Rh7AG252100

GWT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005057
Physical Location & Seq
Reverse (-)
25206953 .. 25215868
8916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG252100.1

Sequence Viewer

Length: 1173 bp
ATGGCTAGGCTGGCTGTGGATTTTCTATTCATTATGGTTCCATTTGTCTTAATTTTCACTGTCTTATCAGAGTGGATGTATATCTGGGCAACTTTGCTAATTCTGTTACTTGTTTTCAGCATTGCAGCCAGAAGTTTTGGTTTTGGTTCTACTTTGGAAGAAGAACCCGATTCTATTAGGACAAGTATTACATCATTTAGGGTCGCAACGATGATGCTAACATGCATATGTATCTTGGCTGTTGACTTCACAATTTTTCCTAGAAGATATGCCAAGACTGAGACTTATGGTACTGGCTGGATGGATCTCGGGGTTGGCTCATTTGTCGTAGCAAACTCATTTGTGTCTCGGCAAGCACGAAATTTATCATGGACGAAATGGAAGACTGCAATTCAATCTACTAGTCCACTAATCATCCTTGGGTTTGTTCGTCTTCTCTCTACTGCAGGTCTAGACTATCAGCATCATGCAGCTGAATATGGAGTACACTGGAATTTCTTTTTCACACTTGCTGCCATATCATTTCTTACATCCATAATTAATGTGCCCGCGCGGTATTCTGGAATTCTCGGTGCACTAATTCTAGTAGGTTACGAAGGTTGGTTGATGCAGGGGTTAAACACGTATCTGCTTTCTAATGAAAGGGGAAGTGATATAATTAGCCAAAATAAGGAGGGATTTTTTAGCATATTTGGATATTGGAGCATGTACCTCATTGGTGTCCAGGTGGGGAATTTTCTTTTTTTCAGTAACCACTCCTCTGCTACAACAAGAAGCCATAAATGGACAAGGAATAGAGCTGCAATGCTTTCACTTCTGTTTTGGCTAGTAACTGTGGTTATAGATAGCCATGTCCAGAGAGTTTCCCGTAGAATGTGCAATCTGGCTTATGTTACACTGGTATTGGCCGTAAATCTAGAGGGTATGGCCATAGTTCTGTTCTCTGATTGTTTCCCTGGAAGCAAAACATCAGTACTTGAAGAAGCATATAACCGCAATTTGCTAGCAATATTTCTTTTGGCAAATTTGCTTACTGGTCTGGTAAACTTTTTGGTGGATACCCTGTTTGCATCATCAGTCAAAGCTCTTTCTGTGATGATTGCCTATGCATTCACGTTAACTTTCATTCCTGGATTGCTAGACTTTTGCGGCATCCGATTTAGATTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
GWT1

Protein Analysis

390

Amino Acids

43.92

Weight (kDa)

8.95

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GWT1 PF06423 3 - 377 2.5e-119 GWT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 437
AccII CGCG 2 cut(s) 551, 553
AciI CCGC 4 cut(s) 549, 553, 994, 1149
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 2 cut(s) 906, 927
AcsI RAATTY 5 cut(s) 361, 493, 564, 733, 1024
AfaI GTAC 4 cut(s) 292, 486, 710, 975
AfiI CCNNNNNNNGG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 2 cut(s) 395, 980
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 3 cut(s) 723, 955, 1129
AluBI AGCT 3 cut(s) 473, 800, 1085
AluI AGCT 3 cut(s) 473, 800, 1085
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 275, 351
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 906, 927
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 4 cut(s) 125, 470, 512, 800
ApoI RAATTY 5 cut(s) 361, 493, 564, 733, 1024
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 553
AsuNHI GCTAGC 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 549, 577
BalI TGGCCA 1 cut(s) 929
BbsI GAAGAC 2 cut(s) 389, 425
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 4 cut(s) 137, 482, 499, 787
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 893
BciT130I CCWGG 3 cut(s) 725, 957, 1131
BciVI GTATCC 1 cut(s) 1051
BcoDI GTCTC 2 cut(s) 275, 351
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 9 cut(s) 6, 261, 402, 452, 584, 827, 917, 1004, 1139
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 437
BfuI GTATCC 1 cut(s) 1051
BisI GCNGC 5 cut(s) 126, 471, 513, 801, 1150
BlsI GCNGC 5 cut(s) 127, 472, 514, 802, 1151
BmcAI AGTACT 1 cut(s) 975
Bme1390I CCNGG 3 cut(s) 725, 957, 1131
BmeT110I CYCGRG 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 3 cut(s) 725, 957, 1131
BmsI GCATC 5 cut(s) 204, 472, 597, 1079, 1161
BmtI GCTAGC 1 cut(s) 1007
BpiI GAAGAC 2 cut(s) 389, 425
BsaAI YACGTR 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 418, 955
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse1I ACTGG 4 cut(s) 298, 494, 903, 1039
Bse3DI GCAATG 2 cut(s) 120, 810
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 3 cut(s) 725, 957, 1131
BseDI CCNNGG 2 cut(s) 418, 955
BseGI GGATG 5 cut(s) 81, 306, 414, 530, 1152
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 2 cut(s) 120, 810
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 4 cut(s) 298, 494, 903, 1039
BseRI GAGGAG 1 cut(s) 748
BseSI GKGCMC 2 cut(s) 549, 577
BseXI GCAGC 4 cut(s) 137, 482, 499, 787
Bsh1236I CGCG 2 cut(s) 551, 553
BshFI GGCC 2 cut(s) 908, 929
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 670
BsmAI GTCTC 2 cut(s) 275, 351
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 2 cut(s) 908, 929
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 549, 577
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 4 cut(s) 549, 553, 994, 1149
BspANI GGCC 2 cut(s) 908, 929
BspCNI CTCAG 1 cut(s) 271
BspFNI CGCG 2 cut(s) 551, 553
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 437
BspOI GCTAGC 1 cut(s) 1007
BspPI GGATC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 120, 810
BsrI ACTGG 4 cut(s) 298, 494, 903, 1039
BssECI CCNNGG 2 cut(s) 418, 955
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 418
Bst2UI CCWGG 3 cut(s) 725, 957, 1131
Bst4CI ACNGT 2 cut(s) 61, 835
BstBAI YACGTR 1 cut(s) 624
BstC8I GCNNGC 4 cut(s) 12, 354, 549, 1005
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 5 cut(s) 81, 306, 414, 530, 1152
BstFNI CGCG 2 cut(s) 551, 553
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 275, 351
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 725, 957, 1131
BstNSI RCATGY 2 cut(s) 225, 709
BstSCI CCNGG 3 cut(s) 723, 955, 1129
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 2 cut(s) 549, 577
BstUI CGCG 2 cut(s) 551, 553
BstV1I GCAGC 4 cut(s) 137, 482, 499, 787
BstV2I GAAGAC 2 cut(s) 389, 425
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuI GTATCC 1 cut(s) 1051
BsuRI GGCC 2 cut(s) 908, 929
BtsCI GGATG 5 cut(s) 81, 306, 414, 530, 1152
BtsIMutI CAGTG 3 cut(s) 57, 487, 896
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 12, 354, 549, 1005
CfoI GCGC 1 cut(s) 553
Csp6I GTAC 4 cut(s) 291, 485, 709, 974
CviAII CATG 5 cut(s) 222, 369, 467, 706, 851
CviQI GTAC 4 cut(s) 291, 485, 709, 974
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
EaeI YGGCCR 2 cut(s) 906, 927
Eco130I CCWWGG 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 564
EcoRII CCWGG 3 cut(s) 723, 955, 1129
EcoT14I CCWWGG 1 cut(s) 418
EcoT22I ATGCAT 2 cut(s) 227, 1111
ErhI CCWWGG 1 cut(s) 418
FaeI CATG 5 cut(s) 225, 372, 470, 709, 854
FatI CATG 5 cut(s) 221, 368, 466, 705, 850
FauI CCCGC 1 cut(s) 556
FauNDI CATATG 1 cut(s) 227
Fnu4HI GCNGC 5 cut(s) 126, 471, 513, 801, 1150
FokI GGATG 5 cut(s) 88, 313, 401, 517, 1139
Fsp4HI GCNGC 5 cut(s) 126, 471, 513, 801, 1150
FspBI CTAG 9 cut(s) 6, 261, 402, 452, 584, 827, 917, 1004, 1139
GlaI GCGC 1 cut(s) 552
GluI GCNGC 5 cut(s) 126, 471, 513, 801, 1150
HaeIII GGCC 2 cut(s) 908, 929
HhaI GCGC 1 cut(s) 553
Hin1II CATG 5 cut(s) 225, 372, 470, 709, 854
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 2 cut(s) 244, 1119
HindII GTYRAC 2 cut(s) 244, 1119
HinfI GANTC 1 cut(s) 170
HpaI GTTAAC 1 cut(s) 1119
Hpy166II GTNNAC 6 cut(s) 244, 407, 487, 575, 1045, 1119
Hpy188I TCNGA 3 cut(s) 70, 946, 1157
Hpy188III TCNNGA 4 cut(s) 452, 561, 856, 917
Hpy8I GTNNAC 6 cut(s) 244, 407, 487, 575, 1045, 1119
HpyAV CCTTC 1 cut(s) 590
HpyCH4III ACNGT 2 cut(s) 61, 835
HpyCH4IV ACGT 2 cut(s) 623, 1115
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 2 cut(s) 623, 1115
Hsp92II CATG 5 cut(s) 225, 372, 470, 709, 854
HspAI GCGC 1 cut(s) 551
KspAI GTTAAC 1 cut(s) 1119
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 702
Lsp1109I GCAGC 4 cut(s) 137, 482, 499, 787
LweI GCATC 5 cut(s) 204, 472, 597, 1079, 1161
MaeI CTAG 9 cut(s) 6, 261, 402, 452, 584, 827, 917, 1004, 1139
MaeII ACGT 2 cut(s) 623, 1115
MaeIII GTNAC 5 cut(s) 105, 590, 749, 829, 892
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 6 cut(s) 170, 173, 276, 394, 425, 992
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 549, 577
MlsI TGGCCA 1 cut(s) 929
MluNI TGGCCA 1 cut(s) 929
MnlI CCTC 4 cut(s) 667, 722, 769, 913
Mox20I TGGCCA 1 cut(s) 929
Mph1103I ATGCAT 2 cut(s) 227, 1111
MscI TGGCCA 1 cut(s) 929
MseI TTAA 4 cut(s) 50, 540, 617, 1118
MslI CAYNNNNRTG 1 cut(s) 226
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 1 cut(s) 473
MspR9I CCNGG 3 cut(s) 725, 957, 1131
Mva1269I GAATGC 1 cut(s) 1109
MvaI CCWGG 3 cut(s) 725, 957, 1131
MvnI CGCG 2 cut(s) 551, 553
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 227
NdeII GATC 1 cut(s) 304
NheI GCTAGC 1 cut(s) 1003
NlaIII CATG 5 cut(s) 225, 372, 470, 709, 854
NlaIV GGNNCC 1 cut(s) 39
NmeAIII GCCGAG 1 cut(s) 328
NsiI ATGCAT 2 cut(s) 227, 1111
NspI RCATGY 2 cut(s) 225, 709
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PctI GAATGC 1 cut(s) 1109
PfeI GAWTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 1129
PkrI GCNGC 5 cut(s) 127, 472, 514, 802, 1151
Ppu21I YACGTR 1 cut(s) 624
PshBI ATTAAT 1 cut(s) 540
Psp6I CCWGG 3 cut(s) 723, 955, 1129
PspGI CCWGG 3 cut(s) 723, 955, 1129
PspN4I GGNNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 4 cut(s) 292, 486, 710, 975
RsaNI GTAC 4 cut(s) 291, 485, 709, 974
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 4 cut(s) 50, 540, 617, 1118
SatI GCNGC 5 cut(s) 126, 471, 513, 801, 1150
Sau3AI GATC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 975
ScrFI CCNGG 3 cut(s) 725, 957, 1131
SduI GDGCHC 2 cut(s) 549, 577
SfaNI GCATC 5 cut(s) 204, 472, 597, 1079, 1161
SfcI CTRYAG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 226
SpeI ACTAGT 1 cut(s) 401
SsiI CCGC 4 cut(s) 549, 553, 994, 1149
SspI AATATT 1 cut(s) 1011
SspMI CTAG 9 cut(s) 6, 261, 402, 452, 584, 827, 917, 1004, 1139
StyD4I CCNGG 3 cut(s) 723, 955, 1129
StyI CCWWGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 61, 835
TaiI ACGT 2 cut(s) 626, 1118
TatI WGTACW 2 cut(s) 484, 973
TauI GCSGC 1 cut(s) 1152
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 4 cut(s) 50, 540, 617, 1118
Tru9I TTAA 4 cut(s) 50, 540, 617, 1118
TscAI CASTG 3 cut(s) 64, 494, 903
TseI GCWGC 4 cut(s) 125, 470, 512, 800
TspDTI ATGAA 3 cut(s) 19, 654, 1114
TspRI CASTG 3 cut(s) 64, 494, 903
VneI GTGCAC 1 cut(s) 573
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 5 cut(s) 361, 493, 564, 733, 1024
XbaI TCTAGA 2 cut(s) 451, 916
XceI RCATGY 2 cut(s) 225, 709
XspI CTAG 9 cut(s) 6, 261, 402, 452, 584, 827, 917, 1004, 1139
ZrmI AGTACT 1 cut(s) 975
Zsp2I ATGCAT 2 cut(s) 227, 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.