Rh5BG010200

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
635204 .. 638519
3316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG010200.1

Sequence Viewer

Length: 1359 bp
ATGGTTTCTCTAGAAGATTCTCATTCCGGTTCGAACCATTTCCCTCCTATCACCCGAAACTTCTACTCTCCGGCGTCCACCAAGCTTCACCGGAACACCGGCCGGTCCATGCGGACCATTCGCTCCAATTTCTACCAGGAAGATCAGAGCTGCTGTTCCTTCACCGAAAGAACGCCCTTTGTATCTGAGAATTTGACAGATTCCGTTATGGACATGCGTCTCGGCGAGCTGGCCCTGCGCACCGGCAGCAACTCGGGCAAGTCCACCGCCGCGTCGGCCGAGGAGTTCCTCCAGCTCTCCCAAGCCTTCAGCGATTTCTCCGCCTGCAGCAGCGATATCTCCGGAGAGCTACAGCGGCTCGCCAGCTTGCCGTCGCCGGAAAACGCACCGAGATCCGAGTTGGAGCCCGAGCCGGAGCCGTGCGAGGGGTTTTTGCAGAGGGAGAATTTCTCCACCGAGATAATCGAGAGCATTTCGCCGGAGGATCTTCAACCGACGGTCAAGATCTGTATAGACGGGCTCCAATCGCCGTCGATTGCCGTCAAGCAATCTGCTGCGGCCAAGCTCAGGCTTTTAGCCAAAAACCGAGCTGATAATCGGGCTTTGATCGGCGAGTCAGGCGCGGTGCCTGCTTTGATTCCTCTGCTCCGATGCAGTGACCCTTGGACTCAAGAACACGCCGTAACAGCTTTGCTCAACCTATCGCTTCACGAATCAAACAAGGCTATAATCACCAATGCCGGAGCTATAAAGTCCTTGGTGTATGTACTCAAGACCGGGACGGAGACCTCTAAGCAAAACGCCGCCTGTGCGCTTCTGAGCTTGGCTTTAATGGAAGAGAACAAGAGCTCAATCGGAGCTTGCGGAGCCATTCCTCCTCTGGTTTCGTTGTTAATAAGTGGATCCATGAGGGGGAAGAAAGATGCTTTGACGACTCTGTACAAGCTCTGCTCAATTAGGCCTAATAAAGAGAGGGCGGTGAGTGCCGGAGCGGTGAAGCCGTTGGTGGCGCTTGTGGCGGACCAGGCGACTGGCTTGGCGGAGAAGGCGATGGTGGTGCTGAGTAGCTTGGCGGGAATCGACGAGGGGAAGGAGGCCATTGTGGAGGAAGGTGGGCTTGCAGCACTTGTGGAAGTGATTGAAGATGGTTCAGTCAAAGGGAAGGAGTTTGCGGTTTTGACGCTGTTGCAGCTGTGTACTGAGAGTGTGAGGAATAGAGGGTTGCTAGTCAGAGAAGGAGGGATTCCACCTTTGGTTGCGCTTTCGCAGAGTGGGACTGTTAGAGCTAAGCACAAGGCTGAAACGCTTCTTGGGTATCTGAGAGAGCCGAGACAAGAAGCGTCCTCTTCAACTCCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

48.22

Weight (kDa)

5.73

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 184 - 440 5.1e-24 Plant U-box protein ARM repeat region
Arm PF00514 198 - 235 7.7e-08 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 230 - 430 1.1e-16 ARMC5
Arm PF00514 280 - 318 5.8e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 992
AccII CGCG 2 cut(s) 272, 623
AccIII TCCGGA 1 cut(s) 341
AclWI GGATC 4 cut(s) 387, 492, 897, 910
AcoI YGGCCR 3 cut(s) 100, 276, 558
AcsI RAATTY 2 cut(s) 190, 445
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 3 cut(s) 768, 941, 1198
AfiI CCNNNNNNNGG 3 cut(s) 425, 567, 912
AgsI TTSAA 3 cut(s) 491, 1142, 1350
AjnI CCWGG 2 cut(s) 135, 1023
AjuI GAANNNNNNNTTGG 2 cut(s) 1293, 1325
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 3 cut(s) 224, 779, 1324
AlwI GGATC 4 cut(s) 387, 492, 897, 910
Ama87I CYCGRG 2 cut(s) 253, 407
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 6 cut(s) 100, 231, 276, 558, 959, 1095
ApeKI GCWGC 7 cut(s) 150, 246, 327, 330, 554, 1121, 1189
ApoI RAATTY 2 cut(s) 190, 445
Asp700I GAANNNNTTC 2 cut(s) 38, 1305
AspLEI GCGC 5 cut(s) 240, 623, 814, 1012, 1261
AspS9I GGNCC 4 cut(s) 105, 114, 232, 1021
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 6 cut(s) 43, 80, 154, 724, 991, 1006
AsuII TTCGAA 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 253, 407
AvaII GGWCC 3 cut(s) 105, 114, 1021
BamHI GGATCC 1 cut(s) 902
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 3 cut(s) 408, 522, 851
Bbv12I GWGCWC 1 cut(s) 851
BbvI GCAGC 7 cut(s) 137, 258, 339, 342, 541, 1133, 1201
BccI CCATC 2 cut(s) 1045, 1139
BceAI ACGGC 6 cut(s) 355, 403, 514, 524, 665, 985
BcgI CGANNNNNNTGC 2 cut(s) 1039, 1073
BciT130I CCWGG 2 cut(s) 137, 1025
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 3 cut(s) 224, 779, 1324
BfaI CTAG 2 cut(s) 11, 1226
BfmI CTRYAG 2 cut(s) 325, 350
BfoI RGCGCY 1 cut(s) 1013
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 504
BlpI GCTNAGC 1 cut(s) 1287
Bme1390I CCNGG 3 cut(s) 137, 778, 1025
Bme18I GGWCC 3 cut(s) 105, 114, 1021
BmeT110I CYCGRG 2 cut(s) 253, 407
BmgT120I GGNCC 4 cut(s) 105, 114, 232, 1021
BmiI GGNNCC 6 cut(s) 405, 417, 521, 627, 868, 904
BmrFI CCNGG 3 cut(s) 137, 778, 1025
BmsI GCATC 2 cut(s) 641, 913
BoxI GACNNNNGTC 1 cut(s) 216
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 566
Bpu1102I GCTNAGC 1 cut(s) 1287
Bpu14I TTCGAA 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 654, 755
BpuMI CCSGG 1 cut(s) 778
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 279, 662, 756
BsaWI WCCGGW 3 cut(s) 26, 90, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 425, 567, 912
Bse118I RCCGGY 3 cut(s) 98, 102, 242
Bse1I ACTGG 1 cut(s) 1036
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 137, 1025
BseDI CCNNGG 3 cut(s) 279, 662, 756
BseLI CCNNNNNNNGG 3 cut(s) 425, 567, 912
BseMII CTCAG 6 cut(s) 177, 580, 809, 1052, 1191, 1310
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 2 cut(s) 296, 867
BseX3I CGGCCG 2 cut(s) 100, 276
BseXI GCAGC 7 cut(s) 137, 258, 339, 342, 541, 1133, 1201
Bsh1236I CGCG 2 cut(s) 272, 623
Bsh1285I CGRYCG 2 cut(s) 103, 279
BshFI GGCC 6 cut(s) 102, 233, 278, 560, 961, 1097
BshNI GGYRCC 1 cut(s) 625
BsiEI CGRYCG 2 cut(s) 103, 279
BsiHKAI GWGCWC 1 cut(s) 851
BsiHKCI CYCGRG 2 cut(s) 253, 407
BslFI GGGAC 2 cut(s) 793, 1288
BslI CCNNNNNNNGG 3 cut(s) 425, 567, 912
BsmAI GTCTC 3 cut(s) 224, 779, 1324
BsmBI CGTCTC 1 cut(s) 224
BsmFI GGGAC 2 cut(s) 793, 1288
BsnI GGCC 6 cut(s) 102, 233, 278, 560, 961, 1097
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 2 cut(s) 253, 407
Bsp119I TTCGAA 1 cut(s) 32
Bsp1286I GDGCHC 3 cut(s) 408, 522, 851
Bsp13I TCCGGA 1 cut(s) 341
Bsp1407I TGTACA 1 cut(s) 939
Bsp143I GATC 6 cut(s) 142, 392, 484, 504, 606, 902
Bsp1720I GCTNAGC 1 cut(s) 1287
BspANI GGCC 6 cut(s) 102, 233, 278, 560, 961, 1097
BspCNI CTCAG 6 cut(s) 178, 579, 810, 1053, 1192, 1311
BspEI TCCGGA 1 cut(s) 341
BspFNI CGCG 2 cut(s) 272, 623
BspLI GGNNCC 6 cut(s) 405, 417, 521, 627, 868, 904
BspMAI CTGCAG 1 cut(s) 329
BspPI GGATC 4 cut(s) 387, 492, 897, 910
BspT104I TTCGAA 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 779
BsrBI CCGCTC 1 cut(s) 992
BsrFI RCCGGY 3 cut(s) 98, 102, 242
BsrGI TGTACA 1 cut(s) 939
BsrI ACTGG 1 cut(s) 1036
BssAI RCCGGY 3 cut(s) 98, 102, 242
BssECI CCNNGG 3 cut(s) 279, 662, 756
BssMI GATC 6 cut(s) 142, 392, 484, 504, 606, 902
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 662, 756
Bst2UI CCWGG 2 cut(s) 137, 1025
Bst4CI ACNGT 2 cut(s) 499, 1279
Bst6I CTCTTC 2 cut(s) 831, 1351
BstACI GRCGYC 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 939
BstBI TTCGAA 1 cut(s) 32
BstC8I GCNNGC 9 cut(s) 227, 231, 325, 360, 364, 368, 630, 862, 1119
BstDEI CTNAG 8 cut(s) 186, 566, 792, 818, 1061, 1200, 1287, 1319
BstFNI CGCG 2 cut(s) 272, 623
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 5 cut(s) 240, 623, 814, 1012, 1261
BstKTI GATC 6 cut(s) 145, 395, 487, 507, 609, 905
BstMAI GTCTC 3 cut(s) 224, 779, 1324
BstMBI GATC 6 cut(s) 142, 392, 484, 504, 606, 902
BstMCI CGRYCG 2 cut(s) 103, 279
BstNI CCWGG 2 cut(s) 137, 1025
BstNSI RCATGY 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 3 cut(s) 135, 776, 1023
BstSFI CTRYAG 2 cut(s) 325, 350
BstUI CGCG 2 cut(s) 272, 623
BstV1I GCAGC 7 cut(s) 137, 258, 339, 342, 541, 1133, 1201
BstX2I RGATCY 4 cut(s) 392, 484, 504, 902
BstXI CCANNNNNNTGG 1 cut(s) 1031
BstYI RGATCY 4 cut(s) 392, 484, 504, 902
BstZI CGGCCG 2 cut(s) 100, 276
BsuRI GGCC 6 cut(s) 102, 233, 278, 560, 961, 1097
BtgZI GCGATG 1 cut(s) 1064
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 9 cut(s) 227, 231, 325, 360, 364, 368, 630, 862, 1119
CfoI GCGC 5 cut(s) 240, 623, 814, 1012, 1261
Cfr10I RCCGGY 3 cut(s) 98, 102, 242
Cfr13I GGNCC 4 cut(s) 105, 114, 232, 1021
CseI GACGC 5 cut(s) 63, 206, 261, 1189, 1329
Csp6I GTAC 3 cut(s) 767, 940, 1197
CviAII CATG 3 cut(s) 109, 214, 907
CviQI GTAC 3 cut(s) 767, 940, 1197
DdeI CTNAG 8 cut(s) 186, 566, 792, 818, 1061, 1200, 1287, 1319
DpnI GATC 6 cut(s) 144, 394, 486, 506, 608, 904
DpnII GATC 6 cut(s) 142, 392, 484, 504, 606, 902
EaeI YGGCCR 3 cut(s) 100, 276, 558
EagI CGGCCG 2 cut(s) 100, 276
Eam1104I CTCTTC 2 cut(s) 831, 1351
EarI CTCTTC 2 cut(s) 831, 1351
EciI GGCGGA 3 cut(s) 310, 1034, 1055
Ecl136II GAGCTC 1 cut(s) 849
EclXI CGGCCG 2 cut(s) 100, 276
Eco130I CCWWGG 2 cut(s) 662, 756
Eco147I AGGCCT 1 cut(s) 961
Eco24I GRGCYC 3 cut(s) 408, 522, 851
Eco31I GGTCTC 1 cut(s) 779
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 105, 114, 1021
Eco52I CGGCCG 2 cut(s) 100, 276
Eco53kI GAGCTC 1 cut(s) 849
Eco57I CTGAAG 1 cut(s) 292
Eco88I CYCGRG 2 cut(s) 253, 407
EcoICRI GAGCTC 1 cut(s) 849
EcoRII CCWGG 2 cut(s) 135, 1023
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 662, 756
EcoT38I GRGCYC 3 cut(s) 408, 522, 851
ErhI CCWWGG 2 cut(s) 662, 756
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 3 cut(s) 112, 217, 910
FaiI YATR 8 cut(s) 110, 209, 215, 512, 728, 749, 765, 908
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 2 cut(s) 793, 1288
FatI CATG 3 cut(s) 108, 213, 906
FauI CCCGC 1 cut(s) 1066
FriOI GRGCYC 3 cut(s) 408, 522, 851
FspBI CTAG 2 cut(s) 11, 1226
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 5 cut(s) 239, 622, 813, 1011, 1260
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 1013
HaeIII GGCC 6 cut(s) 102, 233, 278, 560, 961, 1097
HgaI GACGC 5 cut(s) 63, 206, 261, 1189, 1329
HhaI GCGC 5 cut(s) 240, 623, 814, 1012, 1261
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 3 cut(s) 112, 217, 910
Hin6I GCGC 5 cut(s) 238, 621, 812, 1010, 1259
HinP1I GCGC 5 cut(s) 238, 621, 812, 1010, 1259
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 9 cut(s) 17, 200, 614, 637, 667, 713, 934, 1077, 1243
HphI GGTGA 6 cut(s) 43, 80, 154, 724, 991, 1006
Hpy166II GTNNAC 3 cut(s) 78, 264, 1197
Hpy188I TCNGA 8 cut(s) 147, 187, 397, 650, 819, 857, 1232, 1320
Hpy188III TCNNGA 7 cut(s) 11, 342, 466, 502, 671, 710, 772
Hpy8I GTNNAC 3 cut(s) 78, 264, 1197
Hpy99I CGWCG 5 cut(s) 277, 376, 499, 535, 1085
HpyAV CCTTC 7 cut(s) 169, 316, 1039, 1084, 1103, 1156, 1229
HpyCH4III ACNGT 2 cut(s) 499, 1279
HpyCH4V TGCA 5 cut(s) 327, 436, 654, 1121, 1189
HpyF3I CTNAG 8 cut(s) 186, 566, 792, 818, 1061, 1200, 1287, 1319
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 3 cut(s) 112, 217, 910
HspAI GCGC 5 cut(s) 238, 621, 812, 1010, 1259
Kpn2I TCCGGA 1 cut(s) 341
Kzo9I GATC 6 cut(s) 142, 392, 484, 504, 606, 902
LmnI GCTCC 9 cut(s) 128, 403, 415, 525, 651, 743, 857, 866, 989
Lsp1109I GCAGC 7 cut(s) 137, 258, 339, 342, 541, 1133, 1201
LweI GCATC 2 cut(s) 641, 913
MaeI CTAG 2 cut(s) 11, 1226
MaeIII GTNAC 2 cut(s) 656, 682
MalI GATC 6 cut(s) 144, 394, 486, 506, 608, 904
MbiI CCGCTC 1 cut(s) 992
MboI GATC 6 cut(s) 142, 392, 484, 504, 606, 902
MboII GAAGA 7 cut(s) 26, 152, 479, 848, 928, 1154, 1338
MflI RGATCY 4 cut(s) 392, 484, 504, 902
MhlI GDGCHC 3 cut(s) 408, 522, 851
MluCI AATT 4 cut(s) 127, 190, 445, 954
MlyI GAGTC 3 cut(s) 623, 661, 928
MmeI TCCRAC 1 cut(s) 381
MroI TCCGGA 1 cut(s) 341
MroXI GAANNNNTTC 2 cut(s) 38, 1305
MseI TTAA 3 cut(s) 830, 893, 1357
MspA1I CMGCKG 2 cut(s) 355, 1192
MspR9I CCNGG 3 cut(s) 137, 778, 1025
MvaI CCWGG 2 cut(s) 137, 1025
MvnI CGCG 2 cut(s) 272, 623
NciI CCSGG 1 cut(s) 778
NdeII GATC 6 cut(s) 142, 392, 484, 504, 606, 902
NlaIII CATG 3 cut(s) 112, 217, 910
NlaIV GGNNCC 6 cut(s) 405, 417, 521, 627, 868, 904
NmeAIII GCCGAG 3 cut(s) 201, 304, 1353
NmuCI GTSAC 1 cut(s) 656
NsbI TGCGCA 1 cut(s) 239
NspI RCATGY 1 cut(s) 217
NspV TTCGAA 1 cut(s) 32
PceI AGGCCT 1 cut(s) 961
PdmI GAANNNNTTC 2 cut(s) 38, 1305
PfeI GAWTC 6 cut(s) 17, 200, 637, 713, 1077, 1243
PleI GAGTC 3 cut(s) 622, 661, 928
PpsI GAGTC 3 cut(s) 622, 661, 928
PshAI GACNNNNGTC 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 851
Psp6I CCWGG 2 cut(s) 135, 1023
PspGI CCWGG 2 cut(s) 135, 1023
PspN4I GGNNCC 6 cut(s) 405, 417, 521, 627, 868, 904
PspPI GGNCC 4 cut(s) 105, 114, 232, 1021
PstI CTGCAG 1 cut(s) 329
PsuI RGATCY 4 cut(s) 392, 484, 504, 902
PvuII CAGCTG 1 cut(s) 1192
RsaI GTAC 3 cut(s) 768, 941, 1198
RsaNI GTAC 3 cut(s) 767, 940, 1197
SacI GAGCTC 1 cut(s) 851
SaqAI TTAA 3 cut(s) 830, 893, 1357
Sau3AI GATC 6 cut(s) 142, 392, 484, 504, 606, 902
Sau96I GGNCC 4 cut(s) 105, 114, 232, 1021
SchI GAGTC 3 cut(s) 623, 661, 928
ScrFI CCNGG 3 cut(s) 137, 778, 1025
SduI GDGCHC 3 cut(s) 408, 522, 851
SfaNI GCATC 2 cut(s) 641, 913
SfcI CTRYAG 2 cut(s) 325, 350
SfuI TTCGAA 1 cut(s) 32
SinI GGWCC 3 cut(s) 105, 114, 1021
SmlI CTYRAG 2 cut(s) 669, 770
SmoI CTYRAG 2 cut(s) 669, 770
Sse9I AATT 4 cut(s) 127, 190, 445, 954
SseBI AGGCCT 1 cut(s) 961
SspMI CTAG 2 cut(s) 11, 1226
SstI GAGCTC 1 cut(s) 851
StuI AGGCCT 1 cut(s) 961
StyD4I CCNGG 3 cut(s) 135, 776, 1023
StyI CCWWGG 2 cut(s) 662, 756
TaaI ACNGT 2 cut(s) 499, 1279
TaqI TCGA 4 cut(s) 32, 465, 533, 1080
TasI AATT 4 cut(s) 127, 190, 445, 954
TatI WGTACW 3 cut(s) 766, 939, 1196
TauI GCSGC 4 cut(s) 272, 358, 560, 806
TfiI GAWTC 6 cut(s) 17, 200, 637, 713, 1077, 1243
Tru1I TTAA 3 cut(s) 830, 893, 1357
Tru9I TTAA 3 cut(s) 830, 893, 1357
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 7 cut(s) 150, 246, 327, 330, 554, 1121, 1189
Tsp45I GTSAC 1 cut(s) 656
TspGWI ACGGA 2 cut(s) 193, 797
TspRI CASTG 1 cut(s) 661
VpaK11BI GGWCC 3 cut(s) 105, 114, 1021
XapI RAATTY 2 cut(s) 190, 445
XbaI TCTAGA 1 cut(s) 10
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XmnI GAANNNNTTC 2 cut(s) 38, 1305
XspI CTAG 2 cut(s) 11, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.