AT4G18130

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007664
Physical Location & Seq
Reverse (-)
10042137 .. 10046346
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18130.1

Sequence Viewer

Length: 3339 bp
ATGGGATTCGAGAGTTCAAGCTCAGCTGCAAGCAACATGAAACCTCAACCTCAAAAATCCAACACTGCTCAATACTCTGTTGATGCTGCTCTCTTTGCTGATTTCGCTCAATCCATTTACACCGGCAAGTCTTTTAACTACTCCAAATCTGTTATTTCACCTCCCAATCACGTTCCTGATGAACACATCACAGCTTACTTGTCTAACATCCAAAGAGGCGGTCTAGTTCAGCCCTTTGGTTGTTTGATTGCTGTCGAAGAACCTAGTTTTAGGATACTTGGTCTTAGTGACAACTCTTCTGACTTTCTTGGTTTGTTGTCTCTTCCTTCCACCTCCCATTCTGGTGAGTTTGATAAAGTCAAGGGTTTGATTGGAATCGATGCAAGGACGCTTTTTACTCCTTCCTCTGGAGCTTCTTTGTCTAAAGCTGCTTCCTTTACTGAGATTTCCTTGTTGAATCCTGTTTTGGTCCATTCTAGGACGACCCAGAAGCCTTTTTATGCTATTCTTCACAGGATTGATGCAGGGATTGTCATGGATTTGGAGCCTGCTAAATCAGGTGATCCGGCTTTGACCCTTGCAGGCGCAGTTCAGTCTCAGAAGCTAGCCGTTAGGGCCATTTCTAGGCTGCAGTCACTTCCCGGAGGAGATATTGGTGCCTTGTGTGATACTGTTGTGGAAGATGTTCAGAGACTTACCGGTTATGACCGTGTTATGGTCTATCAGTTTCATGAAGATGATCATGGTGAAGTTGTTTCTGAGATTAGAAGGTCTGATTTGGAGCCTTATTTGGGTTTACATTATCCGGCAACAGATATTCCTCAGGCTGCTCGGTTCTTGTTCAAACAGAACCGTGTCCGAATGATTTGTGACTGCAATGCAACTCCGGTTAAGGTTGTTCAGAGTGAGGAACTCAAGAGACCACTTTGTTTAGTTAATTCTACTCTAAGAGCTCCTCATGGCTGCCATACGCAGTATATGGCGAATATGGGCTCTGTAGCTTCTCTTGCACTCGCAATTGTAGTAAAAGGCAAAGATTCGAGCAAGCTTTGGGGATTAGTTGTTGGTCATCATTGTTCTCCTAGATACGTTCCATTCCCGTTGCGGTATGCTTGTGAGTTTCTGATGCAAGCATTTGGGCTTCAGCTTCAAATGGAACTTCAGTTAGCATCACAGTTAGCCGAGAAGAAGGCTATGCGGACGCAGACCTTGTTGTGCGATATGCTTCTCCGTGATACTGTTTCCGCTATTGTTACACAATCTCCGGGTATTATGGACCTTGTGAAATGTGATGGAGCTGCGTTATATTACAAGGGGAAATGTTGGTTGGTTGGTGTTACTCCTAATGAGTCACAAGTTAAAGACTTGGTGAATTGGCTGGTGGAGAATCACGGTGATGATTCGACGGGTTTAACCACTGATAGTTTGGTGGATGCGGGATACCCTGGTGCCATCTCACTTGGAGATGCCGTTTGTGGTGTGGCTGCCGCAGGATTTTCTTCAAAAGATTACTTACTTTGGTTCAGGTCCAATACTGCAAGTGCAATCAAATGGGGAGGAGCTAAACATCATCCAAAGGATAAAGATGATGCCGGAAGAATGCATCCGAGGTCATCGTTTACAGCCTTTCTTGAAGTTGCGAAGAGCAGGAGCTTGCCGTGGGAAATCTCAGAAATTGATGCTATCCATTCCCTGAGACTTATAATGAGAGAGTCATTTACCAGCTCTAGGCCAGTTTTGTCTGGTAATGGCGTAGCAAGAGATGCTAATGAGCTTACTTCTTTTGTGTGTGAAATGGTTAGGGTGATTGAAACCGCAACTGCACCTATTTTTGGGGTTGATTCATCCGGATGTATTAATGGTTGGAACAAGAAAACCGCTGAAATGACGGGATTACTAGCTAGTGAAGCAATGGGGAAGTCACTTGCCGATGAGATTGTTCAAGAGGAATCACGCGCAGCTCTTGAAAGTCTCTTGTGCAAAGCCCTACAAGGTGAAGAGGAGAAAAGTGTAATGCTGAAACTGAGAAAGTTTGGTCAAAACAATCATCCGGATTATTCTTCTGATGTGTGTGTTCTCGTTAACTCCTGCACGAGTCGGGATTATACTGAAAATATCATCGGTGTCTGCTTCGTTGGTCAAGACATCACTAGTGAGAAAGCAATAACAGATAGATTCATCAGATTGCAAGGAGATTACAAGACTATTGTTCAAAGCTTAAATCCTTTGATTCCACCGATATTTGCTTCAGATGAAAATGCTTGTTGTTCTGAGTGGAACGCAGCAATGGAAAAGCTTACGGGATGGTCAAAACACGAGGTGATTGGGAAAATGCTACCCGGTGAAGTCTTTGGAGTCTTTTGTAAAGTGAAATGCCAAGATTCGCTCACAAAGTTCTTGATCTCTCTGTACCAAGGAATTGCTGGTGATAATGTTCCCGAGAGTTCACTGGTTGAGTTCTTTAATAAGGAAGGGAAGTACATAGAAGCATCCTTAACCGCGAACAAGAGTACAAACATCGAAGGAAAAGTTATAAGATGTTTCTTCTTCTTGCAGATTATCAATAAGGAATCGGGGTTGAGCTGCCCAGAACTGAAAGAGAGCGCTCAAAGCCTCAACGAATTAACTTACGTAAGACAAGAAATCAAGAATCCTCTCAACGGTATCCGATTTGCACATAAGCTTCTTGAATCCTCAGAGATTTCAGCTAGCCAAAGGCAGTTTCTGGAGACTAGTGATGCTTGTGAGAAGCAAATCACGACAATAATCGAAAGCACGGACTTGAAAAGCATTGAGGAAGGCAAGTTGCAATTGGAAACAGAAGAGTTTCGACTTGAAAACATCTTGGACACAATCATTAGCCAAGTGATGATTATATTGAGAGAGAGGAACTCACAACTAAGGGTTGAAGTCGCCGAGGAGATCAAAACTCTGCCTCTCAATGGTGACAGAGTCAAGCTCCAGCTTATTCTTGCTGATCTTCTACGCAACATTGTGAATCATGCGCCGTTTCCAAATAGTTGGGTAGGTATCAGTATCTCACCAGGGCAGGAGCTTTCACGTGACAATGGTCGCTATATCCATCTACAGTTCAGGATGATACATCCGGGGAAAGGACTTCCTTCAGAGATGCTAAGTGATATGTTTGAGACTCGAGATGGATGGGTCACCCCTGATGGTTTAGGGCTTAAGCTTTCGCGGAAACTATTGGAGCAGATGAATGGCCGTGTGAGTTATGTCCGAGAAGACGAACGGTGTTTCTTTCAGGTGGATCTTCAAGTGAAGACAATGTTAGGTGTTGAGTCAAGAGGAACAGAGGGTAGTTCAAGCATAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1112

Amino Acids

122.51

Weight (kDa)

5.76

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 65 - 184 1.7e-33 PAS fold
GAF PF01590 217 - 386 5.6e-17 GAF domain
PHY PF00360 400 - 575 1.6e-56 Phytochrome region
PAS PF00989 598 - 716 4.2e-24 PAS fold
PAS_4 PF08448 607 - 720 3.1e-06 PAS fold
PAS PF00989 732 - 852 5.7e-15 PAS fold
HisKA PF00512 874 - 934 3.6e-10 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 982 - 1093 2.2e-10 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1703, 2534
AccB1I GGYRCC 2 cut(s) 656, 1448
AccII CGCG 3 cut(s) 1956, 2501, 3199
AccIII TCCGGA 2 cut(s) 1847, 2050
AclWI GGATC 2 cut(s) 557, 3279
AcoI YGGCCR 1 cut(s) 3223
AcuI CTGAAG 4 cut(s) 1127, 1145, 2232, 3108
AcvI CACGTG 1 cut(s) 3062
AdeI CACNNNGTG 1 cut(s) 2320
AfaI GTAC 3 cut(s) 2411, 2480, 2512
AfeI AGCGCT 1 cut(s) 2605
AfiI CCNNNNNNNGG 9 cut(s) 407, 624, 715, 791, 1728, 1832, 2660, 2942, 3113
AflII CTTAAG 1 cut(s) 3188
AgeI ACCGGT 1 cut(s) 698
AhlI ACTAGT 2 cut(s) 2150, 2732
AjnI CCWGG 2 cut(s) 1444, 3043
AjuI GAANNNNNNNTTGG 6 cut(s) 449, 481, 1310, 1342, 2706, 2738
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 8 cut(s) 324, 600, 685, 913, 1690, 1976, 2723, 3143
AlwI GGATC 2 cut(s) 557, 3279
AlwNI CAGNNNCTG 1 cut(s) 2725
Ama87I CYCGRG 2 cut(s) 2438, 3153
Aor13HI TCCGGA 2 cut(s) 1847, 2050
Aor51HI AGCGCT 1 cut(s) 2605
AoxI GGCC 3 cut(s) 615, 1730, 3223
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AseI ATTAAT 1 cut(s) 1857
AsiGI ACCGGT 1 cut(s) 698
Asp700I GAANNNNTTC 2 cut(s) 684, 2826
AspLEI GCGC 4 cut(s) 587, 1958, 2606, 3007
AspS9I GGNCC 4 cut(s) 469, 615, 1276, 1527
AsuC2I CCSGG 4 cut(s) 642, 1266, 2340, 3108
AsuNHI GCTAGC 2 cut(s) 604, 2708
AvaI CYCGRG 2 cut(s) 2438, 3153
AvaII GGWCC 3 cut(s) 469, 1276, 1527
AxyI CCTNAGG 1 cut(s) 822
BaeI ACNNNNGTAYC 4 cut(s) 660, 693, 1432, 1465
BanI GGYRCC 2 cut(s) 656, 1448
BanII GRGCYC 2 cut(s) 955, 995
BauI CACGAG 2 cut(s) 2092, 2315
BbrPI CACGTG 1 cut(s) 3062
BbsI GAAGAC 2 cut(s) 3252, 3290
Bbv12I GWGCWC 1 cut(s) 955
BccI CCATC 7 cut(s) 1286, 1460, 2298, 3090, 3152, 3156, 3170
BceAI ACGGC 5 cut(s) 593, 1454, 1642, 2992, 3210
BciT130I CCWGG 2 cut(s) 1446, 3045
BciVI GTATCC 3 cut(s) 267, 1433, 2675
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 4 cut(s) 642, 1266, 2340, 3108
BcoDI GTCTC 8 cut(s) 324, 600, 685, 913, 1690, 1976, 2723, 3143
BcuI ACTAGT 2 cut(s) 2150, 2732
BfmI CTRYAG 3 cut(s) 629, 996, 3086
BfoI RGCGCY 1 cut(s) 2607
BfrI CTTAAG 1 cut(s) 3188
BfuI GTATCC 3 cut(s) 267, 1433, 2675
BglI GCCNNNNNGGC 1 cut(s) 614
BlpI GCTNAGC 1 cut(s) 22
Bme1390I CCNGG 6 cut(s) 642, 1266, 1446, 2340, 3045, 3108
Bme18I GGWCC 3 cut(s) 469, 1276, 1527
BmeT110I CYCGRG 2 cut(s) 2438, 3153
BmgT120I GGNCC 4 cut(s) 469, 615, 1276, 1527
BmiI GGNNCC 4 cut(s) 546, 658, 783, 1450
BmrFI CCNGG 6 cut(s) 642, 1266, 1446, 2340, 3045, 3108
BmtI GCTAGC 2 cut(s) 608, 2712
BoxI GACNNNNGTC 1 cut(s) 3069
BpiI GAAGAC 2 cut(s) 3252, 3290
BplI GAGNNNNNCTC 4 cut(s) 2876, 2908, 2943, 2975
BpmI CTGGAG 3 cut(s) 429, 2747, 2945
Bpu1102I GCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 4 cut(s) 642, 1266, 2340, 3108
Bsa29I ATCGAT 1 cut(s) 378
BsaAI YACGTR 2 cut(s) 2632, 3062
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 7 cut(s) 1444, 1607, 1658, 2413, 2916, 3044, 3107
BsaWI WCCGGW 4 cut(s) 698, 886, 1847, 2050
BsaXI ACNNNNNCTCC 4 cut(s) 1246, 1276, 1455, 1485
Bsc4I CCNNNNNNNGG 9 cut(s) 407, 624, 715, 791, 1728, 1832, 2660, 2942, 3113
Bse118I RCCGGY 2 cut(s) 122, 698
Bse1I ACTGG 2 cut(s) 1733, 2454
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 3 cut(s) 883, 1917, 2292
Bse8I GATNNNNATC 1 cut(s) 374
BseAI TCCGGA 2 cut(s) 1847, 2050
BseBI CCWGG 2 cut(s) 1446, 3045
BseCI ATCGAT 1 cut(s) 378
BseDI CCNNGG 7 cut(s) 1444, 1607, 1658, 2413, 2916, 3044, 3107
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 9 cut(s) 407, 624, 715, 791, 1728, 1832, 2660, 2942, 3113
BseMI GCAATG 3 cut(s) 883, 1917, 2292
BseNI ACTGG 2 cut(s) 1733, 2454
BseRI GAGGAG 5 cut(s) 660, 945, 1572, 2015, 2933
BsgI GTGCAG 2 cut(s) 1806, 2074
Bsh1236I CGCG 3 cut(s) 1956, 2501, 3199
BshFI GGCC 3 cut(s) 617, 1732, 3225
BshNI GGYRCC 2 cut(s) 656, 1448
BshTI ACCGGT 1 cut(s) 698
BshVI ATCGAT 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 955
BsiHKCI CYCGRG 2 cut(s) 2438, 3153
BslI CCNNNNNNNGG 9 cut(s) 407, 624, 715, 791, 1728, 1832, 2660, 2942, 3113
BsmAI GTCTC 8 cut(s) 324, 600, 685, 913, 1690, 1976, 2723, 3143
BsmI GAATGC 1 cut(s) 1605
BsnI GGCC 3 cut(s) 617, 1732, 3225
Bso31I GGTCTC 1 cut(s) 913
BsoBI CYCGRG 2 cut(s) 2438, 3153
Bsp1286I GDGCHC 2 cut(s) 955, 995
Bsp13I TCCGGA 2 cut(s) 1847, 2050
Bsp143I GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
Bsp1720I GCTNAGC 1 cut(s) 22
BspANI GGCC 3 cut(s) 617, 1732, 3225
BspDI ATCGAT 1 cut(s) 378
BspEI TCCGGA 2 cut(s) 1847, 2050
BspFNI CGCG 3 cut(s) 1956, 2501, 3199
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 4 cut(s) 546, 658, 783, 1450
BspMAI CTGCAG 1 cut(s) 633
BspOI GCTAGC 2 cut(s) 608, 2712
BspPI GGATC 2 cut(s) 557, 3279
BspQI GCTCTTC 1 cut(s) 1637
BspT107I GGYRCC 2 cut(s) 656, 1448
BspTI CTTAAG 1 cut(s) 3188
BspTNI GGTCTC 1 cut(s) 913
BsrDI GCAATG 3 cut(s) 883, 1917, 2292
BsrFI RCCGGY 2 cut(s) 122, 698
BsrI ACTGG 2 cut(s) 1733, 2454
BssAI RCCGGY 2 cut(s) 122, 698
BssECI CCNNGG 7 cut(s) 1444, 1607, 1658, 2413, 2916, 3044, 3107
BssMI GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
BssSI CACGAG 2 cut(s) 2092, 2315
BssT1I CCWWGG 1 cut(s) 2413
Bst2BI CACGAG 2 cut(s) 2092, 2315
Bst2UI CCWGG 2 cut(s) 1446, 3045
Bst4CI ACNGT 9 cut(s) 673, 710, 854, 1176, 1240, 1394, 2663, 3090, 3255
Bst6I CTCTTC 5 cut(s) 301, 327, 1637, 1992, 2817
BstAFI CTTAAG 1 cut(s) 3188
BstAPI GCANNNNNTGC 1 cut(s) 1763
BstBAI YACGTR 2 cut(s) 2632, 3062
BstC8I GCNNGC 8 cut(s) 31, 549, 583, 606, 1046, 1131, 1655, 2710
BstDSI CCRYGG 1 cut(s) 1658
BstEII GGTNACC 1 cut(s) 3166
BstFNI CGCG 3 cut(s) 1956, 2501, 3199
BstH2I RGCGCY 1 cut(s) 2607
BstHHI GCGC 4 cut(s) 587, 1958, 2606, 3007
BstKTI GATC 6 cut(s) 565, 742, 2403, 2925, 2980, 3274
BstMAI GTCTC 8 cut(s) 324, 600, 685, 913, 1690, 1976, 2723, 3143
BstMBI GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
BstMWI GCNNNNNNNGC 7 cut(s) 95, 104, 614, 1007, 1763, 1907, 2610
BstNI CCWGG 2 cut(s) 1446, 3045
BstPAI GACNNNNGTC 1 cut(s) 3069
BstPI GGTNACC 1 cut(s) 3166
BstSCI CCNGG 6 cut(s) 640, 1264, 1444, 2338, 3043, 3106
BstSFI CTRYAG 3 cut(s) 629, 996, 3086
BstSNI TACGTA 1 cut(s) 2632
BstUI CGCG 3 cut(s) 1956, 2501, 3199
BstV2I GAAGAC 2 cut(s) 3252, 3290
BstX2I RGATCY 1 cut(s) 3271
BstXI CCANNNNNNTGG 1 cut(s) 3021
BstYI RGATCY 1 cut(s) 3271
Bsu15I ATCGAT 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 822
BsuI GTATCC 3 cut(s) 267, 1433, 2675
BsuRI GGCC 3 cut(s) 617, 1732, 3225
BsuTUI ATCGAT 1 cut(s) 378
BtgI CCRYGG 1 cut(s) 1658
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 1416, 2447
Cac8I GCNNGC 8 cut(s) 31, 549, 583, 606, 1046, 1131, 1655, 2710
CaiI CAGNNNCTG 1 cut(s) 2725
CciI TCATGA 1 cut(s) 730
CfoI GCGC 4 cut(s) 587, 1958, 2606, 3007
Cfr10I RCCGGY 2 cut(s) 122, 698
Cfr13I GGNCC 4 cut(s) 469, 615, 1276, 1527
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 2 cut(s) 397, 1210
Csp6I GTAC 3 cut(s) 2410, 2479, 2511
CspAI ACCGGT 1 cut(s) 698
CviAII CATG 6 cut(s) 37, 535, 731, 743, 959, 3002
CviQI GTAC 3 cut(s) 2410, 2479, 2511
DpnI GATC 6 cut(s) 564, 741, 2402, 2924, 2979, 3273
DpnII GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
DraIII CACNNNGTG 1 cut(s) 2320
EaeI YGGCCR 1 cut(s) 3223
Eam1104I CTCTTC 5 cut(s) 301, 327, 1637, 1992, 2817
EarI CTCTTC 5 cut(s) 301, 327, 1637, 1992, 2817
Ecl136II GAGCTC 1 cut(s) 953
Eco105I TACGTA 1 cut(s) 2632
Eco130I CCWWGG 1 cut(s) 2413
Eco24I GRGCYC 2 cut(s) 955, 995
Eco31I GGTCTC 1 cut(s) 913
Eco47I GGWCC 3 cut(s) 469, 1276, 1527
Eco47III AGCGCT 1 cut(s) 2605
Eco53kI GAGCTC 1 cut(s) 953
Eco57I CTGAAG 4 cut(s) 1127, 1145, 2232, 3108
Eco72I CACGTG 1 cut(s) 3062
Eco81I CCTNAGG 1 cut(s) 822
Eco88I CYCGRG 2 cut(s) 2438, 3153
Eco91I GGTNACC 1 cut(s) 3166
EcoICRI GAGCTC 1 cut(s) 953
EcoO65I GGTNACC 1 cut(s) 3166
EcoRII CCWGG 2 cut(s) 1444, 3043
EcoT14I CCWWGG 1 cut(s) 2413
EcoT22I ATGCAT 1 cut(s) 1605
EcoT38I GRGCYC 2 cut(s) 955, 995
ErhI CCWWGG 1 cut(s) 2413
FaeI CATG 6 cut(s) 40, 538, 734, 746, 962, 3005
FatI CATG 6 cut(s) 36, 534, 730, 742, 958, 3001
FauI CCCGC 1 cut(s) 1429
FbaI TGATCA 1 cut(s) 739
FriOI GRGCYC 2 cut(s) 955, 995
GlaI GCGC 4 cut(s) 586, 1957, 2605, 3006
GsuI CTGGAG 3 cut(s) 429, 2747, 2945
HaeII RGCGCY 1 cut(s) 2607
HaeIII GGCC 3 cut(s) 617, 1732, 3225
HgaI GACGC 2 cut(s) 397, 1210
HhaI GCGC 4 cut(s) 587, 1958, 2606, 3007
Hin1II CATG 6 cut(s) 40, 538, 734, 746, 962, 3005
Hin6I GCGC 4 cut(s) 585, 1956, 2604, 3005
HinP1I GCGC 4 cut(s) 585, 1956, 2604, 3005
HincII GTYRAC 1 cut(s) 2083
HindII GTYRAC 1 cut(s) 2083
HindIII AAGCTT 5 cut(s) 1046, 2215, 2294, 2681, 3191
HpaI GTTAAC 1 cut(s) 2083
Hpy166II GTNNAC 4 cut(s) 797, 1620, 2083, 2447
Hpy8I GTNNAC 4 cut(s) 797, 1620, 2083, 2447
Hpy99I CGWCG 1 cut(s) 1408
HpyAV CCTTC 8 cut(s) 336, 411, 762, 1183, 2465, 2516, 2792, 3132
HpyCH4III ACNGT 9 cut(s) 673, 710, 854, 1176, 1240, 1394, 2663, 3090, 3255
HpyCH4IV ACGT 4 cut(s) 171, 1089, 2631, 3061
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 104, 614, 1007, 1763, 1907, 2610
HpySE526I ACGT 4 cut(s) 171, 1089, 2631, 3061
Hsp92II CATG 6 cut(s) 40, 538, 734, 746, 962, 3005
HspAI GCGC 4 cut(s) 585, 1956, 2604, 3005
Kpn2I TCCGGA 2 cut(s) 1847, 2050
Ksp22I TGATCA 1 cut(s) 739
KspAI GTTAAC 1 cut(s) 2083
Kzo9I GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
LguI GCTCTTC 1 cut(s) 1637
MaeII ACGT 4 cut(s) 171, 1089, 2631, 3061
MalI GATC 6 cut(s) 564, 741, 2402, 2924, 2979, 3273
MboI GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
MfeI CAATTG 2 cut(s) 1017, 2810
MflI RGATCY 1 cut(s) 3271
MhlI GDGCHC 2 cut(s) 955, 995
MluCI AATT 7 cut(s) 937, 1017, 1372, 1674, 2418, 2621, 2810
MlyI GAGTC 7 cut(s) 1358, 1721, 2104, 2364, 2961, 3145, 3311
MmeI TCCRAC 2 cut(s) 84, 1844
Mph1103I ATGCAT 1 cut(s) 1605
MroI TCCGGA 2 cut(s) 1847, 2050
MroXI GAANNNNTTC 2 cut(s) 684, 2826
MslI CAYNNNNRTG 4 cut(s) 342, 735, 1395, 1849
MspA1I CMGCKG 2 cut(s) 26, 1880
MspCI CTTAAG 1 cut(s) 3188
MspR9I CCNGG 6 cut(s) 642, 1266, 1446, 2340, 3045, 3108
MunI CAATTG 2 cut(s) 1017, 2810
Mva1269I GAATGC 1 cut(s) 1605
MvaI CCWGG 2 cut(s) 1446, 3045
MvnI CGCG 3 cut(s) 1956, 2501, 3199
MwoI GCNNNNNNNGC 7 cut(s) 95, 104, 614, 1007, 1763, 1907, 2610
NciI CCSGG 4 cut(s) 642, 1266, 2340, 3108
NdeII GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
NheI GCTAGC 2 cut(s) 604, 2708
NlaIII CATG 6 cut(s) 40, 538, 734, 746, 962, 3005
NlaIV GGNNCC 4 cut(s) 546, 658, 783, 1450
NmeAIII GCCGAG 2 cut(s) 1207, 2941
NmuCI GTSAC 8 cut(s) 287, 633, 869, 1350, 1920, 2945, 3062, 3166
NsiI ATGCAT 1 cut(s) 1605
PaeR7I CTCGAG 1 cut(s) 3153
PagI TCATGA 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 1637
PctI GAATGC 1 cut(s) 1605
PdmI GAANNNNTTC 2 cut(s) 684, 2826
PflFI GACNNNGTC 1 cut(s) 2951
PfoI TCCNGGA 1 cut(s) 640
PinAI ACCGGT 1 cut(s) 698
PleI GAGTC 7 cut(s) 1357, 1720, 2103, 2363, 2960, 3145, 3310
PmaCI CACGTG 1 cut(s) 3062
PmlI CACGTG 1 cut(s) 3062
PpsI GAGTC 7 cut(s) 1357, 1720, 2103, 2363, 2960, 3145, 3310
Ppu21I YACGTR 2 cut(s) 2632, 3062
PshAI GACNNNNGTC 1 cut(s) 3069
PshBI ATTAAT 1 cut(s) 1857
PsiI TTATAA 2 cut(s) 1703, 2534
Psp124BI GAGCTC 1 cut(s) 955
Psp6I CCWGG 2 cut(s) 1444, 3043
PspCI CACGTG 1 cut(s) 3062
PspEI GGTNACC 1 cut(s) 3166
PspGI CCWGG 2 cut(s) 1444, 3043
PspN4I GGNNCC 4 cut(s) 546, 658, 783, 1450
PspPI GGNCC 4 cut(s) 469, 615, 1276, 1527
PstI CTGCAG 1 cut(s) 633
PstNI CAGNNNCTG 1 cut(s) 2725
PsuI RGATCY 1 cut(s) 3271
PsyI GACNNNGTC 1 cut(s) 2951
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 3 cut(s) 2411, 2480, 2512
RsaNI GTAC 3 cut(s) 2410, 2479, 2511
RseI CAYNNNNRTG 4 cut(s) 342, 735, 1395, 1849
SacI GAGCTC 1 cut(s) 955
SapI GCTCTTC 1 cut(s) 1637
Sau3AI GATC 6 cut(s) 562, 739, 2400, 2922, 2977, 3271
Sau96I GGNCC 4 cut(s) 469, 615, 1276, 1527
SchI GAGTC 7 cut(s) 1358, 1721, 2104, 2364, 2961, 3145, 3311
ScrFI CCNGG 6 cut(s) 642, 1266, 1446, 2340, 3045, 3108
SduI GDGCHC 2 cut(s) 955, 995
SfcI CTRYAG 3 cut(s) 629, 996, 3086
Sfr274I CTCGAG 1 cut(s) 3153
SinI GGWCC 3 cut(s) 469, 1276, 1527
SlaI CTCGAG 1 cut(s) 3153
SmiMI CAYNNNNRTG 4 cut(s) 342, 735, 1395, 1849
SmlI CTYRAG 3 cut(s) 914, 3153, 3188
SmoI CTYRAG 3 cut(s) 914, 3153, 3188
SnaBI TACGTA 1 cut(s) 2632
SpeI ACTAGT 2 cut(s) 2150, 2732
Sse9I AATT 7 cut(s) 937, 1017, 1372, 1674, 2418, 2621, 2810
SstI GAGCTC 1 cut(s) 955
StyD4I CCNGG 6 cut(s) 640, 1264, 1444, 2338, 3043, 3106
StyI CCWWGG 1 cut(s) 2413
TaaI ACNGT 9 cut(s) 673, 710, 854, 1176, 1240, 1394, 2663, 3090, 3255
TaiI ACGT 4 cut(s) 174, 1092, 2634, 3064
TaqI TCGA 9 cut(s) 9, 255, 378, 1040, 1403, 2520, 2769, 2830, 3154
TasI AATT 7 cut(s) 937, 1017, 1372, 1674, 2418, 2621, 2810
TatI WGTACW 2 cut(s) 2478, 2510
TauI GCSGC 1 cut(s) 1490
TscAI CASTG 3 cut(s) 70, 1423, 2454
TseFI GTSAC 8 cut(s) 287, 633, 869, 1350, 1920, 2945, 3062, 3166
Tsp45I GTSAC 8 cut(s) 287, 633, 869, 1350, 1920, 2945, 3062, 3166
TspDTI ATGAA 8 cut(s) 53, 195, 719, 747, 1833, 2167, 2268, 3233
TspGWI ACGGA 2 cut(s) 1220, 2792
TspRI CASTG 3 cut(s) 70, 1423, 2454
Tth111I GACNNNGTC 1 cut(s) 2951
Vha464I CTTAAG 1 cut(s) 3188
VpaK11BI GGWCC 3 cut(s) 469, 1276, 1527
VspI ATTAAT 1 cut(s) 1857
XcmI CCANNNNNNNNNTGG 2 cut(s) 1423, 2420
XhoI CTCGAG 1 cut(s) 3153
XmnI GAANNNNTTC 2 cut(s) 684, 2826
Zsp2I ATGCAT 1 cut(s) 1605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.