Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008028

Physical Location & Seq

Genomic Coordinates Forward (+)

18343604 .. 18344526

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1170200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCGCCTTGGCGAGCTCACCTTACGCACCCATAGCTCCGCCGCCAAGTCCGTCTCATCTGACAAGGAGTACCTCCAGCTCTCCCAAGCCTTCAGCGATTTCTCTGCCTGCAGCAGTGATATCTCGGGAGAATTGCAACGACTTGCGAGCTTGCCGTCGCCGGAAAACGGGCCGACCTCCGAATCAACCGAGGCTGCGCCGGAACCGGAGCCATGTCAGGGTATTTCCCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGACCTCCAATCGCCGTTGCTTGCCGTGAAGCAATCTGCTGCTGCCAAGCTCAGGCTTTTAGCGAAGAACCGGGCCGACAATCACGCCTTGATTGGCGAGTCCGGCGCCGTCCCTGCTCTAATTCCTCTACTACGGTGCAGCGATCCGTGGACGCAGGAGCACGCCGACACAGCACTATTTAACCTCTCACTGCACGAATCGAACAAGGCAATAATCACCAATGCTGGAGCTATAAAGTCGTTAGTGTATGTCCTCAAGACCGAGACAGAGACCTCGAAGCAAAACGCCGCCTGTGCGCTGCTGAGCTTGGCGCTAATTGAAGAGAACAAGGGCTCAATCGGAGCATGCAACGCGATTCCGCCCCTGGTTTCCCTGTTAATAAGTGGATCGATGAGGGGCAAAAATGACGCCTTGACGACTCTGTACAAGCTCTGCTCGATAAAGCCCAACAAAGAGAGGGCGGTGAGCGCCGGAGCTGTGAAGCCGCTAGTGGCGCTGGTGGCGGAGCAGAGGACGGGCCTGGCGGAGAAGGCGATGGTGGTGCTAAGTAGCTTGGCAGGAGTTGAGGAGGGAAATGAGGCTATTGTGGAGGAGAAGGACATGGCGGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

294

Amino Acids

30.81

Weight (kDa)

5.18

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	101 - 288	6e-18	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	148 - 277	1.8e-09	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16490
fragaria_vesca	FvH4_3g00770
malus_domestica	MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1
prunus_persica	Prupe.4G008500_v2.0.a1
pyrus_communis	pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300
rosa_chinensis	RchiOBHm_Chr5g0001011
rosa_laevigata	RLG00000030913
rosa_multiflora	Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075270
rosa_rugosa	Rorug04G0388900
rosa_samantha	Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700
rosa_wichuraiana	Rw5G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	620
AciI	CCGC	9 cut(s)	39, 42, 555, 626, 728, 752, 770, 791, 872
AclWI	GGATC	3 cut(s)	243, 404, 661
AcuI	CTGAAG	2 cut(s)	76, 224
AcyI	GRCGYC	2 cut(s)	372, 675
AfaI	GTAC	2 cut(s)	71, 692
AfiI	CCNNNNNNNGG	3 cut(s)	167, 218, 318
AgsI	TTSAA	1 cut(s)	587
AjnI	CCWGG	2 cut(s)	630, 786
Alw21I	GWGCWC	2 cut(s)	18, 429
Alw26I	GTCTC	3 cut(s)	58, 524, 530
AlwI	GGATC	3 cut(s)	243, 404, 661
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	3 cut(s)	170, 339, 784
ApeKI	GCWGC	6 cut(s)	111, 194, 305, 308, 405, 565
AspLEI	GCGC	7 cut(s)	6, 199, 374, 565, 580, 737, 763
AspS9I	GGNCC	3 cut(s)	170, 339, 784
AsuC2I	CCSGG	2 cut(s)	230, 338
AsuHPI	GGTGA	3 cut(s)	10, 475, 742
AvaI	CYCGRG	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	2 cut(s)	18, 602
Bbv12I	GWGCWC	2 cut(s)	18, 429
BbvI	GCAGC	6 cut(s)	123, 181, 292, 295, 417, 552
BccI	CCATC	1 cut(s)	796
BceAI	ACGGC	4 cut(s)	139, 265, 275, 359
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 790, 824
BciT130I	CCWGG	2 cut(s)	632, 788
BcnI	CCSGG	2 cut(s)	230, 338
BcoDI	GTCTC	3 cut(s)	58, 524, 530
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	4 cut(s)	375, 581, 738, 764
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	9 cut(s)	42, 112, 195, 306, 309, 406, 555, 566, 752
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	9 cut(s)	43, 113, 196, 307, 310, 407, 556, 567, 753
Bme1390I	CCNGG	4 cut(s)	230, 338, 632, 788
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	170, 339, 784
BmiI	GGNNCC	3 cut(s)	204, 210, 373
BmrFI	CCNGG	4 cut(s)	230, 338, 632, 788
BpmI	CTGGAG	2 cut(s)	59, 513
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	2 cut(s)	230, 338
Bsa29I	ATCGAT	1 cut(s)	656
BsaHI	GRCGYC	2 cut(s)	372, 675
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	5 cut(s)	7, 189, 228, 413, 630
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 218, 318
BseBI	CCWGG	2 cut(s)	632, 788
BseCI	ATCGAT	1 cut(s)	656
BseDI	CCNNGG	5 cut(s)	7, 189, 228, 413, 630
BseLI	CCNNNNNNNGG	3 cut(s)	167, 218, 318
BseMII	CTCAG	2 cut(s)	331, 560
BseRI	GAGGAG	2 cut(s)	848, 872
BseXI	GCAGC	6 cut(s)	123, 181, 292, 295, 417, 552
BsgI	GTGCAG	2 cut(s)	424, 443
Bsh1236I	CGCG	1 cut(s)	620
BshFI	GGCC	3 cut(s)	172, 341, 786
BshNI	GGYRCC	1 cut(s)	371
BshVI	ATCGAT	1 cut(s)	656
BsiHKAI	GWGCWC	2 cut(s)	18, 429
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	7 cut(s)	161, 200, 206, 230, 337, 369, 738
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	167, 218, 318
BsmAI	GTCTC	3 cut(s)	58, 524, 530
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	3 cut(s)	172, 341, 786
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	18, 429, 602
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	4 cut(s)	235, 255, 409, 653
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	9 cut(s)	39, 42, 555, 626, 728, 752, 770, 791, 872
BspANI	GGCC	3 cut(s)	172, 341, 786
BspCNI	CTCAG	2 cut(s)	330, 561
BspDI	ATCGAT	1 cut(s)	656
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	3 cut(s)	204, 210, 373
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	3 cut(s)	243, 404, 661
BspT107I	GGYRCC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	690
BssECI	CCNNGG	5 cut(s)	7, 189, 228, 413, 630
BssMI	GATC	4 cut(s)	235, 255, 409, 653
BssNI	GRCGYC	2 cut(s)	372, 675
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	632, 788
Bst4CI	ACNGT	2 cut(s)	250, 402
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	2 cut(s)	372, 675
BstAUI	TGTACA	1 cut(s)	690
BstC8I	GCNNGC	7 cut(s)	14, 109, 148, 152, 288, 429, 613
BstDEI	CTNAG	3 cut(s)	317, 569, 812
BstDSI	CCRYGG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	620
BstH2I	RGCGCY	4 cut(s)	375, 581, 738, 764
BstHHI	GCGC	7 cut(s)	6, 199, 374, 565, 580, 737, 763
BstKTI	GATC	4 cut(s)	238, 258, 412, 656
BstMAI	GTCTC	3 cut(s)	58, 524, 530
BstMBI	GATC	4 cut(s)	235, 255, 409, 653
BstNI	CCWGG	2 cut(s)	632, 788
BstNSI	RCATGY	1 cut(s)	615
BstSCI	CCNGG	4 cut(s)	228, 336, 630, 786
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	6 cut(s)	123, 181, 292, 295, 417, 552
BstX2I	RGATCY	2 cut(s)	235, 255
BstYI	RGATCY	2 cut(s)	235, 255
Bsu15I	ATCGAT	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	172, 341, 786
BsuTUI	ATCGAT	1 cut(s)	656
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	815
BtsI	GCAGTG	2 cut(s)	121, 455
BtsIMutI	CAGTG	2 cut(s)	121, 455
Cac8I	GCNNGC	7 cut(s)	14, 109, 148, 152, 288, 429, 613
CfoI	GCGC	7 cut(s)	6, 199, 374, 565, 580, 737, 763
Cfr13I	GGNCC	3 cut(s)	170, 339, 784
ClaI	ATCGAT	1 cut(s)	656
CseI	GACGC	3 cut(s)	250, 427, 683
Csp6I	GTAC	2 cut(s)	70, 691
CviAII	CATG	3 cut(s)	213, 612, 868
CviQI	GTAC	2 cut(s)	70, 691
DdeI	CTNAG	3 cut(s)	317, 569, 812
DinI	GGCGCC	1 cut(s)	373
DpnI	GATC	4 cut(s)	237, 257, 411, 655
DpnII	GATC	4 cut(s)	235, 255, 409, 653
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	4 cut(s)	28, 615, 785, 806
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	2 cut(s)	18, 602
Eco31I	GGTCTC	1 cut(s)	530
Eco32I	GATATC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	76, 224
Eco88I	CYCGRG	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	630, 786
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	2 cut(s)	18, 602
EgeI	GGCGCC	1 cut(s)	373
EheI	GGCGCC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	216, 615, 871
FaiI	YATR	6 cut(s)	33, 214, 500, 516, 613, 869
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	3 cut(s)	212, 611, 867
FauI	CCCGC	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	9 cut(s)	42, 112, 195, 306, 309, 406, 555, 566, 752
FriOI	GRGCYC	2 cut(s)	18, 602
Fsp4HI	GCNGC	9 cut(s)	42, 112, 195, 306, 309, 406, 555, 566, 752
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	7 cut(s)	5, 198, 373, 564, 579, 736, 762
GluI	GCNGC	9 cut(s)	42, 112, 195, 306, 309, 406, 555, 566, 752
GsuI	CTGGAG	2 cut(s)	59, 513
HaeII	RGCGCY	4 cut(s)	375, 581, 738, 764
HaeIII	GGCC	3 cut(s)	172, 341, 786
HapII	CCGG	7 cut(s)	161, 200, 206, 230, 337, 369, 738
HgaI	GACGC	3 cut(s)	250, 427, 683
HhaI	GCGC	7 cut(s)	6, 199, 374, 565, 580, 737, 763
Hin1I	GRCGYC	2 cut(s)	372, 675
Hin1II	CATG	3 cut(s)	216, 615, 871
Hin6I	GCGC	7 cut(s)	4, 197, 372, 563, 578, 735, 761
HinP1I	GCGC	7 cut(s)	4, 197, 372, 563, 578, 735, 761
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	5 cut(s)	182, 365, 464, 622, 685
HpaII	CCGG	7 cut(s)	161, 200, 206, 230, 337, 369, 738
HphI	GGTGA	3 cut(s)	10, 475, 742
Hpy166II	GTNNAC	2 cut(s)	265, 417
Hpy188I	TCNGA	3 cut(s)	61, 181, 608
Hpy188III	TCNNGA	3 cut(s)	126, 253, 523
Hpy8I	GTNNAC	2 cut(s)	265, 417
Hpy99I	CGWCG	4 cut(s)	160, 250, 266, 269
HpyAV	CCTTC	3 cut(s)	100, 790, 856
HpyCH4III	ACNGT	2 cut(s)	250, 402
HpyCH4V	TGCA	5 cut(s)	111, 136, 405, 460, 615
HpyF3I	CTNAG	3 cut(s)	317, 569, 812
Hsp92I	GRCGYC	2 cut(s)	372, 675
Hsp92II	CATG	3 cut(s)	216, 615, 871
HspAI	GCGC	7 cut(s)	4, 197, 372, 563, 578, 735, 761
KasI	GGCGCC	1 cut(s)	371
Kzo9I	GATC	4 cut(s)	235, 255, 409, 653
LmnI	GCTCC	7 cut(s)	41, 208, 424, 494, 608, 740, 772
Lsp1109I	GCAGC	6 cut(s)	123, 181, 292, 295, 417, 552
MaeI	CTAG	1 cut(s)	755
MalI	GATC	4 cut(s)	237, 257, 411, 655
MboI	GATC	4 cut(s)	235, 255, 409, 653
MboII	GAAGA	3 cut(s)	230, 343, 599
MflI	RGATCY	2 cut(s)	235, 255
MhlI	GDGCHC	3 cut(s)	18, 429, 602
MluCI	AATT	4 cut(s)	131, 387, 582, 877
Mly113I	GGCGCC	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	374, 679
MseI	TTAA	3 cut(s)	447, 644, 880
MspI	CCGG	7 cut(s)	161, 200, 206, 230, 337, 369, 738
MspR9I	CCNGG	4 cut(s)	230, 338, 632, 788
MvaI	CCWGG	2 cut(s)	632, 788
MvnI	CGCG	1 cut(s)	620
NarI	GGCGCC	1 cut(s)	372
NciI	CCSGG	2 cut(s)	230, 338
NdeII	GATC	4 cut(s)	235, 255, 409, 653
NlaIII	CATG	3 cut(s)	216, 615, 871
NlaIV	GGNNCC	3 cut(s)	204, 210, 373
NspI	RCATGY	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	182, 464, 622
PkrI	GCNGC	9 cut(s)	43, 113, 196, 307, 310, 407, 556, 567, 753
PleI	GAGTC	2 cut(s)	373, 679
PluTI	GGCGCC	1 cut(s)	375
PpsI	GAGTC	2 cut(s)	373, 679
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	630, 786
PspGI	CCWGG	2 cut(s)	630, 786
PspN4I	GGNNCC	3 cut(s)	204, 210, 373
PspPI	GGNCC	3 cut(s)	170, 339, 784
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	235, 255
RsaI	GTAC	2 cut(s)	71, 692
RsaNI	GTAC	2 cut(s)	70, 691
SacI	GAGCTC	1 cut(s)	18
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	447, 644, 880
SatI	GCNGC	9 cut(s)	42, 112, 195, 306, 309, 406, 555, 566, 752
Sau3AI	GATC	4 cut(s)	235, 255, 409, 653
Sau96I	GGNCC	3 cut(s)	170, 339, 784
SchI	GAGTC	2 cut(s)	374, 679
ScrFI	CCNGG	4 cut(s)	230, 338, 632, 788
SduI	GDGCHC	3 cut(s)	18, 429, 602
SfcI	CTRYAG	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	373
SgrDI	CGTCGACG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	615
Sse9I	AATT	4 cut(s)	131, 387, 582, 877
SsiI	CCGC	9 cut(s)	39, 42, 555, 626, 728, 752, 770, 791, 872
SspDI	GGCGCC	1 cut(s)	371
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	4 cut(s)	228, 336, 630, 786
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	250, 402
TaqI	TCGA	5 cut(s)	264, 467, 542, 656, 704
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	4 cut(s)	131, 387, 582, 877
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	3 cut(s)	44, 557, 754
TfiI	GAWTC	3 cut(s)	182, 464, 622
Tru1I	TTAA	3 cut(s)	447, 644, 880
Tru9I	TTAA	3 cut(s)	447, 644, 880
TscAI	CASTG	2 cut(s)	121, 462
TseI	GCWGC	6 cut(s)	111, 194, 305, 308, 405, 565
TspGWI	ACGGA	2 cut(s)	40, 402
TspRI	CASTG	2 cut(s)	121, 462
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.