Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005057

Physical Location & Seq

Genomic Coordinates Forward (+)

13884886 .. 13893408

Gene Structure 8523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1071700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCATATTATATTCACTATGATCATAACTCATGTCAGGTTTTGGCAGAGTGGATGTATATCTGGGCGACTTTGTTGATGTTGTTACTGCTTTTCAGTATTGCAGCAAAAAGGTTTGGTTCTTATTCTACTTTGAAGGAGGATCCTTATTCTATAAGGCAAAATGTTTCGTCTTACAGAGTTGCTACGATGATCATCACATGCCTTTGTATCTTGACTGTTGACTTCAGAATATTCCCTAGAAGATATGCCAAGACTGAGACTTATGGTACGGGCTGGGTAAGAATTTTGCAAGCAATATGGAACGAAACTGCGATCTTCTTAAGCCTATTGTTACAGTCATGGAAGACTGCTATTCAATCTGCTAGTCCACTAATCATCCTTGGGTTTGCCCGTCTTCTCTCTACGACAGGTGTGGACTATCAGGTTCATGTGGTTGAATATGGAGTGCATTCGAATTTCCTTTTCACACTTGCTGGGGTATCAATTCTTACATCCATAATTAATGTTCCCGCACAGTATTCTGGCATTCTTGGTTCGTTAATTCTAGTAGGTTACCAAGTTTGCTTGATGCATGGGTTAAACTCATATCTGCTTTCTAATGAAAGGGGAGCTGATATAATCAGCCAAAATAAGGAGGGGTTTTTTAGCATATTTGGATATTGGGGTATGTACCTTGTTGGTGTCCAGTTGGGAAACTTTCTTCTATTCAATAACCATTCCTCTGCTACATTAAGAAGCAATAAATGGGCGAAGATTAGAGTCTGGATACTTTCACTTCTCCTTTGGTATGTGTTGGCAATACTGCTGGTCTCTGATTTTCTCCCCGGAAGTAAAACTTCAGCGCTTGAAGAAGTGTATAATCGCAATTTGCTCGGGACGTTTCTTCTGGCGAATTTGCTCACGGGTTTGGTGAACTTGATGGTGGATACCCTGTTTGCATCGGCAGTCAAAGCCTTTTTTATATTAATTGCCTATACATTTTCGCTGACTTTCATCGTTGGTTTCCTATATTTTTGCGGCATCCGGTTGAAATTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

GWT1

Protein Analysis

348

Amino Acids

39.37

Weight (kDa)

9.09

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GWT1	PF06423	11 - 268	7.2e-64	GWT1
GWT1	PF06423	279 - 336	8.1e-15	GWT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17910 AT4G17910 AT4G17910 AT4G17910
fragaria_vesca	FvH4_5g22370 FvH4_5g22370 FvH4_5g22370 FvH4_5g22370 FvH4_5g22370
malus_domestica	MD00G1071700.v1.1 MD06G1036000.v1.1 MD06G1036200.v1.1 MD09G1215500.v1.1
prunus_persica	Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1 Prupe.5G033200_v2.0.a1
pyrus_communis	pycom06g02980
rosa_chinensis	RchiOBHm_Chr7g0210111
rosa_laevigata	RLG00000003064
rosa_multiflora	Rmu_sc0001656.1_g000006
rosa_roxburghii	Rroxscaffold_3G00248610
rosa_rugosa	Rorug07G0118600
rosa_samantha	Rh7AG252100 Rh7BG246900 Rh7CG269100 Rh7DG259400
rosa_wichuraiana	Rw7G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	513, 1020
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	4 cut(s)	285, 457, 895, 1034
AcuI	CTGAAG	2 cut(s)	211, 825
AfaI	GTAC	2 cut(s)	271, 674
AfeI	AGCGCT	1 cut(s)	846
AfiI	CCNNNNNNNGG	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	322
AgsI	TTSAA	6 cut(s)	136, 359, 440, 712, 851, 1033
AluBI	AGCT	1 cut(s)	614
AluI	AGCT	1 cut(s)	614
Alw26I	GTCTC	2 cut(s)	254, 817
AlwI	GGATC	2 cut(s)	137, 150
Ama87I	CYCGRG	1 cut(s)	875
Aor51HI	AGCGCT	1 cut(s)	846
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	4 cut(s)	285, 457, 895, 1034
AseI	ATTAAT	2 cut(s)	504, 968
AspLEI	GCGC	1 cut(s)	847
AsuC2I	CCSGG	1 cut(s)	828
AsuHPI	GGTGA	1 cut(s)	925
AsuII	TTCGAA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	875
BamHI	GGATCC	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	353, 389
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	916
BcgI	CGANNNNNNTGC	2 cut(s)	856, 890
BciVI	GTATCC	2 cut(s)	762, 922
BclI	TGATCA	2 cut(s)	22, 192
BcnI	CCSGG	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	254, 817
BfaI	CTAG	3 cut(s)	240, 366, 548
BfoI	RGCGCY	1 cut(s)	848
BfrI	CTTAAG	1 cut(s)	322
BfuI	GTATCC	2 cut(s)	762, 922
BisI	GCNGC	2 cut(s)	105, 1021
BlsI	GCNGC	2 cut(s)	106, 1022
Bme1390I	CCNGG	1 cut(s)	828
BmeT110I	CYCGRG	1 cut(s)	875
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	828
BmsI	GCATC	3 cut(s)	561, 950, 1032
BpiI	GAAGAC	2 cut(s)	353, 389
Bpu14I	TTCGAA	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	828
BsaBI	GATNNNNATC	2 cut(s)	59, 194
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	382, 826
BsaWI	WCCGGW	1 cut(s)	1026
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	1 cut(s)	688
Bse8I	GATNNNNATC	2 cut(s)	59, 194
BseDI	CCNNGG	2 cut(s)	382, 826
BseGI	GGATG	4 cut(s)	60, 378, 494, 1023
BseJI	GATNNNNATC	2 cut(s)	59, 194
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	688
BseXI	GCAGC	1 cut(s)	116
BseYI	CCCAGC	2 cut(s)	276, 476
BsiHKCI	CYCGRG	1 cut(s)	875
BsiSI	CCGG	2 cut(s)	828, 1027
BslFI	GGGAC	1 cut(s)	892
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	254, 817
BsmFI	GGGAC	1 cut(s)	892
BsmI	GAATGC	2 cut(s)	451, 528
Bso31I	GGTCTC	1 cut(s)	817
BsoBI	CYCGRG	1 cut(s)	875
Bsp119I	TTCGAA	1 cut(s)	455
Bsp143I	GATC	4 cut(s)	22, 142, 192, 315
BspACI	CCGC	2 cut(s)	513, 1020
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	137, 150
BspT104I	TTCGAA	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	817
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	382, 826
BssMI	GATC	4 cut(s)	22, 142, 192, 315
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	3 cut(s)	220, 339, 519
BstAFI	CTTAAG	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	554
BstF5I	GGATG	4 cut(s)	60, 378, 494, 1023
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	4 cut(s)	25, 145, 195, 318
BstMAI	GTCTC	2 cut(s)	254, 817
BstMBI	GATC	4 cut(s)	22, 142, 192, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	953
BstNSI	RCATGY	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	826
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	2 cut(s)	353, 389
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	2 cut(s)	762, 922
BtsCI	GGATG	4 cut(s)	60, 378, 494, 1023
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	847
Csp6I	GTAC	2 cut(s)	270, 673
CviAII	CATG	5 cut(s)	33, 201, 342, 431, 575
CviJI	RGCY	5 cut(s)	276, 327, 614, 627, 956
CviKI_1	RGCY	5 cut(s)	276, 327, 614, 627, 956
CviQI	GTAC	2 cut(s)	270, 673
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	24, 144, 194, 317
DpnII	GATC	4 cut(s)	22, 142, 192, 315
Eco130I	CCWWGG	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	846
Eco57I	CTGAAG	2 cut(s)	211, 825
Eco88I	CYCGRG	1 cut(s)	875
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	5 cut(s)	36, 204, 345, 434, 578
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	1 cut(s)	892
FatI	CATG	5 cut(s)	32, 200, 341, 430, 574
FauI	CCCGC	1 cut(s)	520
FbaI	TGATCA	2 cut(s)	22, 192
Fnu4HI	GCNGC	2 cut(s)	105, 1021
FokI	GGATG	4 cut(s)	67, 365, 481, 1010
Fsp4HI	GCNGC	2 cut(s)	105, 1021
FspBI	CTAG	3 cut(s)	240, 366, 548
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	2 cut(s)	105, 1021
GsaI	CCCAGC	2 cut(s)	280, 480
HaeII	RGCGCY	1 cut(s)	848
HapII	CCGG	2 cut(s)	828, 1027
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	5 cut(s)	36, 204, 345, 434, 578
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	762
HpaII	CCGG	2 cut(s)	828, 1027
HphI	GGTGA	1 cut(s)	925
Hpy166II	GTNNAC	4 cut(s)	223, 371, 418, 916
Hpy188I	TCNGA	2 cut(s)	230, 817
Hpy188III	TCNNGA	3 cut(s)	214, 766, 877
Hpy8I	GTNNAC	4 cut(s)	223, 371, 418, 916
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	3 cut(s)	220, 339, 519
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	5 cut(s)	104, 292, 451, 574, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	953
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	881
Hsp92II	CATG	5 cut(s)	36, 204, 345, 434, 578
HspAI	GCGC	1 cut(s)	845
Ksp22I	TGATCA	2 cut(s)	22, 192
Kzo9I	GATC	4 cut(s)	22, 142, 192, 315
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	3 cut(s)	561, 950, 1032
MaeI	CTAG	3 cut(s)	240, 366, 548
MaeII	ACGT	1 cut(s)	881
MaeIII	GTNAC	3 cut(s)	84, 333, 554
MalI	GATC	4 cut(s)	24, 144, 194, 317
MboI	GATC	4 cut(s)	22, 142, 192, 315
MboII	GAAGA	8 cut(s)	255, 310, 358, 389, 695, 766, 863, 878
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	9 cut(s)	285, 457, 486, 501, 543, 868, 895, 969, 1034
MlyI	GAGTC	1 cut(s)	771
MnlI	CCTC	3 cut(s)	133, 631, 733
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	6 cut(s)	323, 504, 542, 581, 734, 968
MspCI	CTTAAG	1 cut(s)	322
MspI	CCGG	2 cut(s)	828, 1027
MspR9I	CCNGG	1 cut(s)	828
Mva1269I	GAATGC	2 cut(s)	451, 528
MwoI	GCNNNNNNNGC	1 cut(s)	953
NciI	CCSGG	1 cut(s)	828
NdeII	GATC	4 cut(s)	22, 142, 192, 315
NlaIII	CATG	5 cut(s)	36, 204, 345, 434, 578
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	455
PctI	GAATGC	2 cut(s)	451, 528
PkrI	GCNGC	2 cut(s)	106, 1022
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
PshBI	ATTAAT	2 cut(s)	504, 968
PspEI	GGTNACC	1 cut(s)	554
PspFI	CCCAGC	2 cut(s)	276, 476
PspN4I	GGNNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	271, 674
RsaNI	GTAC	2 cut(s)	270, 673
SaqAI	TTAA	6 cut(s)	323, 504, 542, 581, 734, 968
SatI	GCNGC	2 cut(s)	105, 1021
Sau3AI	GATC	4 cut(s)	22, 142, 192, 315
SchI	GAGTC	1 cut(s)	771
ScrFI	CCNGG	1 cut(s)	828
SetI	ASST	8 cut(s)	42, 116, 415, 429, 556, 616, 678, 884
SfaNI	GCATC	3 cut(s)	561, 950, 1032
SfuI	TTCGAA	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	9 cut(s)	285, 457, 486, 501, 543, 868, 895, 969, 1034
SsiI	CCGC	2 cut(s)	513, 1020
SspI	AATATT	1 cut(s)	234
SspMI	CTAG	3 cut(s)	240, 366, 548
StyD4I	CCNGG	1 cut(s)	826
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	3 cut(s)	220, 339, 519
TaiI	ACGT	1 cut(s)	884
TaqI	TCGA	1 cut(s)	455
TasI	AATT	9 cut(s)	285, 457, 486, 501, 543, 868, 895, 969, 1034
TauI	GCSGC	1 cut(s)	1023
Tru1I	TTAA	6 cut(s)	323, 504, 542, 581, 734, 968
Tru9I	TTAA	6 cut(s)	323, 504, 542, 581, 734, 968
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	419, 618, 985
Vha464I	CTTAAG	1 cut(s)	322
VspI	ATTAAT	2 cut(s)	504, 968
XapI	RAATTY	4 cut(s)	285, 457, 895, 1034
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	3 cut(s)	240, 366, 548
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.