Rw5G008690

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007664
Physical Location & Seq
Reverse (-)
9433854 .. 9438537
4684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008690.1

Sequence Viewer

Length: 3486 bp
ATGCGTAAGCTGCTACAAGAAGAAACACCGAACAGGAAGAACGGTGATGACAACAATAAATTAATGTCCAAACTCGGGAAGCGTTTCAACAATAAAAACATGGAGTCTGAGAGAACCACCGGTACATTCTCATCCTCAGCTACAAGCAACGCGAGGCCCAACAACAACACCATGATCACCGTCAAAAGAGATAAAGCAACTATTGCTCACTACAATGCAGACGCTGGACTTTTAAATGAGTTTGAACAGTCCACTGTGTCTGGTAAGTCCTTTAACTATACAAGATCGATGCTTCATCCACTTCAGTCTGTCCCTGAGGAGCACATAACTGCTTATTTCTCAAAAATCCAAAGAGGCGCTCTTGTTCAGTCTTTTGGGTGCATGCTTGCAATTGATGAACCTACGTTTAGGATTATCTGTTATAGTGAGAACTGCTCTGAGTTTTTGGGTCTGGATGGTACTTTAGAGTCAAAAGAAGAAAAGGGTCTGATTGGAATTGATGCTAAAACTCTGTTTACACCCTCATCTGGGGCTTCACTGGCCAAAGCGGCCGCTTCGAGGGAGCTATCATTGCTGAACCCAATTTGGGTGTATTCCAGGACCACCCAAAAGCCATTTTATGCTATATTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCCAAGTGTGGTGATCCTGCATTGTCCCTTGCAGGGGCTGTGCAGTCCCAGAAGCTTGCGGTTCGGGCAATCTCGAGGCTTCAGTCTCTCCCTGGAGGAGATATTGGGACTCTGTGTGACACTGTTGCGGAGGATGTTCAGAAGCTGACTGGATATGACAGAGTTATGGTGTACAAGTTTCATGAAGATGATCATGGGGAAGTTGTGTCTGAGATCAGAAGGTCGGATTTGGAGTCCTATTTGGGGTTGCATTATCCTGCCACGGATATCCCTCAGGCGGCTCGGTTCTTGTTCAAGCAGAATCGGGTGCGGATGATTTGTGATTGCAATGCAAATCCTGTAAAACTCATTCAAAGTCAAGAGCTGGAGCAGCCTCTGTGCTTGGTGAATTCAACTCTCCGGTCACCACACGATTGCCACAGAACATACATGTCAAACATGGGCTCAGTTGCATCACTGGTCATGGCGGTTACTATCAATAGTCCTGATTCCACCAAGCTTTGGGGGTTGGTGGTGTGCCATCACACTTCACCCCGCTATGTTCCTTTCCCTCTTCGCTATGCTTGTGAATTTCTTATGCAGGCATTTGTGTTGCAGCTTAACATGGAGCTTCAGTTGGCAATACAATTGGCCGAAAAGAAGATTCTCAAAACACAGACTATACTTTGTGACATGCTCCTCCGGGAAGCCCCGTCTGGTATTGTAACCCAATCTCCTAGTATAATGGATCTTGTCAAGTCTGATGGGGCTGCATTGTACTATAGTGGGACATGTTGGTTGACGGGTGTCACACCAACTGAGTCACAGGTTAAAGATATAGCCGAGTGGCTGCTGAAGAATCATGGGGATTCTACAGGACTGAGTACTGACAGTTTGGCTGAAGCTGGTTACCCTGGTGCAGCTCTACTAGGCAATGCGGTTTGTGGTATAGCTACTGCAAGAATCAGTTCAAAGGATTTTCTGTTTTGGTTCAGGTCTCACACCGCCGAGGAAGTCAAGTGGGGAGGAGCTAAGCATCATCCACAGGATAAGGATGATGGTGGAAGAATGCACCCAAGATCATCATTTAAGGCTTTTCTTGAAGTAGCGAAAAGTAGAAGCTTGCCTTGGGAGGACTCCGAGATTAATGCCATCCACTCTTTACAGCTCATAATGAGAGACTCGTTCCAGGATATGGAGGAAACTGGTCCTAAGCCAACAAATAATAATGCTCGTCCTGGTGATGCTGAAATGCAGGTGGAGGGGATGGATGAGATCAGTTCTGTGGCATGTGAAATGGTTAAATTGATTGAAACGGCTCAAGTTCCGATTTTCGGGGTTGATTCAGAGGGTCTCATCAATGGATGGAATGCAAAGATGGCTGAATTGACAGGATTACAAGATGGTGAAGCAATGGGGAAGTCCCTTGTTGATGATATTGTTCATGAGGACTCGCGTGGAGCTGTTGAAAGTATCTTATCCAGAGCGTTACAAGGTGATGAGGACAAGAATATTGAGTTGAAACTGAGAAATTTTGGACTTGCTCAGCAAAACTCAGTGGTATATATTGTGGCCAACAGTTGCACTAGTAGGAATCATGCAAAGAATGTTGTTGGCGCATGCTTCGTGGGTCAAGACATTACTTGTGAAAAACTTGTTAGGGATAAATTTATCCAGTTGCAAGGGGACTATAGGGCTATCATACAGAGTCTTAACCCATTGATTCCACCAATATTTGCATCTGATGAGAATGCCTGCTGCTCTGAATGGAGTGCAGCAATGGAAAAGCTGACTGGTTTGACAAGAGATGATGTTATTGGTAAAATGCTCCCTGGAGAAATCTTTGGAGAGTTCTGTCAATTGAAAGGTCAAGATTCGCTAACCAAATTTAGGATTGTACTATATCAAGGAATCATTGGGCAAGACATTGAAAAGTTTCCATTTGGGTTTTTTGATAGAGAAGGGAAGTATGTTGAGGTGCTCTTAACAGCAAGCAAGAGGACTGATGCCAATGGGAATATAATTGGTTGCTTCTGCTTCTTGCAAACATTTCTACCACACCTGCAGCCAGCCATGGAAGGACTCGGACAAGAGGATAAATTCTCTTCAAAACTTAAGGAATTAACTTACATGCGACAAGAGATGAAAAATCCTTTAAGTGGTATCCGGTTTACACACAGACTCCTTGAAAATACAAATGTTTCAGAATATCAGAAGCAATTTCTTGACACTAGTGGTGCATGTGAAAGACAAATCATGGCAATCCTTGAGAATCTGGATACGAGGAGCATAGAGGAAGGCAATGTGAAGCTGAACATGGAAGAATTTCTCTTGAGAACTCTTATAGATGCCATTGTGAGTCAATCAATGATCTCATTGAGGGAAAGAAATCTACAGTTATTTCATGAGATTCCAGAAGAACTCAAAACACTATCTTTGCTTGGCGACCAAATCAGGCTTCAGTTGGTCTTGTCAGATTTCTTGCTTAATGTGGTGCATCATACACCTTCTCCAGATGGCTGGGTTGAAATCAGAATTTCACCAGGTCTAAAGCGAATACATGATGGCAACACCTATATCCGTTTACAGTTCAGAATGACTCACCCTGGTCAAGGAATTCCCACTGCACTTATTCAAGATATGTTCGCCGGTGAAGATCAGTGGAATACACAAGAAGGACTTGGGCTAAACCTGTCCAGAAAACTTCTCGGTAGAATGAATGGTCAGGTCCAGTATGTAAGAGAGCATGATAAGTGTTACTTCCTCATTGATATTGAACTTAGAACAAGGAAAGAAAGGCAGAGGGTGTTACCGTCACAATCTAATAGGAGCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1161

Amino Acids

129.7

Weight (kDa)

5.79

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 112 - 224 6.5e-34 PAS fold
GAF PF01590 257 - 427 1.4e-17 GAF domain
PHY PF00360 440 - 615 2.5e-56 Phytochrome region
PAS PF00989 648 - 763 4.3e-25 PAS fold
PAS_4 PF08448 655 - 764 8.2e-07 PAS fold
PAS PF00989 779 - 898 1.7e-18 PAS fold
HisKA PF00512 920 - 982 5.8e-09 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1031 - 1132 1.6e-11 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1894, 2718
Acc36I ACCTGC 2 cut(s) 1894, 2718
AccB7I CCANNNNNTGG 2 cut(s) 1170, 1843
AccII CGCG 2 cut(s) 152, 2104
AclWI GGATC 2 cut(s) 677, 1404
AcoI YGGCCR 4 cut(s) 540, 549, 1299, 2220
AcsI RAATTY 9 cut(s) 1057, 1238, 2179, 2315, 2534, 2747, 2972, 3183, 3264
AcuI CTGAAG 6 cut(s) 287, 734, 1265, 1523, 1569, 3092
AfaI GTAC 6 cut(s) 124, 460, 842, 1427, 1534, 2547
AflII CTTAAG 1 cut(s) 2762
AflIII ACRYGT 2 cut(s) 1098, 1439
AgeI ACCGGT 1 cut(s) 119
AhlI ACTAGT 2 cut(s) 2234, 2879
AjnI CCWGG 8 cut(s) 596, 760, 1561, 1836, 1885, 2479, 3190, 3253
AjuI GAANNNNNNNTTGG 4 cut(s) 1759, 1791, 3090, 3122
Alw21I GWGCWC 3 cut(s) 324, 2631, 3482
Alw26I GTCTC 4 cut(s) 759, 1650, 1821, 2006
AlwI GGATC 2 cut(s) 677, 1404
AlwNI CAGNNNCTG 4 cut(s) 224, 707, 814, 1045
Ama87I CYCGRG 2 cut(s) 74, 742
AoxI GGCC 5 cut(s) 155, 540, 549, 1299, 2220
ApeKI GCWGC 9 cut(s) 10, 1039, 1264, 1418, 1498, 1568, 2406, 2423, 2713
ApoI RAATTY 9 cut(s) 1057, 1238, 2179, 2315, 2534, 2747, 2972, 3183, 3264
AseI ATTAAT 2 cut(s) 62, 1794
AsiGI ACCGGT 1 cut(s) 119
Asp700I GAANNNNTTC 4 cut(s) 83, 1615, 2583, 2973
AspLEI GCGC 2 cut(s) 359, 2267
AspS9I GGNCC 4 cut(s) 156, 600, 1856, 3376
AsuC2I CCSGG 1 cut(s) 1352
AvaI CYCGRG 2 cut(s) 74, 742
AvaII GGWCC 3 cut(s) 600, 1856, 3376
AxyI CCTNAGG 2 cut(s) 315, 942
BalI TGGCCA 2 cut(s) 542, 2222
BanII GRGCYC 1 cut(s) 1115
Bbv12I GWGCWC 3 cut(s) 324, 2631, 3482
BbvCI CCTCAGC 1 cut(s) 136
BbvI GCAGC 8 cut(s) 1051, 1276, 1405, 1485, 1580, 2393, 2435, 2725
BceAI ACGGC 1 cut(s) 1980
BcgI CGANNNNNNTGC 2 cut(s) 1778, 1812
BciT130I CCWGG 8 cut(s) 598, 762, 1563, 1838, 1887, 2481, 3192, 3255
BciVI GTATCC 2 cut(s) 2822, 2920
BclI TGATCA 2 cut(s) 174, 859
BcnI CCSGG 1 cut(s) 1352
BcoDI GTCTC 4 cut(s) 759, 1650, 1821, 2006
BcuI ACTAGT 2 cut(s) 2234, 2879
BfaI CTAG 4 cut(s) 1386, 1577, 2235, 2880
BfmI CTRYAG 5 cut(s) 1429, 1521, 2338, 2711, 3041
BfoI RGCGCY 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 2762
BfuAI ACCTGC 2 cut(s) 1894, 2718
BfuI GTATCC 2 cut(s) 2822, 2920
BglI GCCNNNNNGGC 1 cut(s) 548
BlpI GCTNAGC 2 cut(s) 1680, 2193
BmcAI AGTACT 1 cut(s) 1534
Bme1390I CCNGG 9 cut(s) 598, 762, 1352, 1563, 1838, 1887, 2481, 3192, 3255
Bme18I GGWCC 3 cut(s) 600, 1856, 3376
BmeT110I CYCGRG 2 cut(s) 74, 742
BmgT120I GGNCC 4 cut(s) 156, 600, 1856, 3376
BmrFI CCNGG 9 cut(s) 598, 762, 1352, 1563, 1838, 1887, 2481, 3192, 3255
BmsI GCATC 9 cut(s) 279, 490, 1130, 1693, 1882, 2396, 2644, 2986, 3154
BoxI GACNNNNGTC 1 cut(s) 1454
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 4 cut(s) 783, 1055, 2502, 3144
Bpu10I CCTNAGC 2 cut(s) 136, 1860
Bpu1102I GCTNAGC 2 cut(s) 1680, 2193
BpuEI CTTGAG 3 cut(s) 1953, 2936, 3001
BpuMI CCSGG 1 cut(s) 1352
Bsa29I ATCGAT 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 3483
BsaI GGTCTC 2 cut(s) 1650, 2006
BsaJI CCNNGG 8 cut(s) 760, 930, 1561, 1656, 1775, 2479, 2721, 3253
BsaWI WCCGGW 3 cut(s) 119, 1068, 2814
BsaXI ACNNNNNCTCC 8 cut(s) 1268, 1298, 1366, 1396, 2814, 2844, 3142, 3172
Bse118I RCCGGY 2 cut(s) 119, 3296
Bse1I ACTGG 7 cut(s) 543, 823, 1131, 1858, 2323, 2446, 3379
Bse21I CCTNAGG 2 cut(s) 315, 942
Bse3DI GCAATG 6 cut(s) 569, 1003, 1588, 2067, 2433, 2956
BseBI CCWGG 8 cut(s) 598, 762, 1563, 1838, 1887, 2481, 3192, 3255
BseCI ATCGAT 1 cut(s) 287
BseDI CCNNGG 8 cut(s) 760, 930, 1561, 1656, 1775, 2479, 2721, 3253
BseMI GCAATG 6 cut(s) 569, 1003, 1588, 2067, 2433, 2956
BseNI ACTGG 7 cut(s) 543, 823, 1131, 1858, 2323, 2446, 3379
BseRI GAGGAG 5 cut(s) 332, 780, 1337, 1689, 2947
BseX3I CGGCCG 1 cut(s) 549
BseXI GCAGC 8 cut(s) 1051, 1276, 1405, 1485, 1580, 2393, 2435, 2725
BseYI CCCAGC 1 cut(s) 3168
BsgI GTGCAG 4 cut(s) 731, 1587, 2442, 3258
Bsh1236I CGCG 2 cut(s) 152, 2104
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
BshTI ACCGGT 1 cut(s) 119
BshVI ATCGAT 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 552
BsiHKAI GWGCWC 3 cut(s) 324, 2631, 3482
BsiHKCI CYCGRG 2 cut(s) 74, 742
BsiSI CCGG 5 cut(s) 120, 1069, 1351, 2815, 3297
BslFI GGGAC 7 cut(s) 296, 679, 700, 790, 1450, 2056, 2348
BsmAI GTCTC 4 cut(s) 759, 1650, 1821, 2006
BsmFI GGGAC 7 cut(s) 296, 679, 700, 790, 1450, 2056, 2348
BsmI GAATGC 3 cut(s) 1722, 2023, 2404
BsnI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
Bso31I GGTCTC 2 cut(s) 1650, 2006
BsoBI CYCGRG 2 cut(s) 74, 742
Bsp1286I GDGCHC 4 cut(s) 324, 1115, 2631, 3482
Bsp1407I TGTACA 1 cut(s) 840
Bsp1720I GCTNAGC 2 cut(s) 1680, 2193
Bsp19I CCATGG 1 cut(s) 2721
BspANI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
BspDI ATCGAT 1 cut(s) 287
BspFNI CGCG 2 cut(s) 152, 2104
BspHI TCATGA 3 cut(s) 850, 2092, 3052
BspMAI CTGCAG 1 cut(s) 2715
BspMI ACCTGC 2 cut(s) 1894, 2718
BspPI GGATC 2 cut(s) 677, 1404
BspTI CTTAAG 1 cut(s) 2762
BspTNI GGTCTC 2 cut(s) 1650, 2006
BsrDI GCAATG 6 cut(s) 569, 1003, 1588, 2067, 2433, 2956
BsrFI RCCGGY 2 cut(s) 119, 3296
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 7 cut(s) 543, 823, 1131, 1858, 2323, 2446, 3379
BssAI RCCGGY 2 cut(s) 119, 3296
BssECI CCNNGG 8 cut(s) 760, 930, 1561, 1656, 1775, 2479, 2721, 3253
BssT1I CCWWGG 2 cut(s) 1775, 2721
Bst2UI CCWGG 8 cut(s) 598, 762, 1563, 1838, 1887, 2481, 3192, 3255
Bst6I CTCTTC 2 cut(s) 1227, 2758
BstAFI CTTAAG 1 cut(s) 2762
BstAPI GCANNNNNTGC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 840
BstBAI YACGTR 1 cut(s) 3483
BstDSI CCRYGG 2 cut(s) 930, 2721
BstEII GGTNACC 2 cut(s) 1071, 1556
BstENI CCTNNNNNAGG 1 cut(s) 3258
BstFNI CGCG 2 cut(s) 152, 2104
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 359, 2267
BstMAI GTCTC 4 cut(s) 759, 1650, 1821, 2006
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 8 cut(s) 10, 203, 539, 548, 571, 734, 1039, 2027
BstNI CCWGG 8 cut(s) 598, 762, 1563, 1838, 1887, 2481, 3192, 3255
BstNSI RCATGY 8 cut(s) 385, 1102, 1345, 1443, 1941, 2271, 2782, 2892
BstPAI GACNNNNGTC 1 cut(s) 1454
BstPI GGTNACC 2 cut(s) 1071, 1556
BstSCI CCNGG 9 cut(s) 596, 760, 1350, 1561, 1836, 1885, 2479, 3190, 3253
BstSFI CTRYAG 5 cut(s) 1429, 1521, 2338, 2711, 3041
BstUI CGCG 2 cut(s) 152, 2104
BstV1I GCAGC 8 cut(s) 1051, 1276, 1405, 1485, 1580, 2393, 2435, 2725
BstX2I RGATCY 1 cut(s) 1396
BstXI CCANNNNNNTGG 1 cut(s) 3168
BstYI RGATCY 1 cut(s) 1396
BstZI CGGCCG 1 cut(s) 549
Bsu15I ATCGAT 1 cut(s) 287
Bsu36I CCTNAGG 2 cut(s) 315, 942
BsuI GTATCC 2 cut(s) 2822, 2920
BsuRI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
BsuTUI ATCGAT 1 cut(s) 287
BtgI CCRYGG 2 cut(s) 930, 2721
BtsI GCAGTG 1 cut(s) 3270
BtsIMutI CAGTG 7 cut(s) 252, 536, 789, 1124, 2211, 3270, 3314
BveI ACCTGC 2 cut(s) 1894, 2718
CaiI CAGNNNCTG 4 cut(s) 224, 707, 814, 1045
CciI TCATGA 3 cut(s) 850, 2092, 3052
CciNI GCGGCCGC 1 cut(s) 549
CfoI GCGC 2 cut(s) 359, 2267
Cfr10I RCCGGY 2 cut(s) 119, 3296
Cfr13I GGNCC 4 cut(s) 156, 600, 1856, 3376
ClaI ATCGAT 1 cut(s) 287
CseI GACGC 1 cut(s) 230
CsiI ACCWGGT 1 cut(s) 3190
Csp6I GTAC 6 cut(s) 123, 459, 841, 1426, 1533, 2546
CspAI ACCGGT 1 cut(s) 119
CviQI GTAC 6 cut(s) 123, 459, 841, 1426, 1533, 2546
DraI TTTAAA 1 cut(s) 234
EaeI YGGCCR 4 cut(s) 540, 549, 1299, 2220
EagI CGGCCG 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 1227, 2758
EarI CTCTTC 2 cut(s) 1227, 2758
EclXI CGGCCG 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 1775, 2721
Eco24I GRGCYC 1 cut(s) 1115
Eco31I GGTCTC 2 cut(s) 1650, 2006
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 3 cut(s) 600, 1856, 3376
Eco52I CGGCCG 1 cut(s) 549
Eco57I CTGAAG 6 cut(s) 287, 734, 1265, 1523, 1569, 3092
Eco81I CCTNAGG 2 cut(s) 315, 942
Eco88I CYCGRG 2 cut(s) 74, 742
Eco91I GGTNACC 2 cut(s) 1071, 1556
EcoNI CCTNNNNNAGG 1 cut(s) 3258
EcoO65I GGTNACC 2 cut(s) 1071, 1556
EcoRI GAATTC 2 cut(s) 1057, 3264
EcoRII CCWGG 8 cut(s) 596, 760, 1561, 1836, 1885, 2479, 3190, 3253
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 1775, 2721
EcoT38I GRGCYC 1 cut(s) 1115
ErhI CCWWGG 2 cut(s) 1775, 2721
FalI AAGNNNNNCTT 6 cut(s) 1759, 1791, 3312, 3344, 3392, 3424
FaqI GGGAC 7 cut(s) 296, 679, 700, 790, 1450, 2056, 2348
FauI CCCGC 1 cut(s) 1211
FbaI TGATCA 2 cut(s) 174, 859
FriOI GRGCYC 1 cut(s) 1115
FspBI CTAG 4 cut(s) 1386, 1577, 2235, 2880
GlaI GCGC 2 cut(s) 358, 2266
GsaI CCCAGC 1 cut(s) 3172
GsuI CTGGAG 4 cut(s) 783, 1055, 2502, 3144
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 5 cut(s) 157, 542, 551, 1301, 2222
HapII CCGG 5 cut(s) 120, 1069, 1351, 2815, 3297
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 359, 2267
Hin6I GCGC 2 cut(s) 357, 2265
HinP1I GCGC 2 cut(s) 357, 2265
HincII GTYRAC 1 cut(s) 1449
HindII GTYRAC 1 cut(s) 1449
HindIII AAGCTT 3 cut(s) 722, 1166, 1768
HpaII CCGG 5 cut(s) 120, 1069, 1351, 2815, 3297
Hpy166II GTNNAC 6 cut(s) 252, 516, 841, 1449, 2820, 3233
Hpy8I GTNNAC 6 cut(s) 252, 516, 841, 1449, 2820, 3233
HpyAV CCTTC 6 cut(s) 882, 2603, 2720, 2939, 3165, 3317
HpyCH4IV ACGT 2 cut(s) 404, 3482
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 203, 539, 548, 571, 734, 1039, 2027
HpySE526I ACGT 2 cut(s) 404, 3482
HspAI GCGC 2 cut(s) 357, 2265
Ksp22I TGATCA 2 cut(s) 174, 859
Lsp1109I GCAGC 8 cut(s) 1051, 1276, 1405, 1485, 1580, 2393, 2435, 2725
LweI GCATC 9 cut(s) 279, 490, 1130, 1693, 1882, 2396, 2644, 2986, 3154
MabI ACCWGGT 1 cut(s) 3190
MaeI CTAG 4 cut(s) 1386, 1577, 2235, 2880
MaeII ACGT 2 cut(s) 404, 3482
MfeI CAATTG 3 cut(s) 390, 1295, 2507
MflI RGATCY 1 cut(s) 1396
MhlI GDGCHC 4 cut(s) 324, 1115, 2631, 3482
MlsI TGGCCA 2 cut(s) 542, 2222
MluNI TGGCCA 2 cut(s) 542, 2222
MmeI TCCRAC 1 cut(s) 873
Mox20I TGGCCA 2 cut(s) 542, 2222
MroXI GAANNNNTTC 4 cut(s) 83, 1615, 2583, 2973
MscI TGGCCA 2 cut(s) 542, 2222
MslI CAYNNNNRTG 2 cut(s) 213, 855
Msp20I TGGCCA 2 cut(s) 542, 2222
MspCI CTTAAG 1 cut(s) 2762
MspI CCGG 5 cut(s) 120, 1069, 1351, 2815, 3297
MspR9I CCNGG 9 cut(s) 598, 762, 1352, 1563, 1838, 1887, 2481, 3192, 3255
MunI CAATTG 3 cut(s) 390, 1295, 2507
Mva1269I GAATGC 3 cut(s) 1722, 2023, 2404
MvaI CCWGG 8 cut(s) 598, 762, 1563, 1838, 1887, 2481, 3192, 3255
MvnI CGCG 2 cut(s) 152, 2104
MwoI GCNNNNNNNGC 8 cut(s) 10, 203, 539, 548, 571, 734, 1039, 2027
NciI CCSGG 1 cut(s) 1352
NcoI CCATGG 1 cut(s) 2721
NmeAIII GCCGAG 2 cut(s) 1516, 1681
NmuCI GTSAC 6 cut(s) 785, 1071, 1337, 1456, 1470, 3462
NotI GCGGCCGC 1 cut(s) 549
NspI RCATGY 8 cut(s) 385, 1102, 1345, 1443, 1941, 2271, 2782, 2892
PaeI GCATGC 2 cut(s) 385, 2271
PaeR7I CTCGAG 1 cut(s) 742
PagI TCATGA 3 cut(s) 850, 2092, 3052
PaqCI CACCTGC 2 cut(s) 1894, 2718
PciI ACATGT 2 cut(s) 1098, 1439
PctI GAATGC 3 cut(s) 1722, 2023, 2404
PdmI GAANNNNTTC 4 cut(s) 83, 1615, 2583, 2973
PflMI CCANNNNNTGG 2 cut(s) 1170, 1843
PfoI TCCNGGA 3 cut(s) 596, 1350, 1836
PinAI ACCGGT 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 3483
PscI ACATGT 2 cut(s) 1098, 1439
PshAI GACNNNNGTC 1 cut(s) 1454
PshBI ATTAAT 2 cut(s) 62, 1794
Psp6I CCWGG 8 cut(s) 596, 760, 1561, 1836, 1885, 2479, 3190, 3253
PspEI GGTNACC 2 cut(s) 1071, 1556
PspFI CCCAGC 1 cut(s) 3168
PspGI CCWGG 8 cut(s) 596, 760, 1561, 1836, 1885, 2479, 3190, 3253
PspPI GGNCC 4 cut(s) 156, 600, 1856, 3376
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PstI CTGCAG 1 cut(s) 2715
PstNI CAGNNNCTG 4 cut(s) 224, 707, 814, 1045
PsuI RGATCY 1 cut(s) 1396
RsaI GTAC 6 cut(s) 124, 460, 842, 1427, 1534, 2547
RsaNI GTAC 6 cut(s) 123, 459, 841, 1426, 1533, 2546
RseI CAYNNNNRTG 2 cut(s) 213, 855
Sau96I GGNCC 4 cut(s) 156, 600, 1856, 3376
ScaI AGTACT 1 cut(s) 1534
ScrFI CCNGG 9 cut(s) 598, 762, 1352, 1563, 1838, 1887, 2481, 3192, 3255
SduI GDGCHC 4 cut(s) 324, 1115, 2631, 3482
SexAI ACCWGGT 1 cut(s) 3190
SfaNI GCATC 9 cut(s) 279, 490, 1130, 1693, 1882, 2396, 2644, 2986, 3154
SfcI CTRYAG 5 cut(s) 1429, 1521, 2338, 2711, 3041
SfiI GGCCNNNNNGGCC 1 cut(s) 548
Sfr274I CTCGAG 1 cut(s) 742
SgrAI CRCCGGYG 1 cut(s) 3296
SinI GGWCC 3 cut(s) 600, 1856, 3376
SlaI CTCGAG 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 213, 855
SmlI CTYRAG 5 cut(s) 742, 1968, 2762, 2915, 2980
SmoI CTYRAG 5 cut(s) 742, 1968, 2762, 2915, 2980
SpeI ACTAGT 2 cut(s) 2234, 2879
SphI GCATGC 2 cut(s) 385, 2271
SspI AATATT 2 cut(s) 2161, 2382
SspMI CTAG 4 cut(s) 1386, 1577, 2235, 2880
StyD4I CCNGG 9 cut(s) 596, 760, 1350, 1561, 1836, 1885, 2479, 3190, 3253
StyI CCWWGG 2 cut(s) 1775, 2721
TaiI ACGT 2 cut(s) 407, 3485
TaqI TCGA 3 cut(s) 287, 557, 743
TatI WGTACW 4 cut(s) 840, 1425, 1532, 2545
TauI GCSGC 3 cut(s) 551, 554, 950
TscAI CASTG 7 cut(s) 259, 543, 796, 1131, 2211, 3277, 3314
TseFI GTSAC 6 cut(s) 785, 1071, 1337, 1456, 1470, 3462
TseI GCWGC 9 cut(s) 10, 1039, 1264, 1418, 1498, 1568, 2406, 2423, 2713
Tsp45I GTSAC 6 cut(s) 785, 1071, 1337, 1456, 1470, 3462
TspDTI ATGAA 8 cut(s) 284, 411, 839, 867, 2081, 2807, 3041, 3380
TspGWI ACGGA 2 cut(s) 947, 3218
TspRI CASTG 7 cut(s) 259, 543, 796, 1131, 2211, 3277, 3314
Van91I CCANNNNNTGG 2 cut(s) 1170, 1843
Vha464I CTTAAG 1 cut(s) 2762
VpaK11BI GGWCC 3 cut(s) 600, 1856, 3376
VspI ATTAAT 2 cut(s) 62, 1794
XagI CCTNNNNNAGG 1 cut(s) 3258
XapI RAATTY 9 cut(s) 1057, 1238, 2179, 2315, 2534, 2747, 2972, 3183, 3264
XceI RCATGY 8 cut(s) 385, 1102, 1345, 1443, 1941, 2271, 2782, 2892
XhoI CTCGAG 1 cut(s) 742
XmnI GAANNNNTTC 4 cut(s) 83, 1615, 2583, 2973
XspI CTAG 4 cut(s) 1386, 1577, 2235, 2880
ZrmI AGTACT 1 cut(s) 1534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.