Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001656.1

Orthogroup ID

OG0005057

Physical Location & Seq

Genomic Coordinates Forward (+)

27417 .. 34630

Gene Structure 7214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001656.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atggattctgttcccaagtctttgaatccaaacaggcgtctcaaggaagaattcgtcagcaatttgactggatcttccatgctggaaatcgccgccatcaccacaataatcccagctctgtttctgctgcggcgagcagtcggcttcaatcgtcctgctgatgatgtcacattgaagaaaaatgatgatgcaaaagttggttctaagagttggcaggcttacatggctaggctggctgtggattttctcttcattatggttccatttgtcttaattttcactgtcttatcagagtggatgtatatctgggcaactttgctaattctgttgcttgttttcagcattgcagccagaagttctggttttggttctaatttggaagaacccgattctattaggacaagtattacatcatttagggtcgcaacgatgatgctaacatgcatatgtatcttggctgttgacttcacaatttttcctagaagatatgccaagactgagacttatggtactggctggatggatctcggggttggctcatttgtcgtagcaaactcatttgtgtctcggcaagcacgaaatttatcatggacgaaatggaagactgcaattcaatctactagtccactaatcatccttgggtttgttcgtcttctctctactgcaggtctagactatcagcatcatgcagctgaatatggagtacactggaatttctttttcacacttgctgccatatcatttcttacatccataattaatgtgcccgcgcggtattctggaattctcggtgcactaattctagtaggttacgaaggttggttgatgcaggggttaaacacgtatctgctttctaatgaaaggggaagtgatataattagccaaaataaggagggattttttagcatatttggatattggagcatgtacctcattggtgtccaggtggggaattttctttttttcagtaaccactcctctgctacaacaagaagccataaatggacaaggaatagagctgcaatgctttcacttctgttttggctagtaactgtggttatagatagccatgtccagagagtttcccgtagaatgtgcaatctggcttacgttacactggtattggccgtaaatctagagggtatggccatagttctgttctctgattgtttccctggaagcaaaacatcagtacttgaagaagcatataaccgcaatttgctagcaatatttcttttggcaaatttgcttactggtctggtaaactttttggtggataccctgtttgcatcatcagtcaaagctctttctgtgatgattgcctatgcattcactttaactttcattcctggattgctagacttttgcggcatccgatttagattttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GWT1

Protein Analysis

463

Amino Acids

51.93

Weight (kDa)

9.31

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17910 AT4G17910 AT4G17910 AT4G17910
fragaria_vesca	FvH4_5g22370 FvH4_5g22370 FvH4_5g22370 FvH4_5g22370 FvH4_5g22370
malus_domestica	MD00G1071700.v1.1 MD06G1036000.v1.1 MD06G1036200.v1.1 MD09G1215500.v1.1
prunus_persica	Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1
pyrus_communis	pycom06g02980
rosa_chinensis	RchiOBHm_Chr7g0210111
rosa_laevigata	RLG00000003064
rosa_multiflora	Rmu_sc0001656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00248610
rosa_rugosa	Rorug07G0118600
rosa_samantha	Rh7AG252100 Rh7BG246900 Rh7CG269100 Rh7DG259400
rosa_wichuraiana	Rw7G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
AccII	CGCG	2 cut(s)	770, 772
AciI	CCGC	6 cut(s)	93, 130, 768, 772, 1213, 1368
AclWI	GGATC	2 cut(s)	79, 531
AcoI	YGGCCR	2 cut(s)	1125, 1146
AcsI	RAATTY	6 cut(s)	50, 580, 712, 783, 952, 1243
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	4 cut(s)	511, 705, 929, 1194
AfiI	CCNNNNNNNGG	1 cut(s)	889
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	5 cut(s)	25, 148, 175, 614, 1199
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	3 cut(s)	942, 1174, 1348
AluBI	AGCT	4 cut(s)	116, 692, 1019, 1304
AluI	AGCT	4 cut(s)	116, 692, 1019, 1304
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	3 cut(s)	44, 494, 570
Alw44I	GTGCAC	1 cut(s)	792
AlwI	GGATC	2 cut(s)	79, 531
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	2 cut(s)	1125, 1146
ApaLI	GTGCAC	1 cut(s)	792
ApeKI	GCWGC	5 cut(s)	127, 347, 689, 731, 1019
ApoI	RAATTY	6 cut(s)	50, 580, 712, 783, 952, 1243
AseI	ATTAAT	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	1222
AvaI	CYCGRG	1 cut(s)	527
BaeGI	GKGCMC	2 cut(s)	768, 796
BalI	TGGCCA	1 cut(s)	1148
BbsI	GAAGAC	2 cut(s)	608, 644
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	5 cut(s)	114, 359, 701, 718, 1006
BccI	CCATC	2 cut(s)	104, 514
BceAI	ACGGC	1 cut(s)	1112
BciT130I	CCWGG	3 cut(s)	944, 1176, 1350
BciVI	GTATCC	1 cut(s)	1270
BcoDI	GTCTC	3 cut(s)	44, 494, 570
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	9 cut(s)	228, 480, 621, 671, 803, 1046, 1136, 1223, 1358
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	1270
BisI	GCNGC	8 cut(s)	93, 128, 131, 348, 690, 732, 1020, 1369
BlsI	GCNGC	8 cut(s)	94, 129, 132, 349, 691, 733, 1021, 1370
BmcAI	AGTACT	1 cut(s)	1194
Bme1390I	CCNGG	3 cut(s)	944, 1176, 1350
BmeT110I	CYCGRG	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	944, 1176, 1350
BmsI	GCATC	6 cut(s)	178, 423, 691, 816, 1298, 1380
BmtI	GCTAGC	1 cut(s)	1226
BpiI	GAAGAC	2 cut(s)	608, 644
BpuEI	CTTGAG	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	843
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	637, 1174
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	5 cut(s)	73, 517, 713, 1122, 1258
Bse3DI	GCAATG	2 cut(s)	342, 1029
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	3 cut(s)	944, 1176, 1350
BseDI	CCNNGG	2 cut(s)	637, 1174
BseGI	GGATG	5 cut(s)	303, 525, 633, 749, 1371
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMI	GCAATG	2 cut(s)	342, 1029
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	5 cut(s)	73, 517, 713, 1122, 1258
BseRI	GAGGAG	1 cut(s)	967
BseSI	GKGCMC	2 cut(s)	768, 796
BseXI	GCAGC	5 cut(s)	114, 359, 701, 718, 1006
BseYI	CCCAGC	1 cut(s)	112
Bsh1236I	CGCG	2 cut(s)	770, 772
BshFI	GGCC	2 cut(s)	1127, 1148
BsiHKAI	GWGCWC	1 cut(s)	796
BsiHKCI	CYCGRG	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmAI	GTCTC	3 cut(s)	44, 494, 570
BsmBI	CGTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	1328
BsnI	GGCC	2 cut(s)	1127, 1148
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	768, 796
Bsp143I	GATC	2 cut(s)	71, 523
BspACI	CCGC	6 cut(s)	93, 130, 768, 772, 1213, 1368
BspANI	GGCC	2 cut(s)	1127, 1148
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	2 cut(s)	770, 772
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	656
BspOI	GCTAGC	1 cut(s)	1226
BspPI	GGATC	2 cut(s)	79, 531
BsrDI	GCAATG	2 cut(s)	342, 1029
BsrI	ACTGG	5 cut(s)	73, 517, 713, 1122, 1258
BssECI	CCNNGG	2 cut(s)	637, 1174
BssMI	GATC	2 cut(s)	71, 523
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	3 cut(s)	944, 1176, 1350
Bst4CI	ACNGT	2 cut(s)	283, 1054
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	843
BstC8I	GCNNGC	6 cut(s)	135, 216, 234, 573, 768, 1224
BstDEI	CTNAG	2 cut(s)	204, 498
BstF5I	GGATG	5 cut(s)	303, 525, 633, 749, 1371
BstFNI	CGCG	2 cut(s)	770, 772
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	2 cut(s)	74, 526
BstMAI	GTCTC	3 cut(s)	44, 494, 570
BstMBI	GATC	2 cut(s)	71, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 233
BstNI	CCWGG	3 cut(s)	944, 1176, 1350
BstNSI	RCATGY	2 cut(s)	444, 928
BstSCI	CCNGG	3 cut(s)	942, 1174, 1348
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	2 cut(s)	768, 796
BstUI	CGCG	2 cut(s)	770, 772
BstV1I	GCAGC	5 cut(s)	114, 359, 701, 718, 1006
BstV2I	GAAGAC	2 cut(s)	608, 644
BstX2I	RGATCY	2 cut(s)	71, 523
BstYI	RGATCY	2 cut(s)	71, 523
BsuI	GTATCC	1 cut(s)	1270
BsuRI	GGCC	2 cut(s)	1127, 1148
BtsCI	GGATG	5 cut(s)	303, 525, 633, 749, 1371
BtsIMutI	CAGTG	3 cut(s)	279, 706, 1115
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	6 cut(s)	135, 216, 234, 573, 768, 1224
CfoI	GCGC	1 cut(s)	772
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	4 cut(s)	510, 704, 928, 1193
CviAII	CATG	7 cut(s)	79, 223, 441, 588, 686, 925, 1070
CviQI	GTAC	4 cut(s)	510, 704, 928, 1193
DdeI	CTNAG	2 cut(s)	204, 498
DpnI	GATC	2 cut(s)	73, 525
DpnII	GATC	2 cut(s)	71, 523
EaeI	YGGCCR	2 cut(s)	1125, 1146
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	637
Eco88I	CYCGRG	1 cut(s)	527
EcoRI	GAATTC	2 cut(s)	50, 783
EcoRII	CCWGG	3 cut(s)	942, 1174, 1348
EcoT14I	CCWWGG	1 cut(s)	637
EcoT22I	ATGCAT	2 cut(s)	446, 1330
ErhI	CCWWGG	1 cut(s)	637
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	7 cut(s)	82, 226, 444, 591, 689, 928, 1073
FatI	CATG	7 cut(s)	78, 222, 440, 587, 685, 924, 1069
FauI	CCCGC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	446
Fnu4HI	GCNGC	8 cut(s)	93, 128, 131, 348, 690, 732, 1020, 1369
FokI	GGATG	5 cut(s)	310, 532, 620, 736, 1358
Fsp4HI	GCNGC	8 cut(s)	93, 128, 131, 348, 690, 732, 1020, 1369
FspBI	CTAG	9 cut(s)	228, 480, 621, 671, 803, 1046, 1136, 1223, 1358
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	8 cut(s)	93, 128, 131, 348, 690, 732, 1020, 1369
GsaI	CCCAGC	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	1127, 1148
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	772
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	7 cut(s)	82, 226, 444, 591, 689, 928, 1073
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	3 cut(s)	5, 25, 389
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	5 cut(s)	463, 626, 706, 794, 1264
Hpy188I	TCNGA	3 cut(s)	292, 1165, 1376
Hpy188III	TCNNGA	4 cut(s)	671, 780, 1075, 1136
Hpy8I	GTNNAC	5 cut(s)	463, 626, 706, 794, 1264
HpyAV	CCTTC	1 cut(s)	809
HpyCH4III	ACNGT	2 cut(s)	283, 1054
HpyCH4IV	ACGT	2 cut(s)	842, 1110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 233
HpyF3I	CTNAG	2 cut(s)	204, 498
HpySE526I	ACGT	2 cut(s)	842, 1110
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	7 cut(s)	82, 226, 444, 591, 689, 928, 1073
HspAI	GCGC	1 cut(s)	770
Kzo9I	GATC	2 cut(s)	71, 523
LmnI	GCTCC	1 cut(s)	921
Lsp1109I	GCAGC	5 cut(s)	114, 359, 701, 718, 1006
LweI	GCATC	6 cut(s)	178, 423, 691, 816, 1298, 1380
MaeI	CTAG	9 cut(s)	228, 480, 621, 671, 803, 1046, 1136, 1223, 1358
MaeII	ACGT	2 cut(s)	842, 1110
MaeIII	GTNAC	5 cut(s)	166, 809, 968, 1048, 1111
MalI	GATC	2 cut(s)	73, 525
MboI	GATC	2 cut(s)	71, 523
MboII	GAAGA	9 cut(s)	59, 66, 187, 241, 392, 495, 613, 644, 1211
MflI	RGATCY	2 cut(s)	71, 523
MhlI	GDGCHC	2 cut(s)	768, 796
MlsI	TGGCCA	1 cut(s)	1148
MluNI	TGGCCA	1 cut(s)	1148
MnlI	CCTC	4 cut(s)	886, 941, 988, 1132
Mox20I	TGGCCA	1 cut(s)	1148
Mph1103I	ATGCAT	2 cut(s)	446, 1330
MscI	TGGCCA	1 cut(s)	1148
MseI	TTAA	4 cut(s)	272, 759, 836, 1337
MslI	CAYNNNNRTG	1 cut(s)	445
Msp20I	TGGCCA	1 cut(s)	1148
MspA1I	CMGCKG	1 cut(s)	692
MspR9I	CCNGG	3 cut(s)	944, 1176, 1350
Mva1269I	GAATGC	1 cut(s)	1328
MvaI	CCWGG	3 cut(s)	944, 1176, 1350
MvnI	CGCG	2 cut(s)	770, 772
MwoI	GCNNNNNNNGC	2 cut(s)	224, 233
NdeI	CATATG	1 cut(s)	446
NdeII	GATC	2 cut(s)	71, 523
NheI	GCTAGC	1 cut(s)	1222
NlaIII	CATG	7 cut(s)	82, 226, 444, 591, 689, 928, 1073
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	2 cut(s)	446, 1330
NspI	RCATGY	2 cut(s)	444, 928
PcsI	WCGNNNNNNNCGW	1 cut(s)	574
PctI	GAATGC	1 cut(s)	1328
PfeI	GAWTC	3 cut(s)	5, 25, 389
PfoI	TCCNGGA	1 cut(s)	1348
PkrI	GCNGC	8 cut(s)	94, 129, 132, 349, 691, 733, 1021, 1370
Ppu21I	YACGTR	1 cut(s)	843
PshBI	ATTAAT	1 cut(s)	759
Psp6I	CCWGG	3 cut(s)	942, 1174, 1348
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	3 cut(s)	942, 1174, 1348
PspN4I	GGNNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	71, 523
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	4 cut(s)	511, 705, 929, 1194
RsaNI	GTAC	4 cut(s)	510, 704, 928, 1193
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	4 cut(s)	272, 759, 836, 1337
SatI	GCNGC	8 cut(s)	93, 128, 131, 348, 690, 732, 1020, 1369
Sau3AI	GATC	2 cut(s)	71, 523
ScaI	AGTACT	1 cut(s)	1194
ScrFI	CCNGG	3 cut(s)	944, 1176, 1350
SduI	GDGCHC	2 cut(s)	768, 796
SfaNI	GCATC	6 cut(s)	178, 423, 691, 816, 1298, 1380
SfcI	CTRYAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	620
SsiI	CCGC	6 cut(s)	93, 130, 768, 772, 1213, 1368
SspI	AATATT	1 cut(s)	1230
SspMI	CTAG	9 cut(s)	228, 480, 621, 671, 803, 1046, 1136, 1223, 1358
StyD4I	CCNGG	3 cut(s)	942, 1174, 1348
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	2 cut(s)	283, 1054
TaiI	ACGT	2 cut(s)	845, 1113
TatI	WGTACW	2 cut(s)	703, 1192
TauI	GCSGC	3 cut(s)	95, 133, 1371
TfiI	GAWTC	3 cut(s)	5, 25, 389
Tru1I	TTAA	4 cut(s)	272, 759, 836, 1337
Tru9I	TTAA	4 cut(s)	272, 759, 836, 1337
TscAI	CASTG	3 cut(s)	286, 713, 1122
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	5 cut(s)	127, 347, 689, 731, 1019
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	241, 873, 1333
TspRI	CASTG	3 cut(s)	286, 713, 1122
VneI	GTGCAC	1 cut(s)	792
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	6 cut(s)	50, 580, 712, 783, 952, 1243
XbaI	TCTAGA	2 cut(s)	670, 1135
XceI	RCATGY	2 cut(s)	444, 928
XspI	CTAG	9 cut(s)	228, 480, 621, 671, 803, 1046, 1136, 1223, 1358
ZrmI	AGTACT	1 cut(s)	1194
Zsp2I	ATGCAT	2 cut(s)	446, 1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.