AT4G17910

GWT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005057
Physical Location & Seq
Reverse (-)
9951173 .. 9954236
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17910.4

Sequence Viewer

Length: 1305 bp
ATGACGTTTCTCTTGTTTCAGCTCTTGGTTCTATTACGATACTCCATTGGCTTCCACTGTAAAATTGATAACAATGGTGTTAAATCCGTTACATCGAAGAAAAACGACGATGAGAAAATTGTTATTTCCAGAAATTGGAAGGCTGCCATATCATTGGATTTCATCTTCATTGTCTTCCCCATGCTCCTCTTTTTCACTGTTCTATCAGAATGGGTTTATCATGGGACAGGCTTGTTGTCGTTGTTGGTACTGATTCTTTCTGTGACTGCCAAAAGATCTTTTTCAGGGTTGCAGAGAGGACAGTCTCTCTCGTTTAGAGCAAGTGTATCTTCTTATAGAGTTGCTCTGATGCTTATTACATGCTTGTGTATCTTGGCTGTTGACTTTACTATCTTTCCCAGAAGGTATGCCAAGACAGAGACTTATGGTACTAGCTTGATGGATCTTGGGGTTGGCTCTTTTGTGTTGGCTAATGCTGTTGTTTCTCGGCAAGCTAGAGACGTCTCATCAGGAAACTGGATAACTGGAATTAAAGCAACCGCTCCATTGCTATTACTCGGGTTTATTCGTCTTGTTACCACTTCAGGTGTGGATTATCAGGTCCACGTTACGGAATATGGAGTACACTGGAATTTCTTTTTCACACTTGCAGCCATATCAATTCTCACATCGTTTGTTAACATACCAGCCAAGTACTGTGGACTCCTAGGTTTCGCTGTTCTTGCAGGGTACCAAACTTGGTTGCTTAGTGGACTGAACACATATTTGCTTTCGGACGAAAGAGGAACTGACATTATCAGCAAAAACAAGGAAGGAGTATATAGCATTCTTGGTTATTGGGGCATGTACCTTCTTGGCGTTCACTTAGGTTATCGTCTCTTTTACGGAAAACATACAAATATTCGAAGCACCACAAGCTCAATCGCTAGAGTCTTTCTCGTTTCTCTTCTCTTATGGATTGTAACTATACTTTTTGACAACTACGTTGAGAGGATCTCCCGTCGAACGTGTAACATGCCTTACGTTACTTGGGTGCTTGCGCAAGATCTTCAGGCGTTGGGGATATTTATGCTGTCTAGTTACATACCTCTGAACAAGCTTTCATCACTTGAAGAAGCAATTGACCAAAATCTGTTAGCAACCTTTCTGCTTGCAAACCTTGTTACAGGAATGGTGAACCTCACCGTAGATACCATCTTTGCTTCTCCATTCTCTTCTCTTCTGATATTAACCGCTTACGCCTTTGCTTTATCTGCTATTATCGGAACCATTCATTTCTCCGGTTTCCGGTTAAAGTTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
GWT1

Protein Analysis

434

Amino Acids

48.52

Weight (kDa)

9.37

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GWT1 PF06423 13 - 453 2.1e-129 GWT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
Acc16I TGCGCA 1 cut(s) 1041
Acc65I GGTACC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 542
AciI CCGC 2 cut(s) 540, 1233
AclWI GGATC 2 cut(s) 450, 1001
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 2 cut(s) 567, 1034
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 6 cut(s) 249, 430, 624, 695, 731, 848
AfiI CCNNNNNNNGG 3 cut(s) 135, 610, 1287
AflIII ACRYGT 1 cut(s) 1007
AgsI TTSAA 1 cut(s) 1112
AluBI AGCT 5 cut(s) 22, 435, 494, 918, 1099
AluI AGCT 5 cut(s) 22, 435, 494, 918, 1099
Alw26I GTCTC 5 cut(s) 309, 413, 492, 508, 881
AlwI GGATC 2 cut(s) 450, 1001
Ama87I CYCGRG 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 143, 650
ApoI RAATTY 1 cut(s) 631
Asp718I GGTACC 1 cut(s) 729
AspA2I CCTAGG 1 cut(s) 706
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 1174, 1186
AsuII TTCGAA 1 cut(s) 904
AvaI CYCGRG 1 cut(s) 557
AvaII GGWCC 1 cut(s) 601
AvrII CCTAGG 1 cut(s) 706
BanI GGYRCC 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 2 cut(s) 130, 662
BccI CCATC 2 cut(s) 433, 1202
BcoDI GTCTC 5 cut(s) 309, 413, 492, 508, 881
BfaI CTAG 5 cut(s) 432, 495, 707, 927, 1077
BglII AGATCT 2 cut(s) 275, 1045
BisI GCNGC 2 cut(s) 144, 651
BlnI CCTAGG 1 cut(s) 706
BlsI GCNGC 2 cut(s) 145, 652
BmcAI AGTACT 1 cut(s) 695
Bme18I GGWCC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 2 cut(s) 731, 1267
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 166
BplI GAGNNNNNCTC 4 cut(s) 921, 953, 980, 1012
Bpu14I TTCGAA 1 cut(s) 904
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 706
BsaWI WCCGGW 2 cut(s) 1280, 1287
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 610, 1287
Bse1I ACTGG 3 cut(s) 521, 529, 632
Bse3DI GCAATG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 706
BseLI CCNNNNNNNGG 3 cut(s) 135, 610, 1287
BseMI GCAATG 1 cut(s) 545
BseNI ACTGG 3 cut(s) 521, 529, 632
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 130, 662
BshNI GGYRCC 1 cut(s) 729
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 2 cut(s) 1281, 1288
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 3 cut(s) 135, 610, 1287
BsmAI GTCTC 5 cut(s) 309, 413, 492, 508, 881
BsmBI CGTCTC 3 cut(s) 492, 508, 881
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 825
BsoBI CYCGRG 1 cut(s) 557
Bsp119I TTCGAA 1 cut(s) 904
Bsp143I GATC 4 cut(s) 275, 442, 993, 1045
BspACI CCGC 2 cut(s) 540, 1233
BspLI GGNNCC 2 cut(s) 731, 1267
BspPI GGATC 2 cut(s) 450, 1001
BspT104I TTCGAA 1 cut(s) 904
BspT107I GGYRCC 1 cut(s) 729
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 3 cut(s) 521, 529, 632
BssECI CCNNGG 1 cut(s) 706
BssMI GATC 4 cut(s) 275, 442, 993, 1045
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 706
Bst4CI ACNGT 5 cut(s) 59, 199, 303, 698, 1186
Bst6I CTCTTC 3 cut(s) 951, 1219, 1224
BstACI GRCGYC 1 cut(s) 501
BstBI TTCGAA 1 cut(s) 904
BstC8I GCNNGC 3 cut(s) 492, 1038, 1152
BstDEI CTNAG 2 cut(s) 746, 865
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 4 cut(s) 278, 445, 996, 1048
BstMAI GTCTC 5 cut(s) 309, 413, 492, 508, 881
BstMBI GATC 4 cut(s) 275, 442, 993, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 722, 915, 1253
BstNSI RCATGY 3 cut(s) 363, 847, 1018
BstV1I GCAGC 2 cut(s) 130, 662
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 4 cut(s) 275, 442, 993, 1045
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 4 cut(s) 275, 442, 993, 1045
BtsIMutI CAGTG 3 cut(s) 55, 195, 625
Cac8I GCNNGC 3 cut(s) 492, 1038, 1152
CfoI GCGC 1 cut(s) 1042
Cfr13I GGNCC 1 cut(s) 601
Csp6I GTAC 6 cut(s) 248, 429, 623, 694, 730, 847
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 5 cut(s) 181, 221, 360, 844, 1015
CviQI GTAC 6 cut(s) 248, 429, 623, 694, 730, 847
DdeI CTNAG 2 cut(s) 746, 865
DpnI GATC 4 cut(s) 277, 444, 995, 1047
DpnII GATC 4 cut(s) 275, 442, 993, 1045
Eam1104I CTCTTC 3 cut(s) 951, 1219, 1224
EarI CTCTTC 3 cut(s) 951, 1219, 1224
Eco130I CCWWGG 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 601
Eco57I CTGAAG 2 cut(s) 567, 1034
Eco88I CYCGRG 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 706
Esp3I CGTCTC 3 cut(s) 492, 508, 881
FaeI CATG 5 cut(s) 184, 224, 363, 847, 1018
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 1 cut(s) 238
FatI CATG 5 cut(s) 180, 220, 359, 843, 1014
Fnu4HI GCNGC 2 cut(s) 144, 651
Fsp4HI GCNGC 2 cut(s) 144, 651
FspBI CTAG 5 cut(s) 432, 495, 707, 927, 1077
FspI TGCGCA 1 cut(s) 1041
GlaI GCGC 1 cut(s) 1041
GluI GCNGC 2 cut(s) 144, 651
HapII CCGG 2 cut(s) 1281, 1288
HhaI GCGC 1 cut(s) 1042
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 5 cut(s) 184, 224, 363, 847, 1018
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HincII GTYRAC 2 cut(s) 382, 679
HindII GTYRAC 2 cut(s) 382, 679
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 3 cut(s) 253, 702, 930
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 2 cut(s) 1281, 1288
HphI GGTGA 2 cut(s) 1174, 1186
Hpy166II GTNNAC 8 cut(s) 382, 604, 625, 679, 701, 752, 862, 1177
Hpy188I TCNGA 6 cut(s) 208, 348, 775, 1092, 1224, 1265
Hpy188III TCNNGA 2 cut(s) 129, 510
Hpy8I GTNNAC 8 cut(s) 382, 604, 625, 679, 701, 752, 862, 1177
Hpy99I CGWCG 2 cut(s) 110, 1005
HpyAV CCTTC 4 cut(s) 133, 396, 806, 860
HpyCH4III ACNGT 5 cut(s) 59, 199, 303, 698, 1186
HpyCH4IV ACGT 6 cut(s) 5, 501, 606, 984, 1007, 1023
HpyCH4V TGCA 4 cut(s) 292, 650, 725, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 722, 915, 1253
HpyF3I CTNAG 2 cut(s) 746, 865
HpySE526I ACGT 6 cut(s) 5, 501, 606, 984, 1007, 1023
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 5 cut(s) 184, 224, 363, 847, 1018
HspAI GCGC 1 cut(s) 1040
KpnI GGTACC 1 cut(s) 733
KspAI GTTAAC 1 cut(s) 679
Kzo9I GATC 4 cut(s) 275, 442, 993, 1045
LmnI GCTCC 2 cut(s) 189, 547
Lsp1109I GCAGC 2 cut(s) 130, 662
LweI GCATC 1 cut(s) 339
MaeI CTAG 5 cut(s) 432, 495, 707, 927, 1077
MaeII ACGT 6 cut(s) 5, 501, 606, 984, 1007, 1023
MaeIII GTNAC 9 cut(s) 88, 262, 574, 607, 961, 1010, 1024, 1079, 1162
MalI GATC 4 cut(s) 277, 444, 995, 1047
MbiI CCGCTC 1 cut(s) 542
MboI GATC 4 cut(s) 275, 442, 993, 1045
MboII GAAGA 9 cut(s) 109, 157, 166, 321, 938, 1040, 1124, 1206, 1211
MfeI CAATTG 1 cut(s) 1119
MflI RGATCY 4 cut(s) 275, 442, 993, 1045
MluCI AATT 7 cut(s) 63, 117, 133, 528, 631, 660, 1119
MlyI GAGTC 2 cut(s) 696, 939
MnlI CCTC 6 cut(s) 197, 290, 776, 984, 1098, 1190
MseI TTAA 5 cut(s) 81, 531, 678, 1229, 1292
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 2 cut(s) 1281, 1288
MunI CAATTG 1 cut(s) 1119
Mva1269I GAATGC 1 cut(s) 825
MwoI GCNNNNNNNGC 3 cut(s) 722, 915, 1253
NdeII GATC 4 cut(s) 275, 442, 993, 1045
NlaIII CATG 5 cut(s) 184, 224, 363, 847, 1018
NlaIV GGNNCC 2 cut(s) 731, 1267
NmeAIII GCCGAG 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 262
NsbI TGCGCA 1 cut(s) 1041
NspI RCATGY 3 cut(s) 363, 847, 1018
NspV TTCGAA 1 cut(s) 904
PctI GAATGC 1 cut(s) 825
PfeI GAWTC 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 2 cut(s) 145, 652
PleI GAGTC 2 cut(s) 696, 938
PpsI GAGTC 2 cut(s) 696, 938
PspN4I GGNNCC 2 cut(s) 731, 1267
PspPI GGNCC 1 cut(s) 601
PsuI RGATCY 4 cut(s) 275, 442, 993, 1045
RsaI GTAC 6 cut(s) 249, 430, 624, 695, 731, 848
RsaNI GTAC 6 cut(s) 248, 429, 623, 694, 730, 847
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 5 cut(s) 81, 531, 678, 1229, 1292
SatI GCNGC 2 cut(s) 144, 651
Sau3AI GATC 4 cut(s) 275, 442, 993, 1045
Sau96I GGNCC 1 cut(s) 601
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 2 cut(s) 696, 939
SfaNI GCATC 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 904
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 1 cut(s) 364
Sse9I AATT 7 cut(s) 63, 117, 133, 528, 631, 660, 1119
SsiI CCGC 2 cut(s) 540, 1233
SspI AATATT 1 cut(s) 901
SspMI CTAG 5 cut(s) 432, 495, 707, 927, 1077
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 5 cut(s) 59, 199, 303, 698, 1186
TaiI ACGT 6 cut(s) 8, 504, 609, 987, 1010, 1026
TaqI TCGA 3 cut(s) 95, 904, 1003
TasI AATT 7 cut(s) 63, 117, 133, 528, 631, 660, 1119
TatI WGTACW 2 cut(s) 622, 693
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 5 cut(s) 81, 531, 678, 1229, 1292
Tru9I TTAA 5 cut(s) 81, 531, 678, 1229, 1292
TscAI CASTG 3 cut(s) 62, 202, 632
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 2 cut(s) 143, 650
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 4 cut(s) 151, 157, 1092, 1262
TspGWI ACGGA 3 cut(s) 76, 626, 900
TspRI CASTG 3 cut(s) 62, 202, 632
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 601
XapI RAATTY 1 cut(s) 631
XceI RCATGY 3 cut(s) 363, 847, 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmaJI CCTAGG 1 cut(s) 706
XspI CTAG 5 cut(s) 432, 495, 707, 927, 1077
ZraI GACGTC 1 cut(s) 502
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.