Rroxscaffold_1G00075270

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
96080926 .. 96084244
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075270.1

Sequence Viewer

Length: 1275 bp
ATGTGGATGGTTTCTCTAGAAGATTCTCATTCCGGTTCGAACCATTTCCCTCCTATCACCCGAAACTTCTACTCTCCGGCGTCCACCAAGCTTCACCGGAACACCGGCCGATTCCGTTATGGACATGCGTCTCGGCGAGCTGGCCCTGCGCACCGGCAACAGCTCCGGCAAGTCCACCGCCGCGTCGGCCGAGGAGTTCCTCCAGCTTTCCCAAGCCTTCAGCGATTTCTCCGCCTGCAGCAGCGATATCTCCGGAGAGCTACAGCGGCTCGCCAGTTTGCCGTCGCCGGAAAACGCGCCGAGATCCGAGTTGGAGCCGGAGCCGGAGCCGGAGCCGTGCGAGGGGTTTTTAGAGAGGAGAATTTCTCGACGGAGATAATCGAGAGCATTTCGCCGGAGGATCTTCAACCGACGGTCAAGATCTGTGTAGACGGGCTCCAATCGCCGTCGATTGCCGTGAAGCAATCTGCTGCGGCCAAGCTCAGGCTTTTAGCTAAGAACCGAGCTGATAATCGGGCTTTGATCGGCGAGTCAGGCGCGGTGCCGGCTTTGATTCCTCTGCTTCGGTGCAGTGACCCTTGGACTCAAGAACACGCCGTAACAGCTTTGCTCAACCTGTCGCTTCACGAATCAAACAAGGCTATAATCACCAATGCCGGAGCTATAAAGTCCTTGGTGTATGTACTCAAGACCGGGACGGAGACCTCTAAGCAAAACGCCGCCTGTGCGCTTCTGAGCTTGGCTTTAATGGAAGAGAACAAGAGCTCAATCGGAGCTTGCGGAGCCATTCCTCCTCTGGTTTCGTTGTTAATAAGTGGATCCATGAGGGGGAAGAAAGATGCTTTGACGACCCTGTACAAGCTCTGCTCAATTAGGCCTAATAAAGAGAGGGCGGTGAGTGCCGGAGCGGTGAAGCCGTTGGTGGCGCTTGTGGCGGACCAGGCGACTGGCTTGGCGGAGAAGGCGATGGTGGTGCTGAGTAGCTTGGCGGGAATCGAGGAGGGGAAGGAGGCCATTGTGGAGGAAGGTGGGCTTGCAGCACTTGTGGAAGTGATTGAGGATGGTTCAGTCAAAGGGAAGGAATTTGCGGTTTTGACGCTGCTGCAGCTGTGTACTGAGAGTGTGAGGAATAGAGGGTTGCTAGTCAGAGAAGGAGGGATTCCACCTTTGGTTGCGCTTTCGCAGACTGGGACTGTTAGAGCAAAGCACAAGGCCGAAACGCTTCTTGGGTATCTGAGAGAGCCGAGACAAGAAGCGTCCTCTTCAACTCCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

45.4

Weight (kDa)

9.96

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 156 - 412 1.3e-23 Plant U-box protein ARM repeat region
Arm PF00514 170 - 207 7.1e-08 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 202 - 400 9.4e-17 ARMC5
Arm PF00514 252 - 290 5.4e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 429
AccII CGCG 3 cut(s) 183, 297, 539
AccIII TCCGGA 1 cut(s) 252
AclWI GGATC 4 cut(s) 298, 408, 813, 826
AcoI YGGCCR 3 cut(s) 106, 187, 474
AcsI RAATTY 2 cut(s) 361, 1082
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 3 cut(s) 684, 857, 1114
AfiI CCNNNNNNNGG 3 cut(s) 342, 483, 828
AgsI TTSAA 2 cut(s) 407, 1266
AjnI CCWGG 1 cut(s) 939
AjuI GAANNNNNNNTTGG 2 cut(s) 1209, 1241
Alw21I GWGCWC 1 cut(s) 767
Alw26I GTCTC 3 cut(s) 135, 695, 1240
AlwI GGATC 4 cut(s) 298, 408, 813, 826
Aor13HI TCCGGA 1 cut(s) 252
AoxI GGCC 7 cut(s) 106, 142, 187, 474, 875, 1011, 1212
ApeKI GCWGC 7 cut(s) 238, 241, 470, 1037, 1099, 1102, 1105
ApoI RAATTY 2 cut(s) 361, 1082
Asp700I GAANNNNTTC 2 cut(s) 44, 1221
AspLEI GCGC 6 cut(s) 151, 299, 539, 730, 928, 1177
AspS9I GGNCC 2 cut(s) 143, 937
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 5 cut(s) 49, 86, 640, 907, 922
AsuII TTCGAA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 937
BamHI GGATCC 1 cut(s) 818
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 2 cut(s) 438, 767
Bbv12I GWGCWC 1 cut(s) 767
BbvI GCAGC 7 cut(s) 250, 253, 457, 1049, 1086, 1089, 1117
BccI CCATC 2 cut(s) 961, 1055
BceAI ACGGC 6 cut(s) 266, 320, 430, 440, 581, 901
BcgI CGANNNNNNTGC 2 cut(s) 955, 989
BciT130I CCWGG 1 cut(s) 941
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 135, 695, 1240
BfaI CTAG 2 cut(s) 17, 1142
BfmI CTRYAG 3 cut(s) 236, 261, 1103
BfoI RGCGCY 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 186
BglII AGATCT 1 cut(s) 420
Bme1390I CCNGG 2 cut(s) 694, 941
Bme18I GGWCC 1 cut(s) 937
BmgT120I GGNCC 2 cut(s) 143, 937
BmiI GGNNCC 8 cut(s) 316, 322, 328, 334, 437, 543, 784, 820
BmrFI CCNGG 2 cut(s) 694, 941
BmrI ACTGGG 1 cut(s) 1197
BmsI GCATC 1 cut(s) 829
BmuI ACTGGG 1 cut(s) 1197
BoxI GACNNNNGTC 1 cut(s) 127
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 570, 671
BpuMI CCSGG 1 cut(s) 694
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 3 cut(s) 190, 578, 672
BsaWI WCCGGW 3 cut(s) 32, 96, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 483, 828
Bse118I RCCGGY 3 cut(s) 104, 153, 544
Bse1I ACTGG 3 cut(s) 274, 952, 1192
BseAI TCCGGA 1 cut(s) 252
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 3 cut(s) 190, 578, 672
BseGI GGATG 2 cut(s) 12, 1066
BseLI CCNNNNNNNGG 3 cut(s) 342, 483, 828
BseMII CTCAG 5 cut(s) 496, 725, 968, 1107, 1226
BseNI ACTGG 3 cut(s) 274, 952, 1192
BseRI GAGGAG 4 cut(s) 207, 371, 783, 1013
BseX3I CGGCCG 2 cut(s) 106, 187
BseXI GCAGC 7 cut(s) 250, 253, 457, 1049, 1086, 1089, 1117
BsgI GTGCAG 1 cut(s) 589
Bsh1236I CGCG 3 cut(s) 183, 297, 539
Bsh1285I CGRYCG 2 cut(s) 109, 190
BshFI GGCC 7 cut(s) 108, 144, 189, 476, 877, 1013, 1214
BshNI GGYRCC 1 cut(s) 541
BsiEI CGRYCG 2 cut(s) 109, 190
BsiHKAI GWGCWC 1 cut(s) 767
BslFI GGGAC 2 cut(s) 709, 1204
BslI CCNNNNNNNGG 3 cut(s) 342, 483, 828
BsmAI GTCTC 3 cut(s) 135, 695, 1240
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 709, 1204
BsnI GGCC 7 cut(s) 108, 144, 189, 476, 877, 1013, 1214
Bso31I GGTCTC 1 cut(s) 695
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 438, 767
Bsp13I TCCGGA 1 cut(s) 252
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 5 cut(s) 303, 400, 420, 522, 818
BspANI GGCC 7 cut(s) 108, 144, 189, 476, 877, 1013, 1214
BspCNI CTCAG 5 cut(s) 495, 726, 969, 1108, 1227
BspEI TCCGGA 1 cut(s) 252
BspFNI CGCG 3 cut(s) 183, 297, 539
BspLI GGNNCC 8 cut(s) 316, 322, 328, 334, 437, 543, 784, 820
BspMAI CTGCAG 2 cut(s) 240, 1107
BspPI GGATC 4 cut(s) 298, 408, 813, 826
BspT104I TTCGAA 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 695
BsrBI CCGCTC 1 cut(s) 908
BsrFI RCCGGY 3 cut(s) 104, 153, 544
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 3 cut(s) 274, 952, 1192
BssAI RCCGGY 3 cut(s) 104, 153, 544
BssECI CCNNGG 3 cut(s) 190, 578, 672
BssMI GATC 5 cut(s) 303, 400, 420, 522, 818
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 2 cut(s) 578, 672
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 2 cut(s) 415, 1195
Bst6I CTCTTC 2 cut(s) 747, 1267
BstACI GRCGYC 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 855
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 7 cut(s) 138, 142, 236, 271, 546, 778, 1035
BstDEI CTNAG 7 cut(s) 482, 495, 708, 734, 977, 1116, 1235
BstF5I GGATG 2 cut(s) 12, 1066
BstFNI CGCG 3 cut(s) 183, 297, 539
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 6 cut(s) 151, 299, 539, 730, 928, 1177
BstKTI GATC 5 cut(s) 306, 403, 423, 525, 821
BstMAI GTCTC 3 cut(s) 135, 695, 1240
BstMBI GATC 5 cut(s) 303, 400, 420, 522, 818
BstMCI CGRYCG 2 cut(s) 109, 190
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 692, 939
BstSFI CTRYAG 3 cut(s) 236, 261, 1103
BstUI CGCG 3 cut(s) 183, 297, 539
BstV1I GCAGC 7 cut(s) 250, 253, 457, 1049, 1086, 1089, 1117
BstX2I RGATCY 4 cut(s) 303, 400, 420, 818
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 4 cut(s) 303, 400, 420, 818
BstZI CGGCCG 2 cut(s) 106, 187
BsuRI GGCC 7 cut(s) 108, 144, 189, 476, 877, 1013, 1214
BtgZI GCGATG 1 cut(s) 980
BtsCI GGATG 2 cut(s) 12, 1066
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 7 cut(s) 138, 142, 236, 271, 546, 778, 1035
CfoI GCGC 6 cut(s) 151, 299, 539, 730, 928, 1177
Cfr10I RCCGGY 3 cut(s) 104, 153, 544
Cfr13I GGNCC 2 cut(s) 143, 937
CseI GACGC 5 cut(s) 69, 117, 172, 1105, 1245
Csp6I GTAC 3 cut(s) 683, 856, 1113
CviAII CATG 2 cut(s) 125, 823
CviQI GTAC 3 cut(s) 683, 856, 1113
DdeI CTNAG 7 cut(s) 482, 495, 708, 734, 977, 1116, 1235
DpnI GATC 5 cut(s) 305, 402, 422, 524, 820
DpnII GATC 5 cut(s) 303, 400, 420, 522, 818
EaeI YGGCCR 3 cut(s) 106, 187, 474
EagI CGGCCG 2 cut(s) 106, 187
Eam1104I CTCTTC 2 cut(s) 747, 1267
EarI CTCTTC 2 cut(s) 747, 1267
EciI GGCGGA 3 cut(s) 221, 950, 971
Ecl136II GAGCTC 1 cut(s) 765
EclXI CGGCCG 2 cut(s) 106, 187
Eco130I CCWWGG 2 cut(s) 578, 672
Eco147I AGGCCT 1 cut(s) 877
Eco24I GRGCYC 2 cut(s) 438, 767
Eco31I GGTCTC 1 cut(s) 695
Eco32I GATATC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 937
Eco52I CGGCCG 2 cut(s) 106, 187
Eco53kI GAGCTC 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 765
EcoRII CCWGG 1 cut(s) 939
EcoRV GATATC 1 cut(s) 248
EcoT14I CCWWGG 2 cut(s) 578, 672
EcoT38I GRGCYC 2 cut(s) 438, 767
ErhI CCWWGG 2 cut(s) 578, 672
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 2 cut(s) 128, 826
FaiI YATR 6 cut(s) 120, 126, 644, 665, 681, 824
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 2 cut(s) 709, 1204
FatI CATG 2 cut(s) 124, 822
FauI CCCGC 1 cut(s) 982
FblI GTMKAC 1 cut(s) 429
FokI GGATG 2 cut(s) 19, 1073
FriOI GRGCYC 2 cut(s) 438, 767
FspBI CTAG 2 cut(s) 17, 1142
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 6 cut(s) 150, 298, 538, 729, 927, 1176
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 7 cut(s) 108, 144, 189, 476, 877, 1013, 1214
HgaI GACGC 5 cut(s) 69, 117, 172, 1105, 1245
HhaI GCGC 6 cut(s) 151, 299, 539, 730, 928, 1177
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 128, 826
Hin6I GCGC 6 cut(s) 149, 297, 537, 728, 926, 1175
HinP1I GCGC 6 cut(s) 149, 297, 537, 728, 926, 1175
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 8 cut(s) 23, 111, 530, 553, 583, 629, 993, 1159
HphI GGTGA 5 cut(s) 49, 86, 640, 907, 922
Hpy166II GTNNAC 4 cut(s) 84, 175, 430, 1113
Hpy188I TCNGA 5 cut(s) 308, 735, 773, 1148, 1236
Hpy188III TCNNGA 8 cut(s) 17, 253, 367, 382, 418, 587, 626, 688
Hpy8I GTNNAC 4 cut(s) 84, 175, 430, 1113
Hpy99I CGWCG 5 cut(s) 188, 287, 373, 415, 451
HpyAV CCTTC 6 cut(s) 227, 955, 1000, 1019, 1072, 1145
HpyCH4III ACNGT 2 cut(s) 415, 1195
HpyCH4V TGCA 4 cut(s) 238, 570, 1037, 1105
HpyF3I CTNAG 7 cut(s) 482, 495, 708, 734, 977, 1116, 1235
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 128, 826
HspAI GCGC 6 cut(s) 149, 297, 537, 728, 926, 1175
Kpn2I TCCGGA 1 cut(s) 252
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 5 cut(s) 303, 400, 420, 522, 818
Lsp1109I GCAGC 7 cut(s) 250, 253, 457, 1049, 1086, 1089, 1117
LweI GCATC 1 cut(s) 829
MaeI CTAG 2 cut(s) 17, 1142
MaeIII GTNAC 2 cut(s) 572, 598
MalI GATC 5 cut(s) 305, 402, 422, 524, 820
MbiI CCGCTC 1 cut(s) 908
MboI GATC 5 cut(s) 303, 400, 420, 522, 818
MboII GAAGA 5 cut(s) 32, 395, 764, 844, 1254
MflI RGATCY 4 cut(s) 303, 400, 420, 818
MhlI GDGCHC 2 cut(s) 438, 767
MluCI AATT 3 cut(s) 361, 870, 1082
MlyI GAGTC 2 cut(s) 539, 577
MmeI TCCRAC 1 cut(s) 292
MroI TCCGGA 1 cut(s) 252
MroNI GCCGGC 1 cut(s) 544
MroXI GAANNNNTTC 2 cut(s) 44, 1221
MseI TTAA 3 cut(s) 746, 809, 1273
MspA1I CMGCKG 2 cut(s) 266, 1108
MspR9I CCNGG 2 cut(s) 694, 941
MvaI CCWGG 1 cut(s) 941
MvnI CGCG 3 cut(s) 183, 297, 539
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 694
NdeII GATC 5 cut(s) 303, 400, 420, 522, 818
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 2 cut(s) 128, 826
NlaIV GGNNCC 8 cut(s) 316, 322, 328, 334, 437, 543, 784, 820
NmeAIII GCCGAG 4 cut(s) 112, 215, 325, 1269
NmuCI GTSAC 1 cut(s) 572
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 1 cut(s) 128
NspV TTCGAA 1 cut(s) 38
PceI AGGCCT 1 cut(s) 877
PdiI GCCGGC 1 cut(s) 546
PdmI GAANNNNTTC 2 cut(s) 44, 1221
PfeI GAWTC 6 cut(s) 23, 111, 553, 629, 993, 1159
PleI GAGTC 2 cut(s) 538, 577
PpsI GAGTC 2 cut(s) 538, 577
PshAI GACNNNNGTC 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 8 cut(s) 316, 322, 328, 334, 437, 543, 784, 820
PspPI GGNCC 2 cut(s) 143, 937
PstI CTGCAG 2 cut(s) 240, 1107
PsuI RGATCY 4 cut(s) 303, 400, 420, 818
PvuII CAGCTG 1 cut(s) 1108
RsaI GTAC 3 cut(s) 684, 857, 1114
RsaNI GTAC 3 cut(s) 683, 856, 1113
SacI GAGCTC 1 cut(s) 767
SaqAI TTAA 3 cut(s) 746, 809, 1273
Sau3AI GATC 5 cut(s) 303, 400, 420, 522, 818
Sau96I GGNCC 2 cut(s) 143, 937
SchI GAGTC 2 cut(s) 539, 577
ScrFI CCNGG 2 cut(s) 694, 941
SduI GDGCHC 2 cut(s) 438, 767
SfaNI GCATC 1 cut(s) 829
SfcI CTRYAG 3 cut(s) 236, 261, 1103
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 937
SmlI CTYRAG 2 cut(s) 585, 686
SmoI CTYRAG 2 cut(s) 585, 686
Sse9I AATT 3 cut(s) 361, 870, 1082
SseBI AGGCCT 1 cut(s) 877
SspMI CTAG 2 cut(s) 17, 1142
SstI GAGCTC 1 cut(s) 767
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 2 cut(s) 692, 939
StyI CCWWGG 2 cut(s) 578, 672
TaaI ACNGT 2 cut(s) 415, 1195
TaqI TCGA 5 cut(s) 38, 368, 381, 449, 996
TasI AATT 3 cut(s) 361, 870, 1082
TatI WGTACW 3 cut(s) 682, 855, 1112
TauI GCSGC 4 cut(s) 183, 269, 476, 722
TfiI GAWTC 6 cut(s) 23, 111, 553, 629, 993, 1159
Tru1I TTAA 3 cut(s) 746, 809, 1273
Tru9I TTAA 3 cut(s) 746, 809, 1273
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 7 cut(s) 238, 241, 470, 1037, 1099, 1102, 1105
Tsp45I GTSAC 1 cut(s) 572
TspGWI ACGGA 3 cut(s) 104, 386, 713
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 937
XapI RAATTY 2 cut(s) 361, 1082
XbaI TCTAGA 1 cut(s) 16
XceI RCATGY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 2 cut(s) 44, 1221
XspI CTAG 2 cut(s) 17, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.