Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233557.1

Orthogroup ID

OG0008028

Physical Location & Seq

Genomic Coordinates Reverse (-)

62 .. 748

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233557.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ctgctccgatgcagtgacccttggactcaagaacacgccgtaacagctttgctcaacctctcgcttcacgaatcaaacaaggctataatcaccaatgccggagctataaagtccttagtgtatgtactcaagaccgggacggagacctctaagcaaaacgccgcctgtgcgcttctgagcttggctttgatggaggagaacaagagctcaatcggagcttgcggagcgattcctcctctggtttcgttgttaataagtggatccatgagggggaagaaagatgctttgacgactctgtacaagctctgctcaattaggcctaataaagagagggcggtgagtgccggggcggtgaagccgttggtggcgcttgtggcggaccaggcgactggcttggcggagaaggcgatggtggtgctgagtagcttggcgggaatcgaggaggggaaggaggccattgtggaggaaggtgggcttgcagcacttgtggaagtgattgaggatggttcagtcaaagggaaggaatttgcggttttgacgctgttgcagctgtgtactgagagtgtgaggaatagagggttgctagtcagagaaggagggattccacctttggttgcgctttcgcagactgggactgttagagctaagcacaaggtattttcagctgtgaattggttacttgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

228

Amino Acids

23.86

Weight (kDa)

8.59

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16490
fragaria_vesca	FvH4_3g00770
malus_domestica	MD05G1359600.v1.1 MD07G1107900.v1.1 MD10G1335100.v1.1 MD11G1170200.v1.1
prunus_persica	Prupe.4G008500_v2.0.a1
pyrus_communis	pycom05g32470 pycom07g23150 pycom10g28490 pycom420g00300
rosa_chinensis	RchiOBHm_Chr5g0001011
rosa_laevigata	RLG00000030913
rosa_multiflora	Rmu_co8233557.1_g000001 Rmu_sc0000255.1_g000025 Rmu_sc0028496.1_g000001 Rmu_sc0028497.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075270
rosa_rugosa	Rorug04G0388900
rosa_samantha	Rh5AG008000 Rh5BG010200 Rh5CG008700 Rh5DG008700
rosa_wichuraiana	Rw5G000830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	162, 222, 335, 350, 377, 398, 431, 530
AclWI	GGATC	2 cut(s)	255, 268
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	3 cut(s)	126, 299, 556
AfiI	CCNNNNNNNGG	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	381
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	2 cut(s)	255, 268
AoxI	GGCC	2 cut(s)	317, 453
ApeKI	GCWGC	2 cut(s)	479, 547
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	3 cut(s)	172, 370, 619
AspS9I	GGNCC	1 cut(s)	379
AsuC2I	CCSGG	2 cut(s)	136, 346
AsuHPI	GGTGA	3 cut(s)	82, 349, 364
AvaII	GGWCC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	491, 559
BccI	CCATC	3 cut(s)	184, 403, 497
BceAI	ACGGC	2 cut(s)	23, 343
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	2 cut(s)	136, 346
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	584
BfoI	RGCGCY	1 cut(s)	371
BisI	GCNGC	3 cut(s)	162, 480, 548
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	3 cut(s)	163, 481, 549
Bme1390I	CCNGG	3 cut(s)	136, 346, 383
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	3 cut(s)	136, 346, 383
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	12, 113
BpuMI	CCSGG	2 cut(s)	136, 346
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	20, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	394, 634
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	20, 345
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	167, 410, 549
BseNI	ACTGG	2 cut(s)	394, 634
BseRI	GAGGAG	3 cut(s)	209, 225, 455
BseXI	GCAGC	2 cut(s)	491, 559
BshFI	GGCC	2 cut(s)	319, 455
BsiHKAI	GWGCWC	1 cut(s)	209
BsiSI	CCGG	3 cut(s)	99, 135, 345
BslFI	GGGAC	2 cut(s)	151, 646
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	151, 646
BsnI	GGCC	2 cut(s)	319, 455
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	260
Bsp1720I	GCTNAGC	1 cut(s)	645
BspACI	CCGC	8 cut(s)	162, 222, 335, 350, 377, 398, 431, 530
BspANI	GGCC	2 cut(s)	319, 455
BspCNI	CTCAG	3 cut(s)	168, 411, 550
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	255, 268
BspTNI	GGTCTC	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	394, 634
BssECI	CCNNGG	2 cut(s)	20, 345
BssMI	GATC	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	637
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	220, 477
BstDEI	CTNAG	6 cut(s)	115, 150, 176, 419, 558, 645
BstF5I	GGATG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	3 cut(s)	172, 370, 619
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 167, 224, 341, 374, 383, 404, 547
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	3 cut(s)	134, 344, 381
BstV1I	GCAGC	2 cut(s)	491, 559
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	319, 455
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	220, 477
CfoI	GCGC	3 cut(s)	172, 370, 619
Cfr13I	GGNCC	1 cut(s)	379
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	125, 298, 555
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	3 cut(s)	125, 298, 555
DdeI	CTNAG	6 cut(s)	115, 150, 176, 419, 558, 645
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	392, 413
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	268
FaiI	YATR	4 cut(s)	86, 107, 123, 266
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	2 cut(s)	151, 646
FatI	CATG	1 cut(s)	264
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	162, 480, 548
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	162, 480, 548
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	3 cut(s)	171, 369, 618
GluI	GCNGC	3 cut(s)	162, 480, 548
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	319, 455
HapII	CCGG	3 cut(s)	99, 135, 345
HgaI	GACGC	1 cut(s)	547
HhaI	GCGC	3 cut(s)	172, 370, 619
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	3 cut(s)	170, 368, 617
HinP1I	GCGC	3 cut(s)	170, 368, 617
HinfI	GANTC	6 cut(s)	25, 71, 229, 292, 435, 601
HpaII	CCGG	3 cut(s)	99, 135, 345
HphI	GGTGA	3 cut(s)	82, 349, 364
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	4 cut(s)	8, 177, 215, 590
Hpy188III	TCNNGA	3 cut(s)	29, 68, 130
Hpy8I	GTNNAC	1 cut(s)	555
HpyAV	CCTTC	5 cut(s)	397, 442, 461, 514, 587
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	12, 479, 547
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 167, 224, 341, 374, 383, 404, 547
HpyF3I	CTNAG	6 cut(s)	115, 150, 176, 419, 558, 645
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	3 cut(s)	170, 368, 617
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	4 cut(s)	9, 101, 215, 224
LpnPI	CCDG	9 cut(s)	112, 148, 178, 224, 358, 368, 375, 395, 615
Lsp1109I	GCAGC	2 cut(s)	491, 559
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	584
MaeIII	GTNAC	3 cut(s)	14, 40, 675
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	3 cut(s)	312, 524, 670
MlyI	GAGTC	2 cut(s)	19, 286
MseI	TTAA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	550, 665
MspI	CCGG	3 cut(s)	99, 135, 345
MspR9I	CCNGG	3 cut(s)	136, 346, 383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	8 cut(s)	44, 167, 224, 341, 374, 383, 404, 547
NciI	CCSGG	2 cut(s)	136, 346
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	319
PfeI	GAWTC	4 cut(s)	71, 229, 435, 601
PkrI	GCNGC	3 cut(s)	163, 481, 549
PleI	GAGTC	2 cut(s)	19, 286
PpsI	GAGTC	2 cut(s)	19, 286
Psp124BI	GAGCTC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	550, 665
RsaI	GTAC	3 cut(s)	126, 299, 556
RsaNI	GTAC	3 cut(s)	125, 298, 555
SacI	GAGCTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	162, 480, 548
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	1 cut(s)	379
SchI	GAGTC	2 cut(s)	19, 286
ScrFI	CCNGG	3 cut(s)	136, 346, 383
SduI	GDGCHC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	27, 128
SmoI	CTYRAG	2 cut(s)	27, 128
Sse9I	AATT	3 cut(s)	312, 524, 670
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	8 cut(s)	162, 222, 335, 350, 377, 398, 431, 530
SspMI	CTAG	1 cut(s)	584
SstI	GAGCTC	1 cut(s)	209
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	134, 344, 381
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	637
TaqI	TCGA	1 cut(s)	438
TasI	AATT	3 cut(s)	312, 524, 670
TatI	WGTACW	3 cut(s)	124, 297, 554
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	71, 229, 435, 601
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	479, 547
Tsp45I	GTSAC	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	524
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.