FvH4_3g00770

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008028
Physical Location & Seq
Reverse (-)
379344 .. 382331
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00770.t1

Sequence Viewer

Length: 1353 bp
ATGATGGTTTCTCTGGAAGATTCTCATTCCGGGTCGAACCATTTCCCTCTGACCCGGAACTTCTACTCTCCGTCGTCTACCAGGATTCACCGGAACACCGGCCGGTCCATGCGGACAATCCGGTCGAATTTCTACCAGGAGGATCAGAGCTGCTGCTCCTTCGCCGAGAGATCGCCGTTCGTGTCTGAGAATCTGACCGATTCCGTTGTGGACATGCGTCTCGGCGAGCTGGCCCTGCGCACCTCCACCAGCTCCGGCAAGTCCACCGCCGCGTCCGCCGAGGAGTTCCTCCAGCTCTCCCAAGCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGAGAACTGCAGCGGCTCGCCTGCTTGCCGTCGCCGGAAAACGCGCCGAGATCGGAGTCGGAGCCGGAACCGTGCGAGGGGTTTTTACAGAGGGAGAATTTCTCCACTGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAACCGACGGTCAAGATCTGTGTGGACGGGCTTCATTCACCGTCGATTGCCGTCAAGCAATCCGCTGCGGCCAAGCTGAGGCTTCTGGCTAAGAACCGAGCTGATAATCGGGCTTTGATCGGCGAGTCAGGTGCGGTGCCTGCTCTGATTCCTCTGCTCCGGTGCAGTGATCCTTGGACTCAAGAACACGCTGTAACTGCTTTGCTCAACCTATCGCTTCACGAATCAAACAAGGCTATAATCACCAATGCCGGAGCTATAAAGTCGTTAGTGTATGTACTCAAGACCGGAACGGAGACCTCTAAGCAAAACGCAGCTTGTGCTCTTCTGAGCTTGGCGTTAATGGAGGAGAACAAGAGCTCAATCGGAGCTTGCGGAGCTATTCCTCCTTTGGTTTCGCTGTTGATAAGTGGATCCATGAGAGGAAAGAAAGATGCTTTGACGACTCTGTACAAGCTCTGCTCGATCAGGCCTAATAAAGAGAGGGCAGTGAGTGCCGGAGCGGTGAAGCCTTTGGTGGCGCTTGTGGCGGACCAGGCGACTGGCTTGGCGGAGAAGGCGATGGTGGTGCTGAGTAGCTTGGCTGGAATCGAGGAGGGGAAGGAGGCTGTTGTTGAGGAAGGTGGGCTTGCAGCACTTGTGGAAGTGATTGAAGATGGTTCAGTGAAAGGGAAGGAATTTGCGGTTCTGACGCTGTTGCAGCTGTGTACTGAGAGTGTGAGGAATAGAGGGTTGCTAGTCAGAGAAGGAGGGATTCCGCCTTTGGTTGCGCTTTCGCAGTCTGGGACTGTTAGAGCTAAGCACAAGGCTGAAACGCTTCTTGGGTATCTGAGAGAGCCGAGGCAAGAAGCGTCCTCTTCAAGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

451

Amino Acids

47.98

Weight (kDa)

5.93

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 182 - 438 4.1e-24 Plant U-box protein ARM repeat region
Arm PF00514 196 - 233 7.6e-08 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 228 - 428 1e-16 ARMC5
Arm PF00514 278 - 316 5.8e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 121
Acc16I TGCGCA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 619
AccBSI CCGCTC 1 cut(s) 986
AccI GTMKAC 1 cut(s) 77
AccII CGCG 2 cut(s) 272, 386
AccIII TCCGGA 1 cut(s) 341
AclWI GGATC 5 cut(s) 150, 486, 647, 891, 904
AcoI YGGCCR 2 cut(s) 100, 552
AcsI RAATTY 3 cut(s) 127, 439, 1160
AcuI CTGAAG 1 cut(s) 292
AfaI GTAC 3 cut(s) 762, 935, 1192
AfiI CCNNNNNNNGG 3 cut(s) 419, 490, 561
AgsI TTSAA 2 cut(s) 1136, 1344
AjnI CCWGG 3 cut(s) 80, 135, 1017
AjuI GAANNNNNNNTTGG 2 cut(s) 1287, 1319
Alw21I GWGCWC 2 cut(s) 808, 845
Alw26I GTCTC 2 cut(s) 224, 773
AlwI GGATC 5 cut(s) 150, 486, 647, 891, 904
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 4 cut(s) 100, 231, 552, 953
ApeKI GCWGC 9 cut(s) 150, 153, 327, 330, 352, 548, 797, 1115, 1183
ApoI RAATTY 3 cut(s) 127, 439, 1160
Asp700I GAANNNNTTC 2 cut(s) 41, 1299
AspLEI GCGC 4 cut(s) 240, 388, 1006, 1255
AspS9I GGNCC 3 cut(s) 105, 232, 1015
AsuC2I CCSGG 2 cut(s) 31, 55
AsuHPI GGTGA 4 cut(s) 80, 513, 718, 1000
AvaII GGWCC 2 cut(s) 105, 1015
BamHI GGATCC 1 cut(s) 896
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 845
Bbv12I GWGCWC 2 cut(s) 808, 845
BbvCI CCTCAGC 1 cut(s) 560
BbvI GCAGC 9 cut(s) 137, 140, 339, 342, 364, 535, 809, 1127, 1195
BccI CCATC 2 cut(s) 1039, 1133
BceAI ACGGC 3 cut(s) 160, 355, 518
BcgI CGANNNNNNTGC 4 cut(s) 596, 630, 1033, 1067
BciT130I CCWGG 3 cut(s) 82, 137, 1019
BcnI CCSGG 2 cut(s) 31, 55
BcoDI GTCTC 2 cut(s) 224, 773
BfaI CTAG 1 cut(s) 1220
BfmI CTRYAG 2 cut(s) 325, 350
BfoI RGCGCY 1 cut(s) 1007
BglII AGATCT 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 1281
Bme1390I CCNGG 5 cut(s) 31, 55, 82, 137, 1019
Bme18I GGWCC 2 cut(s) 105, 1015
BmgT120I GGNCC 3 cut(s) 105, 232, 1015
BmiI GGNNCC 4 cut(s) 405, 411, 621, 898
BmrFI CCNGG 5 cut(s) 31, 55, 82, 137, 1019
BmsI GCATC 1 cut(s) 907
BoxI GACNNNNGTC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 428, 460
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 1281
BpuEI CTTGAG 2 cut(s) 648, 749
BpuMI CCSGG 2 cut(s) 31, 55
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 3 cut(s) 279, 656, 1322
BsaWI WCCGGW 5 cut(s) 90, 120, 341, 642, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 490, 561
Bse118I RCCGGY 2 cut(s) 98, 102
Bse1I ACTGG 1 cut(s) 1030
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 3 cut(s) 82, 137, 1019
BseDI CCNNGG 3 cut(s) 279, 656, 1322
BseLI CCNNNNNNNGG 3 cut(s) 419, 490, 561
BseMII CTCAG 7 cut(s) 177, 441, 551, 803, 1046, 1185, 1304
BseNI ACTGG 1 cut(s) 1030
BseRI GAGGAG 3 cut(s) 296, 845, 1091
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 9 cut(s) 137, 140, 339, 342, 364, 535, 809, 1127, 1195
BsgI GTGCAG 1 cut(s) 667
Bsh1236I CGCG 2 cut(s) 272, 386
Bsh1285I CGRYCG 2 cut(s) 103, 125
BshFI GGCC 4 cut(s) 102, 233, 554, 955
BshNI GGYRCC 1 cut(s) 619
BsiEI CGRYCG 2 cut(s) 103, 125
BsiHKAI GWGCWC 2 cut(s) 808, 845
BslFI GGGAC 1 cut(s) 1282
BslI CCNNNNNNNGG 3 cut(s) 419, 490, 561
BsmAI GTCTC 2 cut(s) 224, 773
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 1282
BsnI GGCC 4 cut(s) 102, 233, 554, 955
Bso31I GGTCTC 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 808, 845
Bsp13I TCCGGA 1 cut(s) 341
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
Bsp1720I GCTNAGC 1 cut(s) 1281
BspANI GGCC 4 cut(s) 102, 233, 554, 955
BspCNI CTCAG 7 cut(s) 178, 442, 552, 804, 1047, 1186, 1305
BspEI TCCGGA 1 cut(s) 341
BspFNI CGCG 2 cut(s) 272, 386
BspLI GGNNCC 4 cut(s) 405, 411, 621, 898
BspMAI CTGCAG 2 cut(s) 329, 354
BspPI GGATC 5 cut(s) 150, 486, 647, 891, 904
BspQI GCTCTTC 1 cut(s) 813
BspT107I GGYRCC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 773
BsrBI CCGCTC 1 cut(s) 986
BsrFI RCCGGY 2 cut(s) 98, 102
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 1 cut(s) 1030
BssAI RCCGGY 2 cut(s) 98, 102
BssECI CCNNGG 3 cut(s) 279, 656, 1322
BssMI GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 3 cut(s) 82, 137, 1019
Bst4CI ACNGT 4 cut(s) 414, 493, 525, 1273
Bst6I CTCTTC 2 cut(s) 813, 1345
BstAPI GCANNNNNTGC 2 cut(s) 803, 977
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 9 cut(s) 227, 231, 325, 360, 364, 368, 624, 856, 1113
BstFNI CGCG 2 cut(s) 272, 386
BstH2I RGCGCY 1 cut(s) 1007
BstHHI GCGC 4 cut(s) 240, 388, 1006, 1255
BstKTI GATC 9 cut(s) 145, 173, 395, 481, 501, 603, 655, 899, 951
BstMAI GTCTC 2 cut(s) 224, 773
BstMBI GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
BstMCI CGRYCG 2 cut(s) 103, 125
BstNI CCWGG 3 cut(s) 82, 137, 1019
BstNSI RCATGY 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 5 cut(s) 29, 53, 80, 135, 1017
BstSFI CTRYAG 2 cut(s) 325, 350
BstUI CGCG 2 cut(s) 272, 386
BstV1I GCAGC 9 cut(s) 137, 140, 339, 342, 364, 535, 809, 1127, 1195
BstX2I RGATCY 3 cut(s) 478, 498, 896
BstXI CCANNNNNNTGG 1 cut(s) 1025
BstYI RGATCY 3 cut(s) 478, 498, 896
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 4 cut(s) 102, 233, 554, 955
BtgZI GCGATG 1 cut(s) 1058
BtsI GCAGTG 2 cut(s) 655, 978
BtsIMutI CAGTG 4 cut(s) 447, 655, 978, 1152
Cac8I GCNNGC 9 cut(s) 227, 231, 325, 360, 364, 368, 624, 856, 1113
CfoI GCGC 4 cut(s) 240, 388, 1006, 1255
Cfr10I RCCGGY 2 cut(s) 98, 102
Cfr13I GGNCC 3 cut(s) 105, 232, 1015
CseI GACGC 4 cut(s) 206, 261, 1183, 1323
Csp6I GTAC 3 cut(s) 761, 934, 1191
CviAII CATG 3 cut(s) 109, 214, 901
CviQI GTAC 3 cut(s) 761, 934, 1191
DpnI GATC 9 cut(s) 144, 172, 394, 480, 500, 602, 654, 898, 950
DpnII GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
DrdI GACNNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 100, 552
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 813, 1345
EarI CTCTTC 2 cut(s) 813, 1345
EciI GGCGGA 5 cut(s) 265, 310, 1028, 1049, 1230
Ecl136II GAGCTC 1 cut(s) 843
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 656
Eco147I AGGCCT 1 cut(s) 955
Eco24I GRGCYC 1 cut(s) 845
Eco31I GGTCTC 1 cut(s) 773
Eco47I GGWCC 2 cut(s) 105, 1015
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 843
Eco57I CTGAAG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 843
EcoRII CCWGG 3 cut(s) 80, 135, 1017
EcoT14I CCWWGG 1 cut(s) 656
EcoT38I GRGCYC 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 656
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 3 cut(s) 112, 217, 904
FaiI YATR 6 cut(s) 110, 215, 722, 743, 759, 902
FalI AAGNNNNNCTT 2 cut(s) 1095, 1127
FaqI GGGAC 1 cut(s) 1282
FatI CATG 3 cut(s) 108, 213, 900
FblI GTMKAC 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 845
FspBI CTAG 1 cut(s) 1220
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 4 cut(s) 239, 387, 1005, 1254
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 1007
HaeIII GGCC 4 cut(s) 102, 233, 554, 955
HgaI GACGC 4 cut(s) 206, 261, 1183, 1323
HhaI GCGC 4 cut(s) 240, 388, 1006, 1255
Hin1II CATG 3 cut(s) 112, 217, 904
Hin6I GCGC 4 cut(s) 238, 386, 1004, 1253
HinP1I GCGC 4 cut(s) 238, 386, 1004, 1253
HphI GGTGA 4 cut(s) 80, 513, 718, 1000
Hpy166II GTNNAC 5 cut(s) 78, 211, 264, 508, 1191
Hpy188III TCNNGA 7 cut(s) 14, 342, 460, 496, 665, 704, 766
Hpy8I GTNNAC 5 cut(s) 78, 211, 264, 508, 1191
Hpy99I CGWCG 4 cut(s) 76, 376, 493, 529
HpyAV CCTTC 7 cut(s) 169, 316, 1033, 1078, 1097, 1150, 1223
HpyCH4III ACNGT 4 cut(s) 414, 493, 525, 1273
HpyCH4V TGCA 5 cut(s) 327, 352, 648, 1115, 1183
Hsp92II CATG 3 cut(s) 112, 217, 904
HspAI GCGC 4 cut(s) 238, 386, 1004, 1253
Kpn2I TCCGGA 1 cut(s) 341
Kzo9I GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 8 cut(s) 161, 257, 403, 645, 737, 851, 860, 983
Lsp1109I GCAGC 9 cut(s) 137, 140, 339, 342, 364, 535, 809, 1127, 1195
LweI GCATC 1 cut(s) 907
MaeI CTAG 1 cut(s) 1220
MaeIII GTNAC 1 cut(s) 676
MalI GATC 9 cut(s) 144, 172, 394, 480, 500, 602, 654, 898, 950
MbiI CCGCTC 1 cut(s) 986
MboI GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
MboII GAAGA 4 cut(s) 29, 800, 1148, 1332
MflI RGATCY 3 cut(s) 478, 498, 896
MhlI GDGCHC 2 cut(s) 808, 845
MluCI AATT 3 cut(s) 127, 439, 1160
MlyI GAGTC 4 cut(s) 407, 617, 655, 922
MmeI TCCRAC 2 cut(s) 381, 508
MroI TCCGGA 1 cut(s) 341
MroXI GAANNNNTTC 2 cut(s) 41, 1299
MseI TTAA 2 cut(s) 824, 1351
MspA1I CMGCKG 3 cut(s) 355, 548, 1186
MspR9I CCNGG 5 cut(s) 31, 55, 82, 137, 1019
MvaI CCWGG 3 cut(s) 82, 137, 1019
MvnI CGCG 2 cut(s) 272, 386
NciI CCSGG 2 cut(s) 31, 55
NdeII GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
NlaIII CATG 3 cut(s) 112, 217, 904
NlaIV GGNNCC 4 cut(s) 405, 411, 621, 898
NmeAIII GCCGAG 5 cut(s) 190, 201, 304, 414, 1347
NsbI TGCGCA 1 cut(s) 239
NspI RCATGY 1 cut(s) 217
PceI AGGCCT 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 813
PdmI GAANNNNTTC 2 cut(s) 41, 1299
PfeI GAWTC 8 cut(s) 20, 85, 190, 200, 631, 707, 1071, 1237
PleI GAGTC 4 cut(s) 406, 616, 655, 922
PpsI GAGTC 4 cut(s) 406, 616, 655, 922
PshAI GACNNNNGTC 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 845
Psp6I CCWGG 3 cut(s) 80, 135, 1017
PspGI CCWGG 3 cut(s) 80, 135, 1017
PspN4I GGNNCC 4 cut(s) 405, 411, 621, 898
PspPI GGNCC 3 cut(s) 105, 232, 1015
PstI CTGCAG 2 cut(s) 329, 354
PsuI RGATCY 3 cut(s) 478, 498, 896
PvuII CAGCTG 1 cut(s) 1186
RsaI GTAC 3 cut(s) 762, 935, 1192
RsaNI GTAC 3 cut(s) 761, 934, 1191
SacI GAGCTC 1 cut(s) 845
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 2 cut(s) 824, 1351
Sau3AI GATC 9 cut(s) 142, 170, 392, 478, 498, 600, 652, 896, 948
Sau96I GGNCC 3 cut(s) 105, 232, 1015
SchI GAGTC 4 cut(s) 407, 617, 655, 922
ScrFI CCNGG 5 cut(s) 31, 55, 82, 137, 1019
SduI GDGCHC 2 cut(s) 808, 845
SfaNI GCATC 1 cut(s) 907
SfcI CTRYAG 2 cut(s) 325, 350
SinI GGWCC 2 cut(s) 105, 1015
SmlI CTYRAG 2 cut(s) 663, 764
SmoI CTYRAG 2 cut(s) 663, 764
Sse9I AATT 3 cut(s) 127, 439, 1160
SseBI AGGCCT 1 cut(s) 955
SspMI CTAG 1 cut(s) 1220
SstI GAGCTC 1 cut(s) 845
StuI AGGCCT 1 cut(s) 955
StyD4I CCNGG 5 cut(s) 29, 53, 80, 135, 1017
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 4 cut(s) 414, 493, 525, 1273
TaqI TCGA 6 cut(s) 35, 125, 459, 527, 947, 1074
TaqII GACCGA 1 cut(s) 212
TasI AATT 3 cut(s) 127, 439, 1160
TatI WGTACW 3 cut(s) 760, 933, 1190
TauI GCSGC 3 cut(s) 272, 358, 554
TfiI GAWTC 8 cut(s) 20, 85, 190, 200, 631, 707, 1071, 1237
Tru1I TTAA 2 cut(s) 824, 1351
Tru9I TTAA 2 cut(s) 824, 1351
TscAI CASTG 4 cut(s) 454, 655, 978, 1152
TseI GCWGC 9 cut(s) 150, 153, 327, 330, 352, 548, 797, 1115, 1183
TspDTI ATGAA 1 cut(s) 506
TspGWI ACGGA 3 cut(s) 60, 193, 791
TspRI CASTG 4 cut(s) 454, 655, 978, 1152
VpaK11BI GGWCC 2 cut(s) 105, 1015
XapI RAATTY 3 cut(s) 127, 439, 1160
XceI RCATGY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 41, 1299
XspI CTAG 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.