Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028497.1

Orthogroup ID

OG0008028

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 498

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028497.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 497 bp

atgcgtctcggcgagctcgccctgcgtaccggcaacagctccggcaagtccaccgccgcgtcggccgaggagttcctccagctctcccaagccttcagcgatttctccgcctgcagcagcgatatctccggagagctacagcggctcgccagcttgccgtcgccggaaaacgccccgagatccgagttggagcccgagccggagccgtgcgagggctttttgcagagggagaatttctcgacggagataatcgagagcatttcgccggaggatcttcaaccgacggtcaagatctgtgtagacgggctccaatcgccgtcgattgccgtcaagcaatctgctgcggccaagctcaggcttttagccaaaaaccgagctgataatcgggctttgatcggcgagtcaggcgcggtgccggctttgattcctctgctccgatgcagtgacccttggactcaagaacacgccgtaacagctttgctcaacctctcgcttca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

165

Amino Acids

17.63

Weight (kDa)

4.69

Isoelectric Point (pI)

63.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16490
fragaria_vesca	FvH4_3g00770
malus_domestica	MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1
prunus_persica	Prupe.4G008500_v2.0.a1
pyrus_communis	pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300
rosa_chinensis	RchiOBHm_Chr5g0001011
rosa_laevigata	RLG00000030913
rosa_multiflora	Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075270
rosa_rugosa	Rorug04G0388900
rosa_samantha	Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700
rosa_wichuraiana	Rw5G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	2 cut(s)	59, 410
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	6 cut(s)	54, 57, 108, 142, 344, 410
AclWI	GGATC	2 cut(s)	174, 279
AcoI	YGGCCR	2 cut(s)	63, 345
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	79
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	2 cut(s)	212, 354
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	8 cut(s)	16, 39, 82, 136, 153, 352, 377, 476
AluI	AGCT	8 cut(s)	16, 39, 82, 136, 153, 352, 377, 476
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	174, 279
Ama87I	CYCGRG	2 cut(s)	175, 194
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	2 cut(s)	63, 345
ApeKI	GCWGC	3 cut(s)	114, 117, 341
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	410
AvaI	CYCGRG	2 cut(s)	175, 194
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	3 cut(s)	18, 195, 309
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	126, 129, 328
BceAI	ACGGC	5 cut(s)	142, 190, 301, 311, 452
BcoDI	GTCTC	1 cut(s)	11
BfmI	CTRYAG	2 cut(s)	112, 137
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	6 cut(s)	57, 115, 118, 143, 342, 345
BlsI	GCNGC	6 cut(s)	58, 116, 119, 144, 343, 346
BmeT110I	CYCGRG	2 cut(s)	175, 194
BmiI	GGNNCC	4 cut(s)	192, 204, 308, 414
BmsI	GCATC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	66, 449
BsaWI	WCCGGW	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 354
Bse118I	RCCGGY	2 cut(s)	29, 415
BseAI	TCCGGA	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	66, 449
BseLI	CCNNNNNNNGG	2 cut(s)	212, 354
BseMII	CTCAG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	83
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	126, 129, 328
Bsh1236I	CGCG	2 cut(s)	59, 410
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	65, 347
BshNI	GGYRCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	175, 194
BsiSI	CCGG	7 cut(s)	30, 42, 129, 164, 200, 266, 416
BslI	CCNNNNNNNGG	2 cut(s)	212, 354
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	65, 347
BsoBI	CYCGRG	2 cut(s)	175, 194
Bsp1286I	GDGCHC	3 cut(s)	18, 195, 309
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	179, 271, 291, 393
BspACI	CCGC	6 cut(s)	54, 57, 108, 142, 344, 410
BspANI	GGCC	2 cut(s)	65, 347
BspCNI	CTCAG	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	2 cut(s)	59, 410
BspLI	GGNNCC	4 cut(s)	192, 204, 308, 414
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	2 cut(s)	174, 279
BspT107I	GGYRCC	1 cut(s)	412
BsrFI	RCCGGY	2 cut(s)	29, 415
BssAI	RCCGGY	2 cut(s)	29, 415
BssECI	CCNNGG	2 cut(s)	66, 449
BssMI	GATC	4 cut(s)	179, 271, 291, 393
BssT1I	CCWWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	7 cut(s)	14, 18, 112, 147, 151, 155, 417
BstDEI	CTNAG	1 cut(s)	353
BstFNI	CGCG	2 cut(s)	59, 410
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	4 cut(s)	182, 274, 294, 396
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	4 cut(s)	179, 271, 291, 393
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 62, 142, 313, 405, 416, 473
BstSFI	CTRYAG	2 cut(s)	112, 137
BstUI	CGCG	2 cut(s)	59, 410
BstV1I	GCAGC	3 cut(s)	126, 129, 328
BstX2I	RGATCY	3 cut(s)	179, 271, 291
BstYI	RGATCY	3 cut(s)	179, 271, 291
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	65, 347
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	7 cut(s)	14, 18, 112, 147, 151, 155, 417
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	2 cut(s)	29, 415
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	27
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	4 cut(s)	181, 273, 293, 395
DpnII	GATC	4 cut(s)	179, 271, 291, 393
EaeI	YGGCCR	2 cut(s)	63, 345
EagI	CGGCCG	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	16
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	3 cut(s)	18, 195, 309
Eco32I	GATATC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	175, 194
EcoICRI	GAGCTC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	3 cut(s)	18, 195, 309
ErhI	CCWWGG	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	6 cut(s)	57, 115, 118, 143, 342, 345
FriOI	GRGCYC	3 cut(s)	18, 195, 309
Fsp4HI	GCNGC	6 cut(s)	57, 115, 118, 143, 342, 345
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	6 cut(s)	57, 115, 118, 143, 342, 345
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	65, 347
HapII	CCGG	7 cut(s)	30, 42, 129, 164, 200, 266, 416
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	3 cut(s)	401, 424, 454
HpaII	CCGG	7 cut(s)	30, 42, 129, 164, 200, 266, 416
Hpy166II	GTNNAC	2 cut(s)	51, 301
Hpy188I	TCNGA	2 cut(s)	184, 437
Hpy188III	TCNNGA	5 cut(s)	129, 238, 253, 289, 458
Hpy8I	GTNNAC	2 cut(s)	51, 301
Hpy99I	CGWCG	5 cut(s)	64, 163, 244, 286, 322
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	114, 223, 441
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 62, 142, 313, 405, 416, 473
HpyF3I	CTNAG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	408
Kpn2I	TCCGGA	1 cut(s)	128
KroI	GCCGGC	1 cut(s)	415
KroNI	GCCGGC	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	179, 271, 291, 393
LmnI	GCTCC	5 cut(s)	44, 190, 202, 312, 438
Lsp1109I	GCAGC	3 cut(s)	126, 129, 328
LweI	GCATC	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	443, 469
MalI	GATC	4 cut(s)	181, 273, 293, 395
MboI	GATC	4 cut(s)	179, 271, 291, 393
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	3 cut(s)	179, 271, 291
MhlI	GDGCHC	3 cut(s)	18, 195, 309
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	410, 448
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	61, 86, 205, 219, 262, 438, 497
MroI	TCCGGA	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	415
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	7 cut(s)	30, 42, 129, 164, 200, 266, 416
MvnI	CGCG	2 cut(s)	59, 410
MwoI	GCNNNNNNNGC	7 cut(s)	22, 62, 142, 313, 405, 416, 473
NaeI	GCCGGC	1 cut(s)	417
NdeII	GATC	4 cut(s)	179, 271, 291, 393
NgoMIV	GCCGGC	1 cut(s)	415
NlaIV	GGNNCC	4 cut(s)	192, 204, 308, 414
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	443
PdiI	GCCGGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	6 cut(s)	58, 116, 119, 144, 343, 346
PleI	GAGTC	2 cut(s)	409, 448
PpsI	GAGTC	2 cut(s)	409, 448
Psp124BI	GAGCTC	1 cut(s)	18
PspN4I	GGNNCC	4 cut(s)	192, 204, 308, 414
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	3 cut(s)	179, 271, 291
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	18
SatI	GCNGC	6 cut(s)	57, 115, 118, 143, 342, 345
Sau3AI	GATC	4 cut(s)	179, 271, 291, 393
SchI	GAGTC	2 cut(s)	410, 448
SduI	GDGCHC	3 cut(s)	18, 195, 309
SetI	ASST	9 cut(s)	18, 41, 84, 138, 155, 354, 379, 478, 489
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	2 cut(s)	112, 137
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	6 cut(s)	54, 57, 108, 142, 344, 410
SstI	GAGCTC	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	3 cut(s)	239, 252, 320
TasI	AATT	1 cut(s)	232
TauI	GCSGC	3 cut(s)	59, 145, 347
TfiI	GAWTC	1 cut(s)	424
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	114, 117, 341
Tsp45I	GTSAC	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	448
XapI	RAATTY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.