U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G16490 |
| fragaria_vesca | FvH4_3g00770 |
| malus_domestica | MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1 |
| prunus_persica | Prupe.4G008500_v2.0.a1 |
| pyrus_communis | pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300 |
| rosa_chinensis | RchiOBHm_Chr5g0001011 |
| rosa_laevigata | RLG00000030913 |
| rosa_multiflora | Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00075270 |
| rosa_rugosa | Rorug04G0388900 |
| rosa_samantha | Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700 |
| rosa_wichuraiana | Rw5G000830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1016 |
| AccB1I | GGYRCC | 1 cut(s) | 611 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1289 |
| AccI | GTMKAC | 1 cut(s) | 504 |
| AccII | CGCG | 3 cut(s) | 88, 344, 591 |
| AciI | CCGC | 9 cut(s) | 43, 147, 237, 240, 249, 640, 648, 744, 1082 |
| AclWI | GGATC | 3 cut(s) | 53, 84, 483 |
| AcoI | YGGCCR | 1 cut(s) | 16 |
| AcuI | CTGAAG | 3 cut(s) | 274, 464, 1056 |
| AcyI | GRCGYC | 1 cut(s) | 612 |
| AdeI | CACNNNGTG | 2 cut(s) | 947, 1175 |
| AfaI | GTAC | 3 cut(s) | 269, 1034, 1137 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 39, 365, 416, 558, 877, 1208, 1289 |
| AflIII | ACRYGT | 1 cut(s) | 1285 |
| AgsI | TTSAA | 5 cut(s) | 827, 934, 955, 972, 1129 |
| AjnI | CCWGG | 3 cut(s) | 123, 1107, 1171 |
| AluBI | AGCT | 6 cut(s) | 214, 234, 277, 348, 556, 1065 |
| AluI | AGCT | 6 cut(s) | 214, 234, 277, 348, 556, 1065 |
| Alw21I | GWGCWC | 3 cut(s) | 216, 662, 943 |
| Alw26I | GTCTC | 2 cut(s) | 172, 813 |
| AlwI | GGATC | 3 cut(s) | 53, 84, 483 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| Ama87I | CYCGRG | 2 cut(s) | 132, 322 |
| AoxI | GGCC | 4 cut(s) | 16, 368, 508, 579 |
| ApeKI | GCWGC | 6 cut(s) | 309, 392, 545, 548, 637, 645 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 839, 871 |
| AspLEI | GCGC | 4 cut(s) | 204, 397, 593, 614 |
| AspS9I | GGNCC | 4 cut(s) | 368, 579, 866, 1104 |
| AsuC2I | CCSGG | 2 cut(s) | 578, 871 |
| AsuHPI | GGTGA | 3 cut(s) | 459, 704, 1154 |
| AvaI | CYCGRG | 2 cut(s) | 132, 322 |
| AvaII | GGWCC | 2 cut(s) | 866, 1104 |
| BanI | GGYRCC | 1 cut(s) | 611 |
| BanII | GRGCYC | 2 cut(s) | 216, 1230 |
| Bbv12I | GWGCWC | 3 cut(s) | 216, 662, 943 |
| BbvI | GCAGC | 6 cut(s) | 321, 379, 532, 535, 624, 657 |
| BceAI | ACGGC | 8 cut(s) | 31, 56, 337, 505, 515, 523, 599, 649 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 284, 318 |
| BciT130I | CCWGG | 3 cut(s) | 125, 1109, 1173 |
| BcnI | CCSGG | 2 cut(s) | 578, 871 |
| BcoDI | GTCTC | 2 cut(s) | 172, 813 |
| BfaI | CTAG | 2 cut(s) | 732, 983 |
| BfmI | CTRYAG | 1 cut(s) | 307 |
| BfoI | RGCGCY | 1 cut(s) | 615 |
| BglII | AGATCT | 1 cut(s) | 495 |
| BisI | GCNGC | 8 cut(s) | 147, 240, 310, 393, 546, 549, 638, 646 |
| BlsI | GCNGC | 8 cut(s) | 148, 241, 311, 394, 547, 550, 639, 647 |
| Bme1390I | CCNGG | 5 cut(s) | 125, 578, 871, 1109, 1173 |
| Bme18I | GGWCC | 2 cut(s) | 866, 1104 |
| BmeT110I | CYCGRG | 2 cut(s) | 132, 322 |
| BmgT120I | GGNCC | 4 cut(s) | 368, 579, 866, 1104 |
| BmiI | GGNNCC | 7 cut(s) | 402, 408, 613, 868, 1106, 1227, 1251 |
| BmrFI | CCNGG | 5 cut(s) | 125, 578, 871, 1109, 1173 |
| BmrI | ACTGGG | 1 cut(s) | 1148 |
| BmuI | ACTGGG | 1 cut(s) | 1148 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1109 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 425, 457 |
| BpmI | CTGGAG | 1 cut(s) | 257 |
| Bpu10I | CCTNAGC | 2 cut(s) | 557, 1206 |
| BpuMI | CCSGG | 2 cut(s) | 578, 871 |
| Bsa29I | ATCGAT | 1 cut(s) | 57 |
| BsaAI | YACGTR | 1 cut(s) | 1036 |
| BsaBI | GATNNNNATC | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 612 |
| BsaJI | CCNNGG | 6 cut(s) | 38, 205, 387, 869, 1107, 1218 |
| BsaWI | WCCGGW | 1 cut(s) | 403 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 39, 365, 416, 558, 877, 1208, 1289 |
| Bse118I | RCCGGY | 1 cut(s) | 1252 |
| Bse1I | ACTGG | 1 cut(s) | 1143 |
| Bse8I | GATNNNNATC | 1 cut(s) | 25 |
| BseBI | CCWGG | 3 cut(s) | 125, 1109, 1173 |
| BseCI | ATCGAT | 1 cut(s) | 57 |
| BseDI | CCNNGG | 6 cut(s) | 38, 205, 387, 869, 1107, 1218 |
| BseJI | GATNNNNATC | 1 cut(s) | 25 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 39, 365, 416, 558, 877, 1208, 1289 |
| BseMII | CTCAG | 1 cut(s) | 571 |
| BseNI | ACTGG | 1 cut(s) | 1143 |
| BseRI | GAGGAG | 3 cut(s) | 244, 278, 1238 |
| BseX3I | CGGCCG | 1 cut(s) | 16 |
| BseXI | GCAGC | 6 cut(s) | 321, 379, 532, 535, 624, 657 |
| BseYI | CCCAGC | 1 cut(s) | 1197 |
| BsgI | GTGCAG | 1 cut(s) | 664 |
| Bsh1236I | CGCG | 3 cut(s) | 88, 344, 591 |
| Bsh1285I | CGRYCG | 4 cut(s) | 19, 106, 192, 447 |
| BshFI | GGCC | 4 cut(s) | 18, 370, 510, 581 |
| BshNI | GGYRCC | 1 cut(s) | 611 |
| BshVI | ATCGAT | 1 cut(s) | 57 |
| BsiEI | CGRYCG | 4 cut(s) | 19, 106, 192, 447 |
| BsiHKAI | GWGCWC | 3 cut(s) | 216, 662, 943 |
| BsiHKCI | CYCGRG | 2 cut(s) | 132, 322 |
| BsiSI | CCGG | 7 cut(s) | 359, 398, 404, 577, 609, 871, 1253 |
| BslFI | GGGAC | 2 cut(s) | 602, 852 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 39, 365, 416, 558, 877, 1208, 1289 |
| BsmAI | GTCTC | 2 cut(s) | 172, 813 |
| BsmFI | GGGAC | 2 cut(s) | 602, 852 |
| BsmI | GAATGC | 2 cut(s) | 991, 1293 |
| BsnI | GGCC | 4 cut(s) | 18, 370, 510, 581 |
| BsoBI | CYCGRG | 2 cut(s) | 132, 322 |
| Bsp1286I | GDGCHC | 4 cut(s) | 216, 662, 943, 1230 |
| Bsp143I | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| Bsp68I | TCGCGA | 1 cut(s) | 344 |
| BspACI | CCGC | 9 cut(s) | 43, 147, 237, 240, 249, 640, 648, 744, 1082 |
| BspANI | GGCC | 4 cut(s) | 18, 370, 510, 581 |
| BspCNI | CTCAG | 1 cut(s) | 570 |
| BspDI | ATCGAT | 1 cut(s) | 57 |
| BspFNI | CGCG | 3 cut(s) | 88, 344, 591 |
| BspHI | TCATGA | 1 cut(s) | 1053 |
| BspLI | GGNNCC | 7 cut(s) | 402, 408, 613, 868, 1106, 1227, 1251 |
| BspMAI | CTGCAG | 1 cut(s) | 311 |
| BspPI | GGATC | 3 cut(s) | 53, 84, 483 |
| BspT107I | GGYRCC | 1 cut(s) | 611 |
| BsrFI | RCCGGY | 1 cut(s) | 1252 |
| BsrI | ACTGG | 1 cut(s) | 1143 |
| BssAI | RCCGGY | 1 cut(s) | 1252 |
| BssECI | CCNNGG | 6 cut(s) | 38, 205, 387, 869, 1107, 1218 |
| BssMI | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| BssNI | GRCGYC | 1 cut(s) | 612 |
| BssT1I | CCWWGG | 1 cut(s) | 1218 |
| Bst2UI | CCWGG | 3 cut(s) | 125, 1109, 1173 |
| Bst4CI | ACNGT | 4 cut(s) | 490, 679, 862, 911 |
| Bst6I | CTCTTC | 1 cut(s) | 929 |
| BstACI | GRCGYC | 1 cut(s) | 612 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 947, 1262 |
| BstBAI | YACGTR | 1 cut(s) | 1036 |
| BstDEI | CTNAG | 4 cut(s) | 557, 944, 1059, 1206 |
| BstDSI | CCRYGG | 1 cut(s) | 38 |
| BstFNI | CGCG | 3 cut(s) | 88, 344, 591 |
| BstH2I | RGCGCY | 1 cut(s) | 615 |
| BstHHI | GCGC | 4 cut(s) | 204, 397, 593, 614 |
| BstKTI | GATC | 6 cut(s) | 48, 57, 92, 158, 478, 498 |
| BstMAI | GTCTC | 2 cut(s) | 172, 813 |
| BstMBI | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| BstMCI | CGRYCG | 4 cut(s) | 19, 106, 192, 447 |
| BstNI | CCWGG | 3 cut(s) | 125, 1109, 1173 |
| BstNSI | RCATGY | 4 cut(s) | 202, 1088, 1260, 1289 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1109 |
| BstSCI | CCNGG | 5 cut(s) | 123, 576, 869, 1107, 1171 |
| BstSFI | CTRYAG | 1 cut(s) | 307 |
| BstUI | CGCG | 3 cut(s) | 88, 344, 591 |
| BstV1I | GCAGC | 6 cut(s) | 321, 379, 532, 535, 624, 657 |
| BstX2I | RGATCY | 2 cut(s) | 475, 495 |
| BstYI | RGATCY | 2 cut(s) | 475, 495 |
| BstZI | CGGCCG | 1 cut(s) | 16 |
| Bsu15I | ATCGAT | 1 cut(s) | 57 |
| BsuRI | GGCC | 4 cut(s) | 18, 370, 510, 581 |
| BsuTUI | ATCGAT | 1 cut(s) | 57 |
| BtgI | CCRYGG | 1 cut(s) | 38 |
| BtsI | GCAGTG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 1 cut(s) | 319 |
| BtuMI | TCGCGA | 1 cut(s) | 344 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CciI | TCATGA | 1 cut(s) | 1053 |
| CfoI | GCGC | 4 cut(s) | 204, 397, 593, 614 |
| Cfr10I | RCCGGY | 1 cut(s) | 1252 |
| Cfr13I | GGNCC | 4 cut(s) | 368, 579, 866, 1104 |
| ClaI | ATCGAT | 1 cut(s) | 57 |
| CseI | GACGC | 3 cut(s) | 490, 660, 776 |
| CsiI | ACCWGGT | 1 cut(s) | 1171 |
| Csp6I | GTAC | 3 cut(s) | 268, 1033, 1136 |
| CviAII | CATG | 9 cut(s) | 65, 199, 411, 809, 1054, 1085, 1257, 1262, 1286 |
| CviQI | GTAC | 3 cut(s) | 268, 1033, 1136 |
| DdeI | CTNAG | 4 cut(s) | 557, 944, 1059, 1206 |
| DinI | GGCGCC | 1 cut(s) | 613 |
| DpnI | GATC | 6 cut(s) | 47, 56, 91, 157, 477, 497 |
| DpnII | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| DraIII | CACNNNGTG | 2 cut(s) | 947, 1175 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1016 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1016 |
| EaeI | YGGCCR | 1 cut(s) | 16 |
| EagI | CGGCCG | 1 cut(s) | 16 |
| Eam1104I | CTCTTC | 1 cut(s) | 929 |
| EarI | CTCTTC | 1 cut(s) | 929 |
| EciI | GGCGGA | 3 cut(s) | 58, 226, 238 |
| Ecl136II | GAGCTC | 1 cut(s) | 214 |
| EclXI | CGGCCG | 1 cut(s) | 16 |
| Eco130I | CCWWGG | 1 cut(s) | 1218 |
| Eco24I | GRGCYC | 2 cut(s) | 216, 1230 |
| Eco32I | GATATC | 1 cut(s) | 319 |
| Eco47I | GGWCC | 2 cut(s) | 866, 1104 |
| Eco52I | CGGCCG | 1 cut(s) | 16 |
| Eco53kI | GAGCTC | 1 cut(s) | 214 |
| Eco57I | CTGAAG | 3 cut(s) | 274, 464, 1056 |
| Eco88I | CYCGRG | 2 cut(s) | 132, 322 |
| EcoICRI | GAGCTC | 1 cut(s) | 214 |
| EcoO109I | RGGNCCY | 1 cut(s) | 866 |
| EcoRII | CCWGG | 3 cut(s) | 123, 1107, 1171 |
| EcoRV | GATATC | 1 cut(s) | 319 |
| EcoT14I | CCWWGG | 1 cut(s) | 1218 |
| EcoT38I | GRGCYC | 2 cut(s) | 216, 1230 |
| EgeI | GGCGCC | 1 cut(s) | 613 |
| EheI | GGCGCC | 1 cut(s) | 613 |
| ErhI | CCWWGG | 1 cut(s) | 1218 |
| FaeI | CATG | 9 cut(s) | 68, 202, 414, 812, 1057, 1088, 1260, 1265, 1289 |
| FaqI | GGGAC | 2 cut(s) | 602, 852 |
| FatI | CATG | 9 cut(s) | 64, 198, 410, 808, 1053, 1084, 1256, 1261, 1285 |
| FauI | CCCGC | 1 cut(s) | 737 |
| FblI | GTMKAC | 1 cut(s) | 504 |
| Fnu4HI | GCNGC | 8 cut(s) | 147, 240, 310, 393, 546, 549, 638, 646 |
| FriOI | GRGCYC | 2 cut(s) | 216, 1230 |
| Fsp4HI | GCNGC | 8 cut(s) | 147, 240, 310, 393, 546, 549, 638, 646 |
| FspBI | CTAG | 2 cut(s) | 732, 983 |
| GlaI | GCGC | 4 cut(s) | 203, 396, 592, 613 |
| GluI | GCNGC | 8 cut(s) | 147, 240, 310, 393, 546, 549, 638, 646 |
| GsaI | CCCAGC | 1 cut(s) | 1201 |
| GsuI | CTGGAG | 1 cut(s) | 257 |
| HaeII | RGCGCY | 1 cut(s) | 615 |
| HaeIII | GGCC | 4 cut(s) | 18, 370, 510, 581 |
| HapII | CCGG | 7 cut(s) | 359, 398, 404, 577, 609, 871, 1253 |
| HgaI | GACGC | 3 cut(s) | 490, 660, 776 |
| HhaI | GCGC | 4 cut(s) | 204, 397, 593, 614 |
| Hin1I | GRCGYC | 1 cut(s) | 612 |
| Hin1II | CATG | 9 cut(s) | 68, 202, 414, 812, 1057, 1088, 1260, 1265, 1289 |
| Hin6I | GCGC | 4 cut(s) | 202, 395, 591, 612 |
| HinP1I | GCGC | 4 cut(s) | 202, 395, 591, 612 |
| HincII | GTYRAC | 2 cut(s) | 196, 505 |
| HindII | GTYRAC | 2 cut(s) | 196, 505 |
| HinfI | GANTC | 8 cut(s) | 59, 116, 128, 185, 339, 380, 605, 728 |
| HpaII | CCGG | 7 cut(s) | 359, 398, 404, 577, 609, 871, 1253 |
| HphI | GGTGA | 3 cut(s) | 459, 704, 1154 |
| Hpy166II | GTNNAC | 5 cut(s) | 112, 196, 505, 707, 858 |
| Hpy188I | TCNGA | 4 cut(s) | 172, 259, 379, 1075 |
| Hpy188III | TCNNGA | 9 cut(s) | 52, 113, 132, 324, 343, 442, 493, 732, 1054 |
| Hpy8I | GTNNAC | 5 cut(s) | 112, 196, 505, 707, 858 |
| Hpy99I | CGWCG | 6 cut(s) | 263, 358, 490, 506, 509, 526 |
| HpyAV | CCTTC | 2 cut(s) | 151, 298 |
| HpyCH4III | ACNGT | 4 cut(s) | 490, 679, 862, 911 |
| HpyCH4IV | ACGT | 2 cut(s) | 1035, 1050 |
| HpyF3I | CTNAG | 4 cut(s) | 557, 944, 1059, 1206 |
| HpySE526I | ACGT | 2 cut(s) | 1035, 1050 |
| Hsp92I | GRCGYC | 1 cut(s) | 612 |
| Hsp92II | CATG | 9 cut(s) | 68, 202, 414, 812, 1057, 1088, 1260, 1265, 1289 |
| HspAI | GCGC | 4 cut(s) | 202, 395, 591, 612 |
| KasI | GGCGCC | 1 cut(s) | 611 |
| KroI | GCCGGC | 1 cut(s) | 1252 |
| KroNI | GCCGGC | 1 cut(s) | 1254 |
| Kzo9I | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| LmnI | GCTCC | 5 cut(s) | 239, 406, 657, 1225, 1249 |
| Lsp1109I | GCAGC | 6 cut(s) | 321, 379, 532, 535, 624, 657 |
| MabI | ACCWGGT | 1 cut(s) | 1171 |
| MaeI | CTAG | 2 cut(s) | 732, 983 |
| MaeII | ACGT | 2 cut(s) | 1035, 1050 |
| MaeIII | GTNAC | 3 cut(s) | 666, 905, 997 |
| MalI | GATC | 6 cut(s) | 47, 56, 91, 157, 477, 497 |
| MboI | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| MboII | GAAGA | 3 cut(s) | 470, 583, 946 |
| MflI | RGATCY | 2 cut(s) | 475, 495 |
| MhlI | GDGCHC | 4 cut(s) | 216, 662, 943, 1230 |
| MluCI | AATT | 6 cut(s) | 7, 329, 627, 827, 834, 1027 |
| Mly113I | GGCGCC | 1 cut(s) | 612 |
| MlyI | GAGTC | 5 cut(s) | 110, 122, 333, 614, 737 |
| MmeI | TCCRAC | 1 cut(s) | 282 |
| MroNI | GCCGGC | 1 cut(s) | 1252 |
| MspA1I | CMGCKG | 1 cut(s) | 648 |
| MspI | CCGG | 7 cut(s) | 359, 398, 404, 577, 609, 871, 1253 |
| MspR9I | CCNGG | 5 cut(s) | 125, 578, 871, 1109, 1173 |
| Mva1269I | GAATGC | 2 cut(s) | 991, 1293 |
| MvaI | CCWGG | 3 cut(s) | 125, 1109, 1173 |
| MvnI | CGCG | 3 cut(s) | 88, 344, 591 |
| NaeI | GCCGGC | 1 cut(s) | 1254 |
| NarI | GGCGCC | 1 cut(s) | 612 |
| NciI | CCSGG | 2 cut(s) | 578, 871 |
| NdeII | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| NgoMIV | GCCGGC | 1 cut(s) | 1252 |
| NlaIII | CATG | 9 cut(s) | 68, 202, 414, 812, 1057, 1088, 1260, 1265, 1289 |
| NlaIV | GGNNCC | 7 cut(s) | 402, 408, 613, 868, 1106, 1227, 1251 |
| NmeAIII | GCCGAG | 2 cut(s) | 186, 412 |
| NmuCI | GTSAC | 2 cut(s) | 666, 905 |
| NruI | TCGCGA | 1 cut(s) | 344 |
| NspI | RCATGY | 4 cut(s) | 202, 1088, 1260, 1289 |
| PaeI | GCATGC | 1 cut(s) | 1260 |
| PagI | TCATGA | 1 cut(s) | 1053 |
| PciI | ACATGT | 1 cut(s) | 1285 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 54 |
| PctI | GAATGC | 2 cut(s) | 991, 1293 |
| PdiI | GCCGGC | 1 cut(s) | 1254 |
| PfeI | GAWTC | 3 cut(s) | 59, 185, 380 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1289 |
| PkrI | GCNGC | 8 cut(s) | 148, 241, 311, 394, 547, 550, 639, 647 |
| PleI | GAGTC | 5 cut(s) | 110, 122, 333, 613, 736 |
| PluTI | GGCGCC | 1 cut(s) | 615 |
| PpsI | GAGTC | 5 cut(s) | 110, 122, 333, 613, 736 |
| Ppu21I | YACGTR | 1 cut(s) | 1036 |
| PpuMI | RGGWCCY | 1 cut(s) | 866 |
| PscI | ACATGT | 1 cut(s) | 1285 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1109 |
| Psp124BI | GAGCTC | 1 cut(s) | 216 |
| Psp5II | RGGWCCY | 1 cut(s) | 866 |
| Psp6I | CCWGG | 3 cut(s) | 123, 1107, 1171 |
| PspFI | CCCAGC | 1 cut(s) | 1197 |
| PspGI | CCWGG | 3 cut(s) | 123, 1107, 1171 |
| PspN4I | GGNNCC | 7 cut(s) | 402, 408, 613, 868, 1106, 1227, 1251 |
| PspPI | GGNCC | 4 cut(s) | 368, 579, 866, 1104 |
| PspPPI | RGGWCCY | 1 cut(s) | 866 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1025, 1057 |
| PstI | CTGCAG | 1 cut(s) | 311 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| PsuI | RGATCY | 2 cut(s) | 475, 495 |
| RruI | TCGCGA | 1 cut(s) | 344 |
| RsaI | GTAC | 3 cut(s) | 269, 1034, 1137 |
| RsaNI | GTAC | 3 cut(s) | 268, 1033, 1136 |
| SacI | GAGCTC | 1 cut(s) | 216 |
| SalI | GTCGAC | 1 cut(s) | 503 |
| SatI | GCNGC | 8 cut(s) | 147, 240, 310, 393, 546, 549, 638, 646 |
| Sau3AI | GATC | 6 cut(s) | 45, 54, 89, 155, 475, 495 |
| Sau96I | GGNCC | 4 cut(s) | 368, 579, 866, 1104 |
| SchI | GAGTC | 5 cut(s) | 110, 122, 333, 614, 737 |
| ScrFI | CCNGG | 5 cut(s) | 125, 578, 871, 1109, 1173 |
| SduI | GDGCHC | 4 cut(s) | 216, 662, 943, 1230 |
| SexAI | ACCWGGT | 1 cut(s) | 1171 |
| SfcI | CTRYAG | 1 cut(s) | 307 |
| SfoI | GGCGCC | 1 cut(s) | 613 |
| SgrDI | CGTCGACG | 1 cut(s) | 503 |
| SinI | GGWCC | 2 cut(s) | 866, 1104 |
| SphI | GCATGC | 1 cut(s) | 1260 |
| Sse9I | AATT | 6 cut(s) | 7, 329, 627, 827, 834, 1027 |
| SsiI | CCGC | 9 cut(s) | 43, 147, 237, 240, 249, 640, 648, 744, 1082 |
| SspDI | GGCGCC | 1 cut(s) | 611 |
| SspMI | CTAG | 2 cut(s) | 732, 983 |
| SstI | GAGCTC | 1 cut(s) | 216 |
| StyD4I | CCNGG | 5 cut(s) | 123, 576, 869, 1107, 1171 |
| StyI | CCWWGG | 1 cut(s) | 1218 |
| TaaI | ACNGT | 4 cut(s) | 490, 679, 862, 911 |
| TaiI | ACGT | 2 cut(s) | 1038, 1053 |
| TaqI | TCGA | 5 cut(s) | 57, 443, 456, 504, 1149 |
| TaqII | GACCGA | 3 cut(s) | 120, 178, 461 |
| TasI | AATT | 6 cut(s) | 7, 329, 627, 827, 834, 1027 |
| TauI | GCSGC | 2 cut(s) | 149, 242 |
| TfiI | GAWTC | 3 cut(s) | 59, 185, 380 |
| TscAI | CASTG | 1 cut(s) | 319 |
| TseFI | GTSAC | 2 cut(s) | 666, 905 |
| TseI | GCWGC | 6 cut(s) | 309, 392, 545, 548, 637, 645 |
| Tsp45I | GTSAC | 2 cut(s) | 666, 905 |
| TspGWI | ACGGA | 1 cut(s) | 864 |
| TspRI | CASTG | 1 cut(s) | 319 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1289 |
| VpaK11BI | GGWCC | 2 cut(s) | 866, 1104 |
| XbaI | TCTAGA | 1 cut(s) | 731 |
| XceI | RCATGY | 4 cut(s) | 202, 1088, 1260, 1289 |
| XmiI | GTMKAC | 1 cut(s) | 504 |
| XspI | CTAG | 2 cut(s) | 732, 983 |