Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005057

Physical Location & Seq

Genomic Coordinates Reverse (-)

3780535 .. 3781680

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGATTCTCTTCCCAACACCTTCAATCCAAACAAACGTCTGAAAGAAGAGTTTGTGAGCAATTTGAGTGGATCGTCGATGATGGAGATTGCCGCGCTTACCACGATAATACCTATTCTGATACTTCTCCGGCACTCAGTTGGCTCTCATCGTGCCGTCGATGTCGTATCGAAGAAAAATGATGATGCAGTAGTTGGTTCTAAGGGATGGGCAGCTTACATGGCTTCAATGTCTCTTGATTTTCTTCTCATTATAGTTCCAATCGTCTTAGTTTACACTAGTGGATGTATATCTGGGCAACTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GWT1

Protein Analysis

103

Amino Acids

11.01

Weight (kDa)

6.7

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17910 AT4G17910 AT4G17910 AT4G17910
fragaria_vesca	FvH4_5g22370 FvH4_5g22370 FvH4_5g22370 FvH4_5g22370 FvH4_5g22370
malus_domestica	MD00G1071700.v1.1 MD06G1036000.v1.1 MD06G1036200.v1.1 MD09G1215500.v1.1
prunus_persica	Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1
pyrus_communis	pycom06g02980
rosa_chinensis	RchiOBHm_Chr7g0210111
rosa_laevigata	RLG00000003064
rosa_multiflora	Rmu_sc0001656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00248610
rosa_rugosa	Rorug07G0118600
rosa_samantha	Rh7AG252100 Rh7BG246900 Rh7CG269100 Rh7DG259400
rosa_wichuraiana	Rw7G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	25, 228
AhlI	ACTAGT	1 cut(s)	278
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	76, 201
BceAI	ACGGC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	237
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	93, 213
BlsI	GCNGC	2 cut(s)	94, 214
BmsI	GCATC	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	289
BseGI	GGATG	2 cut(s)	212, 290
BseJI	GATNNNNATC	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	95
BspPI	GGATC	1 cut(s)	79
BssMI	GATC	1 cut(s)	71
Bst6I	CTCTTC	2 cut(s)	15, 42
BstDEI	CTNAG	3 cut(s)	136, 201, 268
BstF5I	GGATG	2 cut(s)	212, 290
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	212, 290
CfoI	GCGC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	3 cut(s)	144, 215, 224
CviKI_1	RGCY	3 cut(s)	144, 215, 224
DdeI	CTNAG	3 cut(s)	136, 201, 268
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	15, 42
EarI	CTCTTC	2 cut(s)	15, 42
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	221, 254, 290
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	93, 213
FokI	GGATG	2 cut(s)	219, 297
Fsp4HI	GCNGC	2 cut(s)	93, 213
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	2 cut(s)	93, 213
HapII	CCGG	1 cut(s)	130
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	42, 120
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	79, 161
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	3 cut(s)	136, 201, 268
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	71
LpnPI	CCDG	2 cut(s)	143, 279
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	37
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	3 cut(s)	59, 184, 236
MluCI	AATT	1 cut(s)	61
MspI	CCGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	94, 214
SatI	GCNGC	2 cut(s)	93, 213
Sau3AI	GATC	1 cut(s)	71
SetI	ASST	4 cut(s)	23, 40, 115, 217
SfaNI	GCATC	1 cut(s)	175
SgeI	CNNG	7 cut(s)	106, 115, 142, 164, 232, 248, 291
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	1 cut(s)	279
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	3 cut(s)	77, 159, 170
TasI	AATT	1 cut(s)	61
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	212
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.