Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0008028

Physical Location & Seq

Genomic Coordinates Reverse (-)

377644 .. 378193

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g00300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCGCCTCGGCGAGCTTGCCCTCCGCACCCATAACTCCACCAGTAAGTCTGCGTCTTCCGACAAGGACAACGACATATCGGGAGAATTAAAACGGCTTGCAAGCTTGCCGTCGCCGAAAAACGCGCTGACCTCTGAATTATCTAAGGCTGCGCCAGAACTGGAGCCATGCCAGGGGTTTTTGATCTTTAGCCGATCGATCAAGATCTGCGTCTACGGCCTCCAATCGTCGTCGCTTGTCGTGAAGCAATCTGCAGCAGCCAAGCTCAGGCTTTTAGCAAAGAATCAGGTTGATAATCACGCCTTGATCGGCGAGTCTGGCACCTTTCCCGCTCTAATTCCTCTACTGCGATGCAACAATCCATGGACGCATGAGCACGCCATCACGGCGCACACCCAGTTTGCGAAATTTCAATTGGGATTTGAACAGGGGAGAAAGAAAAGGATGGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

152

Amino Acids

16.51

Weight (kDa)

9.58

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16490
fragaria_vesca	FvH4_3g00770
malus_domestica	MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1
prunus_persica	Prupe.4G008500_v2.0.a1
pyrus_communis	pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300
rosa_chinensis	RchiOBHm_Chr5g0001011
rosa_laevigata	RLG00000030913
rosa_multiflora	Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075270
rosa_rugosa	Rorug04G0388900
rosa_samantha	Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700
rosa_wichuraiana	Rw5G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	125
AciI	CCGC	2 cut(s)	25, 330
AcsI	RAATTY	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	173, 267
AgsI	TTSAA	2 cut(s)	413, 425
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	3 cut(s)	16, 105, 265
AluI	AGCT	3 cut(s)	16, 105, 265
Alw21I	GWGCWC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	149, 254, 257
ApoI	RAATTY	1 cut(s)	407
AspLEI	GCGC	4 cut(s)	6, 127, 154, 391
BanI	GGYRCC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	136, 266, 269
BccI	CCATC	2 cut(s)	389, 439
BceAI	ACGGC	4 cut(s)	94, 110, 232, 402
BciT130I	CCWGG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	3 cut(s)	150, 255, 258
BlsI	GCNGC	3 cut(s)	151, 256, 259
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	165, 322
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	341, 439
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	7, 172, 362
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 267
Bse1I	ACTGG	3 cut(s)	42, 165, 397
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	7, 172, 362
BseGI	GGATG	2 cut(s)	450, 454
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	173, 267
BseMII	CTCAG	1 cut(s)	280
BseNI	ACTGG	3 cut(s)	42, 165, 397
BseXI	GCAGC	3 cut(s)	136, 266, 269
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	320
BshVI	ATCGAT	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	173, 267
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	183, 194, 198, 204, 306
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	2 cut(s)	25, 330
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	279
BspDI	ATCGAT	1 cut(s)	197
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	165, 322
BspMAI	CTGCAG	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	42, 165, 397
BssECI	CCNNGG	3 cut(s)	7, 172, 362
BssMI	GATC	5 cut(s)	183, 194, 198, 204, 306
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	173
BstC8I	GCNNGC	6 cut(s)	14, 18, 99, 103, 107, 378
BstDEI	CTNAG	2 cut(s)	144, 266
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	450, 454
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	4 cut(s)	6, 127, 154, 391
BstKTI	GATC	5 cut(s)	186, 197, 201, 207, 309
BstMBI	GATC	5 cut(s)	183, 194, 198, 204, 306
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 318, 386
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	136, 266, 269
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	362
BtgZI	GCGATG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	450, 454
Cac8I	GCNNGC	6 cut(s)	14, 18, 99, 103, 107, 378
CfoI	GCGC	4 cut(s)	6, 127, 154, 391
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	3 cut(s)	42, 199, 376
CviAII	CATG	4 cut(s)	168, 363, 371, 453
DdeI	CTNAG	2 cut(s)	144, 266
DpnI	GATC	5 cut(s)	185, 196, 200, 206, 308
DpnII	GATC	5 cut(s)	183, 194, 198, 204, 306
Eco130I	CCWWGG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	4 cut(s)	171, 366, 374, 456
FaiI	YATR	6 cut(s)	33, 77, 169, 364, 372, 454
FatI	CATG	4 cut(s)	167, 362, 370, 452
FauI	CCCGC	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	150, 255, 258
Fsp4HI	GCNGC	3 cut(s)	150, 255, 258
GlaI	GCGC	4 cut(s)	5, 126, 153, 390
GluI	GCNGC	3 cut(s)	150, 255, 258
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	219
HgaI	GACGC	3 cut(s)	42, 199, 376
HhaI	GCGC	4 cut(s)	6, 127, 154, 391
Hin1II	CATG	4 cut(s)	171, 366, 374, 456
Hin6I	GCGC	4 cut(s)	4, 125, 152, 389
HinP1I	GCGC	4 cut(s)	4, 125, 152, 389
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	2 cut(s)	283, 314
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	61, 136
Hpy188III	TCNNGA	3 cut(s)	81, 202, 241
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	115, 232, 235
HpyCH4V	TGCA	4 cut(s)	101, 254, 354, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 318, 386
HpyF3I	CTNAG	2 cut(s)	144, 266
Hsp92II	CATG	4 cut(s)	171, 366, 374, 456
HspAI	GCGC	4 cut(s)	4, 125, 152, 389
Kzo9I	GATC	5 cut(s)	183, 194, 198, 204, 306
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	136, 266, 269
LweI	GCATC	2 cut(s)	341, 439
MalI	GATC	5 cut(s)	185, 196, 200, 206, 308
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	5 cut(s)	183, 194, 198, 204, 306
MboII	GAAGA	1 cut(s)	48
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	5 cut(s)	86, 137, 336, 407, 413
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	5 cut(s)	17, 32, 142, 230, 351
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	216, 318, 386
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	5 cut(s)	183, 194, 198, 204, 306
NlaIII	CATG	4 cut(s)	171, 366, 374, 456
NlaIV	GGNNCC	2 cut(s)	165, 322
NsiI	ATGCAT	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	151, 256, 259
Ple19I	CGATCG	1 cut(s)	197
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	165, 322
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	204
PvuI	CGATCG	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	3 cut(s)	150, 255, 258
Sau3AI	GATC	5 cut(s)	183, 194, 198, 204, 306
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	6 cut(s)	18, 107, 134, 267, 291, 326
SfaNI	GCATC	2 cut(s)	341, 439
SfcI	CTRYAG	1 cut(s)	252
Sse9I	AATT	5 cut(s)	86, 137, 336, 407, 413
SsiI	CCGC	2 cut(s)	25, 330
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	362
TaqI	TCGA	1 cut(s)	197
TasI	AATT	5 cut(s)	86, 137, 336, 407, 413
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	3 cut(s)	149, 254, 257
XapI	RAATTY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.