSAC 1 cut(s) 688
NsbI TGCGCA 2 cut(s) 113, 242
NspI RCATGY 1 cut(s) 220
PcsI WCGNNNNNNNCGW 2 cut(s) 728, 794
PdmI GAANNNNTTC 2 cut(s) 285, 1311
PfeI GAWTC 4 cut(s) 17, 203, 719, 1249
PleI GAGTC 4 cut(s) 351, 628, 667, 1276
PpsI GAGTC 4 cut(s) 351, 628, 667, 1276
Ppu21I YACGTR 1 cut(s) 772
PshAI GACNNNNGTC 1 cut(s) 219
Psp124BI GAGCTC 2 cut(s) 234, 857
Psp6I CCWGG 2 cut(s) 429, 828
PspFI CCCAGC 1 cut(s) 1079
PspGI CCWGG 2 cut(s) 429, 828
PspN4I GGNNCC 5 cut(s) 414, 423, 633, 874, 910
PspPI GGNCC 4 cut(s) 631, 694, 832, 873
PstI CTGCAG 1 cut(s) 329
PsuI RGATCY 3 cut(s) 490, 510, 908
PvuII CAGCTG 1 cut(s) 1198
RsaI GTAC 2 cut(s) 770, 1204
RsaNI GTAC 2 cut(s) 769, 1203
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 2 cut(s) 234, 857
SalI GTCGAC 1 cut(s) 518
SaqAI TTAA 2 cut(s) 641, 899
Sau3AI GATC 6 cut(s) 142, 173, 465, 490, 510, 908
Sau96I GGNCC 4 cut(s) 631, 694, 832, 873
SchI GAGTC 4 cut(s) 351, 629, 667, 1276
ScrFI CCNGG 4 cut(s) 431, 593, 784, 830
SduI GDGCHC 4 cut(s) 234, 684, 777, 857
SfcI CTRYAG 1 cut(s) 325
SgrDI CGTCGACG 1 cut(s) 518
SinI GGWCC 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 823
SmoI CTYRAG 1 cut(s) 823
Sse9I AATT 3 cut(s) 347, 642, 837
SspMI CTAG 1 cut(s) 1019
SstI GAGCTC 2 cut(s) 234, 857
StyD4I CCNGG 4 cut(s) 429, 591, 782, 828
TaaI ACNGT 2 cut(s) 505, 524
TaiI ACGT 1 cut(s) 774
TaqI TCGA 7 cut(s) 213, 471, 519, 539, 722, 797, 959
TaqII GACCGA 2 cut(s) 215, 1147
TasI AATT 3 cut(s) 347, 642, 837
TatI WGTACW 1 cut(s) 1202
TauI GCSGC 3 cut(s) 566, 1009, 1130
TfiI GAWTC 4 cut(s) 17, 203, 719, 1249
Tru1I TTAA 2 cut(s) 641, 899
Tru9I TTAA 2 cut(s) 641, 899
TscAI CASTG 1 cut(s) 990
TseFI GTSAC 1 cut(s) 688
TseI GCWGC 7 cut(s) 257, 327, 330, 560, 660, 809, 1195
Tsp45I GTSAC 1 cut(s) 688
TspGWI ACGGA 2 cut(s) 196, 803
TspRI CASTG 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 631
XceI RCATGY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 2 cut(s) 285, 1311
XspI CTAG 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.