MD10G1335100.v1.1

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
41238732 .. 41241061
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1335100.v1.1.491

Sequence Viewer

Length: 1371 bp
ATGGTTTCTCTTGAAGATTCCCATTCCGGCTCCAACCACCACTTCCCGCCGCACACGCGCAACTTCTATTCTCCCTCCTCCACCAAAATCCACCGCCAAACTGGCCGCTCCATGCGCACCATCCGCTCCAGCATCTACCAAGACGACCACTCCCGAACCTCCTTCGCCGCCGAAAGATCGCCTTTTGTCTCCGAGAACCTAACTGATTCTGTCGTCGACATGCGCCTCGGCGAGCTCGCCTTACGCACCCACAGCTCCGCCGCCAAGTCCGCCTCCTCCGACGAGGAGTACCTCCAGCTCTCCCAAGCCTTCAGCGATTTCTCTGCCTGCAGCAGTGACATCTCGGGAGAATTGCAACGACTCGCGAGCTTGCCGTCGCCGGAAAACGGGCCGACCTCCGAATCAGCCGAGGCTGCGCCGGAACCGGAGCCATGTCAGGGGTTTTTGCAGAGGGAGAACTTCTCGACCGAAATCATCGAAAGCATTTCGCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGGCCTCCAATCGCCGTCGCTTGCCGTGAAGCAATCTGCTGCTGCCAAGCTCAGGCTTTTAGCGAAGAACCGGGCCGACAATCGCGCCTTGATTGGCGAGTCTGGCGCCGTCCCTGCTCTAATTCCTCTGCTGCGGTGCAGCGATCCGTGGACGCAGGAGCACGCCGTCACGGCGCTGTTTAACCTCTCACTGCACGAATCGAACAAGGCAATAATCACCAATGCCGGAGCTATAAAGTCGTTAGTGTACGTCCTCAAGACCGGGACGGAGACCTCGAAGCAAAACGCCGCCTGTGCGCTGCTGAGCTTGGCGCTAATTGAAGAGAACAAGGGCTCAATCGGAGCATGCGGCGCGATTCCGCCCCTGGTTTCCCTGTTAATAAGTGGATCCATGAGGGGCAAAAAGGACGCCTTGACGACTCTGTACAAGCTCTGCTCGATAAAGCCCAACAAAGAGAGGGCGGTGAGCGCTGGAGCTGTGAAGCCGCTAGTGGCGCTGGTGGCGGAGCAGGGGACGGGCCTGGCGGAGAAGGCGATGGTGGTGCTAAGTAGCTTGGCAGGAGTTGAGGAGGGAAAGGAGGCTATTGTGGAGGAAGGTGGGCTGGCAGCGCTTGTGGAGGCGATTGAGGATGGGTCGGTGAAAGGAAAGGAGTTTGCGGTGTTGACACTGTTGCAGCTGTGCACTGAGAGTGTGAGGAACAGAGGGTTGCTTGTGAGGGAAGGAGGGATTCCGCCGTTGGTTGCGCTTTCGCAGACTGGGAGTGTTAAAGCTAAGCACAAGGCTGAAACGCTTCTTGGGTACTTGAGAGAACCGAGACAAGAAGCGTCCTCTTCGGCTCTTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

457

Amino Acids

48.41

Weight (kDa)

6.0

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 188 - 444 1.2e-23 Plant U-box protein ARM repeat region
Arm PF00514 202 - 239 5.7e-08 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 234 - 436 3.3e-16 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 632
AccBSI CCGCTC 2 cut(s) 108, 126
AccI GTMKAC 2 cut(s) 216, 525
AccII CGCG 4 cut(s) 58, 365, 612, 881
AclWI GGATC 4 cut(s) 504, 665, 909, 922
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 295, 485
AcyI GRCGYC 2 cut(s) 633, 936
AfaI GTAC 4 cut(s) 290, 776, 953, 1328
AfeI AGCGCT 2 cut(s) 997, 1137
AfiI CCNNNNNNNGG 3 cut(s) 386, 437, 579
AgsI TTSAA 2 cut(s) 14, 848
AjnI CCWGG 2 cut(s) 891, 1047
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 1305, 1337
Alw21I GWGCWC 3 cut(s) 237, 690, 1211
Alw26I GTCTC 3 cut(s) 193, 791, 1336
Alw44I GTGCAC 1 cut(s) 1207
AlwI GGATC 4 cut(s) 504, 665, 909, 922
Ama87I CYCGRG 1 cut(s) 343
Aor51HI AGCGCT 2 cut(s) 997, 1137
AoxI GGCC 5 cut(s) 103, 389, 529, 600, 1045
ApaLI GTGCAC 1 cut(s) 1207
ApeKI GCWGC 9 cut(s) 330, 413, 566, 569, 658, 666, 826, 1133, 1201
Asp700I GAANNNNTTC 1 cut(s) 1317
AspS9I GGNCC 3 cut(s) 389, 600, 1045
AsuC2I CCSGG 2 cut(s) 599, 790
AsuHPI GGTGA 3 cut(s) 736, 1003, 1177
AvaI CYCGRG 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 1211
BamHI GGATCC 1 cut(s) 914
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 2 cut(s) 237, 863
Bbv12I GWGCWC 3 cut(s) 237, 690, 1211
BbvI GCAGC 9 cut(s) 342, 400, 553, 556, 645, 678, 813, 1145, 1213
BccI CCATC 3 cut(s) 128, 1057, 1151
BceAI ACGGC 8 cut(s) 358, 526, 536, 544, 620, 677, 714, 1246
BcgI CGANNNNNNTGC 4 cut(s) 305, 339, 1051, 1085
BciT130I CCWGG 2 cut(s) 893, 1049
BcnI CCSGG 2 cut(s) 599, 790
BcoDI GTCTC 3 cut(s) 193, 791, 1336
BfaI CTAG 1 cut(s) 1016
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 6 cut(s) 636, 704, 842, 999, 1025, 1139
BglI GCCNNNNNGGC 2 cut(s) 102, 698
BglII AGATCT 1 cut(s) 516
BlpI GCTNAGC 2 cut(s) 830, 1299
Bme1390I CCNGG 4 cut(s) 599, 790, 893, 1049
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 389, 600, 1045
BmiI GGNNCC 5 cut(s) 31, 423, 429, 634, 916
BmrFI CCNGG 4 cut(s) 599, 790, 893, 1049
BmrI ACTGGG 1 cut(s) 1293
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 1293
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 3 cut(s) 112, 278, 1020
Bpu10I CCTNAGC 1 cut(s) 578
Bpu1102I GCTNAGC 2 cut(s) 830, 1299
BpuEI CTTGAG 2 cut(s) 767, 1351
BpuMI CCSGG 2 cut(s) 599, 790
BsaHI GRCGYC 2 cut(s) 633, 936
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 4 cut(s) 226, 408, 674, 891
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 437, 579
Bse1I ACTGG 2 cut(s) 106, 1288
BseBI CCWGG 2 cut(s) 893, 1049
BseDI CCNNGG 4 cut(s) 226, 408, 674, 891
BseGI GGATG 2 cut(s) 120, 1162
BseLI CCNNNNNNNGG 3 cut(s) 386, 437, 579
BseMII CTCAG 3 cut(s) 592, 821, 1203
BseNI ACTGG 2 cut(s) 106, 1288
BseRI GAGGAG 4 cut(s) 67, 265, 299, 1109
BseSI GKGCMC 1 cut(s) 1211
BseXI GCAGC 9 cut(s) 342, 400, 553, 556, 645, 678, 813, 1145, 1213
BsgI GTGCAG 2 cut(s) 685, 704
Bsh1236I CGCG 4 cut(s) 58, 365, 612, 881
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 5 cut(s) 105, 391, 531, 602, 1047
BshNI GGYRCC 1 cut(s) 632
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 3 cut(s) 237, 690, 1211
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 8 cut(s) 27, 380, 419, 425, 491, 598, 753, 789
BslFI GGGAC 3 cut(s) 623, 805, 1054
BslI CCNNNNNNNGG 3 cut(s) 386, 437, 579
BsmAI GTCTC 3 cut(s) 193, 791, 1336
BsmFI GGGAC 3 cut(s) 623, 805, 1054
BsnI GGCC 5 cut(s) 105, 391, 531, 602, 1047
Bso31I GGTCTC 1 cut(s) 791
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 4 cut(s) 237, 690, 863, 1211
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 5 cut(s) 176, 496, 516, 670, 914
Bsp1720I GCTNAGC 2 cut(s) 830, 1299
Bsp68I TCGCGA 1 cut(s) 365
BspANI GGCC 5 cut(s) 105, 391, 531, 602, 1047
BspCNI CTCAG 3 cut(s) 591, 822, 1204
BspFNI CGCG 4 cut(s) 58, 365, 612, 881
BspLI GGNNCC 5 cut(s) 31, 423, 429, 634, 916
BspMAI CTGCAG 1 cut(s) 332
BspPI GGATC 4 cut(s) 504, 665, 909, 922
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 791
BsrBI CCGCTC 2 cut(s) 108, 126
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 2 cut(s) 106, 1288
BssECI CCNNGG 4 cut(s) 226, 408, 674, 891
BssMI GATC 5 cut(s) 176, 496, 516, 670, 914
BssNI GRCGYC 2 cut(s) 633, 936
Bst2UI CCWGG 2 cut(s) 893, 1049
Bst4CI ACNGT 2 cut(s) 511, 1197
Bst6I CTCTTC 2 cut(s) 843, 1363
BstACI GRCGYC 2 cut(s) 633, 936
BstAUI TGTACA 1 cut(s) 951
BstC8I GCNNGC 9 cut(s) 233, 237, 328, 367, 371, 549, 690, 874, 1131
BstDEI CTNAG 5 cut(s) 578, 830, 1073, 1212, 1299
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 120, 1162
BstFNI CGCG 4 cut(s) 58, 365, 612, 881
BstH2I RGCGCY 6 cut(s) 636, 704, 842, 999, 1025, 1139
BstKTI GATC 5 cut(s) 179, 499, 519, 673, 917
BstMAI GTCTC 3 cut(s) 193, 791, 1336
BstMBI GATC 5 cut(s) 176, 496, 516, 670, 914
BstMCI CGRYCG 1 cut(s) 468
BstNI CCWGG 2 cut(s) 893, 1049
BstNSI RCATGY 2 cut(s) 223, 876
BstSCI CCNGG 4 cut(s) 597, 788, 891, 1047
BstSFI CTRYAG 1 cut(s) 328
BstSLI GKGCMC 1 cut(s) 1211
BstUI CGCG 4 cut(s) 58, 365, 612, 881
BstV1I GCAGC 9 cut(s) 342, 400, 553, 556, 645, 678, 813, 1145, 1213
BstX2I RGATCY 3 cut(s) 496, 516, 914
BstYI RGATCY 3 cut(s) 496, 516, 914
BsuRI GGCC 5 cut(s) 105, 391, 531, 602, 1047
BtgI CCRYGG 1 cut(s) 674
BtgZI GCGATG 1 cut(s) 1076
BtsCI GGATG 2 cut(s) 120, 1162
BtsI GCAGTG 2 cut(s) 340, 716
BtsIMutI CAGTG 4 cut(s) 340, 716, 1193, 1209
BtuMI TCGCGA 1 cut(s) 365
Cac8I GCNNGC 9 cut(s) 233, 237, 328, 367, 371, 549, 690, 874, 1131
Cfr13I GGNCC 3 cut(s) 389, 600, 1045
CseI GACGC 4 cut(s) 511, 688, 944, 1341
Csp6I GTAC 4 cut(s) 289, 775, 952, 1327
CviAII CATG 5 cut(s) 112, 220, 432, 873, 919
CviQI GTAC 4 cut(s) 289, 775, 952, 1327
DdeI CTNAG 5 cut(s) 578, 830, 1073, 1212, 1299
DinI GGCGCC 1 cut(s) 634
DpnI GATC 5 cut(s) 178, 498, 518, 672, 916
DpnII GATC 5 cut(s) 176, 496, 516, 670, 914
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 843, 1363
EarI CTCTTC 2 cut(s) 843, 1363
EciI GGCGGA 6 cut(s) 247, 259, 876, 1046, 1067, 1248
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 237, 863
Eco31I GGTCTC 1 cut(s) 791
Eco47III AGCGCT 2 cut(s) 997, 1137
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 295, 485
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 891, 1047
EcoT38I GRGCYC 2 cut(s) 237, 863
EgeI GGCGCC 1 cut(s) 634
EheI GGCGCC 1 cut(s) 634
FaeI CATG 5 cut(s) 115, 223, 435, 876, 922
FaiI YATR 6 cut(s) 113, 221, 433, 761, 874, 920
FalI AAGNNNNNCTT 4 cut(s) 166, 198, 923, 955
FaqI GGGAC 3 cut(s) 623, 805, 1054
FatI CATG 5 cut(s) 111, 219, 431, 872, 918
FauI CCCGC 1 cut(s) 54
FblI GTMKAC 2 cut(s) 216, 525
FokI GGATG 2 cut(s) 107, 1169
FriOI GRGCYC 2 cut(s) 237, 863
FspAI RTGCGCAY 1 cut(s) 116
FspBI CTAG 1 cut(s) 1016
FspI TGCGCA 1 cut(s) 116
GsuI CTGGAG 3 cut(s) 112, 278, 1020
HaeII RGCGCY 6 cut(s) 636, 704, 842, 999, 1025, 1139
HaeIII GGCC 5 cut(s) 105, 391, 531, 602, 1047
HapII CCGG 8 cut(s) 27, 380, 419, 425, 491, 598, 753, 789
HgaI GACGC 4 cut(s) 511, 688, 944, 1341
Hin1I GRCGYC 2 cut(s) 633, 936
Hin1II CATG 5 cut(s) 115, 223, 435, 876, 922
HincII GTYRAC 3 cut(s) 217, 526, 1191
HindII GTYRAC 3 cut(s) 217, 526, 1191
HinfI GANTC 9 cut(s) 17, 206, 360, 401, 626, 725, 883, 946, 1255
HpaII CCGG 8 cut(s) 27, 380, 419, 425, 491, 598, 753, 789
HphI GGTGA 3 cut(s) 736, 1003, 1177
Hpy166II GTNNAC 6 cut(s) 217, 526, 678, 775, 1191, 1209
Hpy188I TCNGA 4 cut(s) 193, 280, 400, 869
Hpy188III TCNNGA 7 cut(s) 11, 153, 345, 364, 463, 514, 784
Hpy8I GTNNAC 6 cut(s) 217, 526, 678, 775, 1191, 1209
Hpy99I CGWCG 7 cut(s) 218, 284, 379, 511, 527, 530, 547
HpyAV CCTTC 5 cut(s) 172, 319, 1051, 1115, 1241
HpyCH4III ACNGT 2 cut(s) 511, 1197
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 7 cut(s) 330, 355, 448, 666, 721, 1201, 1209
HpyF3I CTNAG 5 cut(s) 578, 830, 1073, 1212, 1299
HpySE526I ACGT 1 cut(s) 777
Hsp92I GRCGYC 2 cut(s) 633, 936
Hsp92II CATG 5 cut(s) 115, 223, 435, 876, 922
KasI GGCGCC 1 cut(s) 632
Kzo9I GATC 5 cut(s) 176, 496, 516, 670, 914
Lsp1109I GCAGC 9 cut(s) 342, 400, 553, 556, 645, 678, 813, 1145, 1213
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 1016
MaeII ACGT 1 cut(s) 777
MaeIII GTNAC 2 cut(s) 335, 694
MalI GATC 5 cut(s) 178, 498, 518, 672, 916
MbiI CCGCTC 2 cut(s) 108, 126
MboI GATC 5 cut(s) 176, 496, 516, 670, 914
MboII GAAGA 5 cut(s) 26, 491, 604, 860, 1350
MflI RGATCY 3 cut(s) 496, 516, 914
MhlI GDGCHC 4 cut(s) 237, 690, 863, 1211
MluCI AATT 3 cut(s) 350, 648, 843
Mly113I GGCGCC 1 cut(s) 633
MlyI GAGTC 3 cut(s) 354, 635, 940
MmeI TCCRAC 2 cut(s) 57, 303
MroXI GAANNNNTTC 1 cut(s) 1317
MseI TTAA 3 cut(s) 708, 905, 1293
MspA1I CMGCKG 1 cut(s) 1204
MspI CCGG 8 cut(s) 27, 380, 419, 425, 491, 598, 753, 789
MspR9I CCNGG 4 cut(s) 599, 790, 893, 1049
MvaI CCWGG 2 cut(s) 893, 1049
MvnI CGCG 4 cut(s) 58, 365, 612, 881
NarI GGCGCC 1 cut(s) 633
NciI CCSGG 2 cut(s) 599, 790
NdeII GATC 5 cut(s) 176, 496, 516, 670, 914
NlaIII CATG 5 cut(s) 115, 223, 435, 876, 922
NlaIV GGNNCC 5 cut(s) 31, 423, 429, 634, 916
NmeAIII GCCGAG 2 cut(s) 207, 433
NmuCI GTSAC 2 cut(s) 335, 694
NruI TCGCGA 1 cut(s) 365
NsbI TGCGCA 1 cut(s) 116
NspI RCATGY 2 cut(s) 223, 876
PaeI GCATGC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 800
PdmI GAANNNNTTC 1 cut(s) 1317
PfeI GAWTC 6 cut(s) 17, 206, 401, 725, 883, 1255
PleI GAGTC 3 cut(s) 354, 634, 940
PluTI GGCGCC 1 cut(s) 636
PpsI GAGTC 3 cut(s) 354, 634, 940
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 891, 1047
PspGI CCWGG 2 cut(s) 891, 1047
PspN4I GGNNCC 5 cut(s) 31, 423, 429, 634, 916
PspPI GGNCC 3 cut(s) 389, 600, 1045
PstI CTGCAG 1 cut(s) 332
PsuI RGATCY 3 cut(s) 496, 516, 914
PvuII CAGCTG 1 cut(s) 1204
RruI TCGCGA 1 cut(s) 365
RsaI GTAC 4 cut(s) 290, 776, 953, 1328
RsaNI GTAC 4 cut(s) 289, 775, 952, 1327
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 2 cut(s) 215, 524
SaqAI TTAA 3 cut(s) 708, 905, 1293
Sau3AI GATC 5 cut(s) 176, 496, 516, 670, 914
Sau96I GGNCC 3 cut(s) 389, 600, 1045
SchI GAGTC 3 cut(s) 354, 635, 940
ScrFI CCNGG 4 cut(s) 599, 790, 893, 1049
SduI GDGCHC 4 cut(s) 237, 690, 863, 1211
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 328
SfoI GGCGCC 1 cut(s) 634
SgrDI CGTCGACG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 782, 1330
SmoI CTYRAG 2 cut(s) 782, 1330
SphI GCATGC 1 cut(s) 876
Sse9I AATT 3 cut(s) 350, 648, 843
SspDI GGCGCC 1 cut(s) 632
SspMI CTAG 1 cut(s) 1016
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 4 cut(s) 597, 788, 891, 1047
TaaI ACNGT 2 cut(s) 511, 1197
TaiI ACGT 1 cut(s) 780
TaqI TCGA 7 cut(s) 216, 464, 477, 525, 728, 803, 965
TaqII GACCGA 1 cut(s) 482
TasI AATT 3 cut(s) 350, 648, 843
TatI WGTACW 1 cut(s) 951
TauI GCSGC 7 cut(s) 52, 108, 170, 263, 818, 879, 1015
TfiI GAWTC 6 cut(s) 17, 206, 401, 725, 883, 1255
Tru1I TTAA 3 cut(s) 708, 905, 1293
Tru9I TTAA 3 cut(s) 708, 905, 1293
TscAI CASTG 4 cut(s) 340, 723, 1200, 1216
TseFI GTSAC 2 cut(s) 335, 694
TseI GCWGC 9 cut(s) 330, 413, 566, 569, 658, 666, 826, 1133, 1201
Tsp45I GTSAC 2 cut(s) 335, 694
TspGWI ACGGA 2 cut(s) 663, 809
TspRI CASTG 4 cut(s) 340, 723, 1200, 1216
VneI GTGCAC 1 cut(s) 1207
XceI RCATGY 2 cut(s) 223, 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XmiI GTMKAC 2 cut(s) 216, 525
XmnI GAANNNNTTC 1 cut(s) 1317
XspI CTAG 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.