MD09G1215500.v1.1

GWT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0005057
Physical Location & Seq
Forward (+)
21289162 .. 21289537
376 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1215500.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGATTCTGTTCCCAACACCTTCAATCCAAACAAACGTCTCAAAGAAGAGTTTGTGAGCAATTTGAGTGGATCGTCGATGATGGAGATTGCCACACTTACGAGGATTTTGGCAGCCGGCATAAAAGGGTGGATGGGTTTTATTTTGAGGTGTATTCATAAGATTGTTGGAGAGGGGGGGGGGGGTGTTAATAGAATTACCCTTAAAATTTGGATAATACGACATTCCCCTGCTCACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
GWT1

Protein Analysis

81

Amino Acids

8.83

Weight (kDa)

10.17

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 241
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 207
AgsI TTSAA 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 207
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 76, 127
BcoDI GTCTC 1 cut(s) 44
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 116
BseGI GGATG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 71
BspPI GGATC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 118
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviJI RGCY 1 cut(s) 116
CviKI_1 RGCY 1 cut(s) 116
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 44
FaiI YATR 3 cut(s) 122, 159, 241
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HapII CCGG 1 cut(s) 117
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 37
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 125
MaeII ACGT 1 cut(s) 37
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 1 cut(s) 59
MluCI AATT 3 cut(s) 61, 195, 207
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 3 cut(s) 96, 141, 166
MroNI GCCGGC 1 cut(s) 116
MseI TTAA 2 cut(s) 189, 204
MspI CCGG 1 cut(s) 117
NaeI GCCGGC 1 cut(s) 118
NdeII GATC 1 cut(s) 71
NgoMIV GCCGGC 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 115
PsiI TTATAA 1 cut(s) 241
SaqAI TTAA 2 cut(s) 189, 204
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 71
SetI ASST 3 cut(s) 23, 40, 152
SgeI CNNG 2 cut(s) 114, 129
Sse9I AATT 3 cut(s) 61, 195, 207
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 77
TasI AATT 3 cut(s) 61, 195, 207
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 189, 204
Tru9I TTAA 2 cut(s) 189, 204
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 146
XapI RAATTY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.