Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G18130 |
| fragaria_vesca | FvH4_1g06850 FvH4_3g06380 |
| malus_domestica | MD05G1291600.v1.1 MD10G1267600.v1.1 |
| prunus_persica | Prupe.4G073900_v2.0.a1 Prupe.4G073900_v2.0.a1 Prupe.4G073900_v2.0.a1 Prupe.4G073900_v2.0.a1 |
| pyrus_communis | pycom05g26810 pycom10g22370 |
| rosa_chinensis | RchiOBHm_Chr5g0012921 |
| rosa_laevigata | RLG00000031969 |
| rosa_multiflora | Rmu_sc0006885.1_g000001 Rmu_sc0016318.1_g000002 Rmu_sc0021373.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00063660 |
| rosa_rugosa | Rorug05G0005200 Rorug05G0005300 |
| rosa_samantha | Rh5AG099500 Rh5BG096100 Rh5CG108400 Rh5DG094800 |
| rosa_wichuraiana | Rw5G008690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1894 |
| Acc36I | ACCTGC | 1 cut(s) | 1894 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1170, 1843 |
| AccII | CGCG | 1 cut(s) | 2104 |
| AclWI | GGATC | 2 cut(s) | 677, 1404 |
| AcoI | YGGCCR | 3 cut(s) | 540, 549, 1299 |
| AcsI | RAATTY | 2 cut(s) | 1057, 1238 |
| AcuI | CTGAAG | 5 cut(s) | 287, 734, 1265, 1523, 1569 |
| AfaI | GTAC | 6 cut(s) | 124, 460, 732, 842, 1427, 1534 |
| AflIII | ACRYGT | 2 cut(s) | 1098, 1439 |
| AgsI | TTSAA | 8 cut(s) | 88, 245, 964, 1022, 1062, 1620, 1751, 2117 |
| AjnI | CCWGG | 4 cut(s) | 596, 760, 1836, 1885 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1759, 1791 |
| Alw21I | GWGCWC | 1 cut(s) | 324 |
| Alw26I | GTCTC | 5 cut(s) | 759, 1650, 1821, 1955, 2006 |
| AlwI | GGATC | 2 cut(s) | 677, 1404 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 224, 707, 814, 1045 |
| Ama87I | CYCGRG | 1 cut(s) | 742 |
| AoxI | GGCC | 4 cut(s) | 155, 540, 549, 1299 |
| ApeKI | GCWGC | 7 cut(s) | 10, 1039, 1264, 1418, 1498, 1565, 1568 |
| ApoI | RAATTY | 2 cut(s) | 1057, 1238 |
| AseI | ATTAAT | 2 cut(s) | 62, 1794 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 83, 1615 |
| AspLEI | GCGC | 1 cut(s) | 359 |
| AspS9I | GGNCC | 3 cut(s) | 156, 600, 1856 |
| AsuC2I | CCSGG | 1 cut(s) | 1352 |
| AsuHPI | GGTGA | 9 cut(s) | 56, 169, 692, 988, 1065, 1066, 1191, 1901, 2066 |
| AvaI | CYCGRG | 1 cut(s) | 742 |
| AvaII | GGWCC | 2 cut(s) | 600, 1856 |
| AxyI | CCTNAGG | 2 cut(s) | 315, 942 |
| BalI | TGGCCA | 1 cut(s) | 542 |
| BanII | GRGCYC | 1 cut(s) | 1115 |
| Bbv12I | GWGCWC | 1 cut(s) | 324 |
| BbvCI | CCTCAGC | 1 cut(s) | 136 |
| BbvI | GCAGC | 6 cut(s) | 1051, 1276, 1405, 1485, 1552, 1580 |
| BccI | CCATC | 9 cut(s) | 449, 1197, 1406, 1700, 1808, 1909, 2007, 2020, 2045 |
| BceAI | ACGGC | 1 cut(s) | 1980 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1778, 1812 |
| BciT130I | CCWGG | 4 cut(s) | 598, 762, 1838, 1887 |
| BclI | TGATCA | 2 cut(s) | 174, 859 |
| BcnI | CCSGG | 1 cut(s) | 1352 |
| BcoDI | GTCTC | 5 cut(s) | 759, 1650, 1821, 1955, 2006 |
| BfaI | CTAG | 2 cut(s) | 1386, 1577 |
| BfmI | CTRYAG | 3 cut(s) | 1429, 1521, 1566 |
| BfoI | RGCGCY | 1 cut(s) | 360 |
| BfuAI | ACCTGC | 1 cut(s) | 1894 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 548 |
| BlpI | GCTNAGC | 1 cut(s) | 1680 |
| BmcAI | AGTACT | 1 cut(s) | 1534 |
| Bme1390I | CCNGG | 5 cut(s) | 598, 762, 1352, 1838, 1887 |
| Bme18I | GGWCC | 2 cut(s) | 600, 1856 |
| BmeT110I | CYCGRG | 1 cut(s) | 742 |
| BmgT120I | GGNCC | 3 cut(s) | 156, 600, 1856 |
| BmiI | GGNNCC | 1 cut(s) | 105 |
| BmrFI | CCNGG | 5 cut(s) | 598, 762, 1352, 1838, 1887 |
| BmsI | GCATC | 7 cut(s) | 279, 490, 1130, 1345, 1693, 1882, 1890 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1454 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 419, 451 |
| BpmI | CTGGAG | 2 cut(s) | 783, 1055 |
| Bpu10I | CCTNAGC | 2 cut(s) | 136, 1860 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1680 |
| BpuEI | CTTGAG | 1 cut(s) | 1953 |
| BpuMI | CCSGG | 1 cut(s) | 1352 |
| Bsa29I | ATCGAT | 1 cut(s) | 287 |
| BsaI | GGTCTC | 2 cut(s) | 1650, 2006 |
| BsaJI | CCNNGG | 4 cut(s) | 760, 930, 1656, 1775 |
| BsaWI | WCCGGW | 1 cut(s) | 1068 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1268, 1298, 1366, 1396 |
| Bse1I | ACTGG | 5 cut(s) | 120, 543, 823, 1131, 1858 |
| Bse21I | CCTNAGG | 2 cut(s) | 315, 942 |
| Bse3DI | GCAATG | 4 cut(s) | 569, 1003, 1588, 2067 |
| BseBI | CCWGG | 4 cut(s) | 598, 762, 1838, 1887 |
| BseCI | ATCGAT | 1 cut(s) | 287 |
| BseDI | CCNNGG | 4 cut(s) | 760, 930, 1656, 1775 |
| BseMI | GCAATG | 4 cut(s) | 569, 1003, 1588, 2067 |
| BseNI | ACTGG | 5 cut(s) | 120, 543, 823, 1131, 1858 |
| BseRI | GAGGAG | 4 cut(s) | 332, 780, 1337, 1689 |
| BseX3I | CGGCCG | 1 cut(s) | 549 |
| BseXI | GCAGC | 6 cut(s) | 1051, 1276, 1405, 1485, 1552, 1580 |
| BsgI | GTGCAG | 1 cut(s) | 731 |
| Bsh1236I | CGCG | 1 cut(s) | 2104 |
| Bsh1285I | CGRYCG | 1 cut(s) | 552 |
| BshFI | GGCC | 4 cut(s) | 157, 542, 551, 1301 |
| BshVI | ATCGAT | 1 cut(s) | 287 |
| BsiEI | CGRYCG | 1 cut(s) | 552 |
| BsiHKAI | GWGCWC | 1 cut(s) | 324 |
| BsiHKCI | CYCGRG | 1 cut(s) | 742 |
| BsiSI | CCGG | 2 cut(s) | 1069, 1351 |
| BslFI | GGGAC | 6 cut(s) | 296, 679, 700, 790, 1450, 2056 |
| BsmAI | GTCTC | 5 cut(s) | 759, 1650, 1821, 1955, 2006 |
| BsmBI | CGTCTC | 1 cut(s) | 1955 |
| BsmFI | GGGAC | 6 cut(s) | 296, 679, 700, 790, 1450, 2056 |
| BsmI | GAATGC | 2 cut(s) | 1722, 2023 |
| BsnI | GGCC | 4 cut(s) | 157, 542, 551, 1301 |
| Bso31I | GGTCTC | 2 cut(s) | 1650, 2006 |
| BsoBI | CYCGRG | 1 cut(s) | 742 |
| Bsp1286I | GDGCHC | 2 cut(s) | 324, 1115 |
| Bsp1407I | TGTACA | 1 cut(s) | 840 |
| Bsp143I | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1680 |
| BspANI | GGCC | 4 cut(s) | 157, 542, 551, 1301 |
| BspDI | ATCGAT | 1 cut(s) | 287 |
| BspFNI | CGCG | 1 cut(s) | 2104 |
| BspHI | TCATGA | 2 cut(s) | 850, 2092 |
| BspLI | GGNNCC | 1 cut(s) | 105 |
| BspMAI | CTGCAG | 1 cut(s) | 1570 |
| BspMI | ACCTGC | 1 cut(s) | 1894 |
| BspPI | GGATC | 2 cut(s) | 677, 1404 |
| BspQI | GCTCTTC | 1 cut(s) | 1023 |
| BspTNI | GGTCTC | 2 cut(s) | 1650, 2006 |
| BsrDI | GCAATG | 4 cut(s) | 569, 1003, 1588, 2067 |
| BsrGI | TGTACA | 1 cut(s) | 840 |
| BsrI | ACTGG | 5 cut(s) | 120, 543, 823, 1131, 1858 |
| BssECI | CCNNGG | 4 cut(s) | 760, 930, 1656, 1775 |
| BssMI | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| BssT1I | CCWWGG | 1 cut(s) | 1775 |
| Bst2UI | CCWGG | 4 cut(s) | 598, 762, 1838, 1887 |
| Bst4CI | ACNGT | 6 cut(s) | 44, 181, 249, 256, 793, 1541 |
| Bst6I | CTCTTC | 2 cut(s) | 1023, 1227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 203 |
| BstAUI | TGTACA | 1 cut(s) | 840 |
| BstC8I | GCNNGC | 5 cut(s) | 383, 387, 669, 1251, 1772 |
| BstDSI | CCRYGG | 1 cut(s) | 930 |
| BstEII | GGTNACC | 2 cut(s) | 1071, 1556 |
| BstFNI | CGCG | 1 cut(s) | 2104 |
| BstH2I | RGCGCY | 1 cut(s) | 360 |
| BstHHI | GCGC | 1 cut(s) | 359 |
| BstKTI | GATC | 8 cut(s) | 177, 287, 685, 862, 885, 1399, 1730, 1926 |
| BstMAI | GTCTC | 5 cut(s) | 759, 1650, 1821, 1955, 2006 |
| BstMBI | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| BstMCI | CGRYCG | 1 cut(s) | 552 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 10, 203, 539, 548, 571, 734, 1039, 2027 |
| BstNI | CCWGG | 4 cut(s) | 598, 762, 1838, 1887 |
| BstNSI | RCATGY | 5 cut(s) | 385, 1102, 1345, 1443, 1941 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1454 |
| BstPI | GGTNACC | 2 cut(s) | 1071, 1556 |
| BstSCI | CCNGG | 5 cut(s) | 596, 760, 1350, 1836, 1885 |
| BstSFI | CTRYAG | 3 cut(s) | 1429, 1521, 1566 |
| BstUI | CGCG | 1 cut(s) | 2104 |
| BstV1I | GCAGC | 6 cut(s) | 1051, 1276, 1405, 1485, 1552, 1580 |
| BstX2I | RGATCY | 1 cut(s) | 1396 |
| BstYI | RGATCY | 1 cut(s) | 1396 |
| BstZI | CGGCCG | 1 cut(s) | 549 |
| Bsu15I | ATCGAT | 1 cut(s) | 287 |
| Bsu36I | CCTNAGG | 2 cut(s) | 315, 942 |
| BsuRI | GGCC | 4 cut(s) | 157, 542, 551, 1301 |
| BsuTUI | ATCGAT | 1 cut(s) | 287 |
| BtgI | CCRYGG | 1 cut(s) | 930 |
| BtsIMutI | CAGTG | 4 cut(s) | 252, 536, 789, 1124 |
| BveI | ACCTGC | 1 cut(s) | 1894 |
| Cac8I | GCNNGC | 5 cut(s) | 383, 387, 669, 1251, 1772 |
| CaiI | CAGNNNCTG | 4 cut(s) | 224, 707, 814, 1045 |
| CciI | TCATGA | 2 cut(s) | 850, 2092 |
| CciNI | GCGGCCGC | 1 cut(s) | 549 |
| CfoI | GCGC | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 3 cut(s) | 156, 600, 1856 |
| ClaI | ATCGAT | 1 cut(s) | 287 |
| CseI | GACGC | 1 cut(s) | 230 |
| Csp6I | GTAC | 6 cut(s) | 123, 459, 731, 841, 1426, 1533 |
| CviQI | GTAC | 6 cut(s) | 123, 459, 731, 841, 1426, 1533 |
| DpnI | GATC | 8 cut(s) | 176, 286, 684, 861, 884, 1398, 1729, 1925 |
| DpnII | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| DraI | TTTAAA | 1 cut(s) | 234 |
| EaeI | YGGCCR | 3 cut(s) | 540, 549, 1299 |
| EagI | CGGCCG | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 2 cut(s) | 1023, 1227 |
| EarI | CTCTTC | 2 cut(s) | 1023, 1227 |
| EclXI | CGGCCG | 1 cut(s) | 549 |
| Eco130I | CCWWGG | 1 cut(s) | 1775 |
| Eco24I | GRGCYC | 1 cut(s) | 1115 |
| Eco31I | GGTCTC | 2 cut(s) | 1650, 2006 |
| Eco32I | GATATC | 1 cut(s) | 937 |
| Eco47I | GGWCC | 2 cut(s) | 600, 1856 |
| Eco52I | CGGCCG | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 5 cut(s) | 287, 734, 1265, 1523, 1569 |
| Eco81I | CCTNAGG | 2 cut(s) | 315, 942 |
| Eco88I | CYCGRG | 1 cut(s) | 742 |
| Eco91I | GGTNACC | 2 cut(s) | 1071, 1556 |
| EcoO65I | GGTNACC | 2 cut(s) | 1071, 1556 |
| EcoRI | GAATTC | 1 cut(s) | 1057 |
| EcoRII | CCWGG | 4 cut(s) | 596, 760, 1836, 1885 |
| EcoRV | GATATC | 1 cut(s) | 937 |
| EcoT14I | CCWWGG | 1 cut(s) | 1775 |
| EcoT38I | GRGCYC | 1 cut(s) | 1115 |
| ErhI | CCWWGG | 1 cut(s) | 1775 |
| Esp3I | CGTCTC | 1 cut(s) | 1955 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1759, 1791 |
| FaqI | GGGAC | 6 cut(s) | 296, 679, 700, 790, 1450, 2056 |
| FauI | CCCGC | 1 cut(s) | 1211 |
| FbaI | TGATCA | 2 cut(s) | 174, 859 |
| FriOI | GRGCYC | 1 cut(s) | 1115 |
| FspBI | CTAG | 2 cut(s) | 1386, 1577 |
| GlaI | GCGC | 1 cut(s) | 358 |
| GsuI | CTGGAG | 2 cut(s) | 783, 1055 |
| HaeII | RGCGCY | 1 cut(s) | 360 |
| HaeIII | GGCC | 4 cut(s) | 157, 542, 551, 1301 |
| HapII | CCGG | 2 cut(s) | 1069, 1351 |
| HgaI | GACGC | 1 cut(s) | 230 |
| HhaI | GCGC | 1 cut(s) | 359 |
| Hin6I | GCGC | 1 cut(s) | 357 |
| HinP1I | GCGC | 1 cut(s) | 357 |
| HincII | GTYRAC | 1 cut(s) | 1449 |
| HindII | GTYRAC | 1 cut(s) | 1449 |
| HindIII | AAGCTT | 2 cut(s) | 1166, 1768 |
| HpaII | CCGG | 2 cut(s) | 1069, 1351 |
| HphI | GGTGA | 9 cut(s) | 56, 169, 692, 988, 1065, 1066, 1191, 1901, 2066 |
| Hpy166II | GTNNAC | 4 cut(s) | 252, 516, 841, 1449 |
| Hpy188III | TCNNGA | 8 cut(s) | 69, 452, 742, 851, 1154, 1748, 2093, 2130 |
| Hpy8I | GTNNAC | 4 cut(s) | 252, 516, 841, 1449 |
| HpyAV | CCTTC | 1 cut(s) | 882 |
| HpyCH4III | ACNGT | 6 cut(s) | 44, 181, 249, 256, 793, 1541 |
| HpyCH4IV | ACGT | 2 cut(s) | 150, 404 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 10, 203, 539, 548, 571, 734, 1039, 2027 |
| HpySE526I | ACGT | 2 cut(s) | 150, 404 |
| HspAI | GCGC | 1 cut(s) | 357 |
| Ksp22I | TGATCA | 2 cut(s) | 174, 859 |
| Kzo9I | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| LguI | GCTCTTC | 1 cut(s) | 1023 |
| LmnI | GCTCC | 8 cut(s) | 103, 319, 562, 1036, 1276, 1350, 1676, 2108 |
| Lsp1109I | GCAGC | 6 cut(s) | 1051, 1276, 1405, 1485, 1552, 1580 |
| LweI | GCATC | 7 cut(s) | 279, 490, 1130, 1345, 1693, 1882, 1890 |
| MaeI | CTAG | 2 cut(s) | 1386, 1577 |
| MaeII | ACGT | 2 cut(s) | 150, 404 |
| MaeIII | GTNAC | 9 cut(s) | 785, 1071, 1138, 1337, 1372, 1456, 1470, 1556, 2136 |
| MalI | GATC | 8 cut(s) | 176, 286, 684, 861, 884, 1398, 1729, 1925 |
| MboI | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| MboII | GAAGA | 8 cut(s) | 32, 49, 488, 866, 1040, 1214, 1321, 1516 |
| MfeI | CAATTG | 2 cut(s) | 390, 1295 |
| MflI | RGATCY | 1 cut(s) | 1396 |
| MhlI | GDGCHC | 2 cut(s) | 324, 1115 |
| MlsI | TGGCCA | 1 cut(s) | 542 |
| MluNI | TGGCCA | 1 cut(s) | 542 |
| MlyI | GAGTC | 7 cut(s) | 476, 772, 911, 1478, 1778, 1823, 2093 |
| MmeI | TCCRAC | 1 cut(s) | 873 |
| Mox20I | TGGCCA | 1 cut(s) | 542 |
| MroXI | GAANNNNTTC | 2 cut(s) | 83, 1615 |
| MscI | TGGCCA | 1 cut(s) | 542 |
| MseI | TTAA | 8 cut(s) | 62, 233, 273, 1269, 1479, 1737, 1794, 1950 |
| MslI | CAYNNNNRTG | 2 cut(s) | 213, 855 |
| Msp20I | TGGCCA | 1 cut(s) | 542 |
| MspI | CCGG | 2 cut(s) | 1069, 1351 |
| MspR9I | CCNGG | 5 cut(s) | 598, 762, 1352, 1838, 1887 |
| MunI | CAATTG | 2 cut(s) | 390, 1295 |
| Mva1269I | GAATGC | 2 cut(s) | 1722, 2023 |
| MvaI | CCWGG | 4 cut(s) | 598, 762, 1838, 1887 |
| MvnI | CGCG | 1 cut(s) | 2104 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 10, 203, 539, 548, 571, 734, 1039, 2027 |
| NciI | CCSGG | 1 cut(s) | 1352 |
| NdeII | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| NlaIV | GGNNCC | 1 cut(s) | 105 |
| NmeAIII | GCCGAG | 2 cut(s) | 1516, 1681 |
| NmuCI | GTSAC | 5 cut(s) | 785, 1071, 1337, 1456, 1470 |
| NotI | GCGGCCGC | 1 cut(s) | 549 |
| NspI | RCATGY | 5 cut(s) | 385, 1102, 1345, 1443, 1941 |
| PaeI | GCATGC | 1 cut(s) | 385 |
| PaeR7I | CTCGAG | 1 cut(s) | 742 |
| PagI | TCATGA | 2 cut(s) | 850, 2092 |
| PaqCI | CACCTGC | 1 cut(s) | 1894 |
| PciI | ACATGT | 2 cut(s) | 1098, 1439 |
| PciSI | GCTCTTC | 1 cut(s) | 1023 |
| PctI | GAATGC | 2 cut(s) | 1722, 2023 |
| PdmI | GAANNNNTTC | 2 cut(s) | 83, 1615 |
| PfeI | GAWTC | 7 cut(s) | 970, 1157, 1312, 1507, 1517, 1611, 1991 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1170, 1843 |
| PfoI | TCCNGGA | 3 cut(s) | 596, 1350, 1836 |
| PleI | GAGTC | 7 cut(s) | 475, 772, 910, 1477, 1778, 1823, 2093 |
| PpsI | GAGTC | 7 cut(s) | 475, 772, 910, 1477, 1778, 1823, 2093 |
| PscI | ACATGT | 2 cut(s) | 1098, 1439 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1454 |
| PshBI | ATTAAT | 2 cut(s) | 62, 1794 |
| Psp6I | CCWGG | 4 cut(s) | 596, 760, 1836, 1885 |
| PspEI | GGTNACC | 2 cut(s) | 1071, 1556 |
| PspGI | CCWGG | 4 cut(s) | 596, 760, 1836, 1885 |
| PspN4I | GGNNCC | 1 cut(s) | 105 |
| PspPI | GGNCC | 3 cut(s) | 156, 600, 1856 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 106, 138 |
| PstI | CTGCAG | 1 cut(s) | 1570 |
| PstNI | CAGNNNCTG | 4 cut(s) | 224, 707, 814, 1045 |
| PsuI | RGATCY | 1 cut(s) | 1396 |
| RsaI | GTAC | 6 cut(s) | 124, 460, 732, 842, 1427, 1534 |
| RsaNI | GTAC | 6 cut(s) | 123, 459, 731, 841, 1426, 1533 |
| RseI | CAYNNNNRTG | 2 cut(s) | 213, 855 |
| SapI | GCTCTTC | 1 cut(s) | 1023 |
| SaqAI | TTAA | 8 cut(s) | 62, 233, 273, 1269, 1479, 1737, 1794, 1950 |
| Sau3AI | GATC | 8 cut(s) | 174, 284, 682, 859, 882, 1396, 1727, 1923 |
| Sau96I | GGNCC | 3 cut(s) | 156, 600, 1856 |
| ScaI | AGTACT | 1 cut(s) | 1534 |
| SchI | GAGTC | 7 cut(s) | 476, 772, 911, 1478, 1778, 1823, 2093 |
| ScrFI | CCNGG | 5 cut(s) | 598, 762, 1352, 1838, 1887 |
| SduI | GDGCHC | 2 cut(s) | 324, 1115 |
| SfaNI | GCATC | 7 cut(s) | 279, 490, 1130, 1345, 1693, 1882, 1890 |
| SfcI | CTRYAG | 3 cut(s) | 1429, 1521, 1566 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 548 |
| Sfr274I | CTCGAG | 1 cut(s) | 742 |
| SinI | GGWCC | 2 cut(s) | 600, 1856 |
| SlaI | CTCGAG | 1 cut(s) | 742 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 213, 855 |
| SmlI | CTYRAG | 2 cut(s) | 742, 1968 |
| SmoI | CTYRAG | 2 cut(s) | 742, 1968 |
| SphI | GCATGC | 1 cut(s) | 385 |
| SspMI | CTAG | 2 cut(s) | 1386, 1577 |
| StyD4I | CCNGG | 5 cut(s) | 596, 760, 1350, 1836, 1885 |
| StyI | CCWWGG | 1 cut(s) | 1775 |
| TaaI | ACNGT | 6 cut(s) | 44, 181, 249, 256, 793, 1541 |
| TaiI | ACGT | 2 cut(s) | 153, 407 |
| TaqI | TCGA | 3 cut(s) | 287, 557, 743 |
| TatI | WGTACW | 4 cut(s) | 122, 840, 1425, 1532 |
| TauI | GCSGC | 3 cut(s) | 551, 554, 950 |
| TfiI | GAWTC | 7 cut(s) | 970, 1157, 1312, 1507, 1517, 1611, 1991 |
| Tru1I | TTAA | 8 cut(s) | 62, 233, 273, 1269, 1479, 1737, 1794, 1950 |
| Tru9I | TTAA | 8 cut(s) | 62, 233, 273, 1269, 1479, 1737, 1794, 1950 |
| TscAI | CASTG | 4 cut(s) | 259, 543, 796, 1131 |
| TseFI | GTSAC | 5 cut(s) | 785, 1071, 1337, 1456, 1470 |
| TseI | GCWGC | 7 cut(s) | 10, 1039, 1264, 1418, 1498, 1565, 1568 |
| Tsp45I | GTSAC | 5 cut(s) | 785, 1071, 1337, 1456, 1470 |
| TspDTI | ATGAA | 5 cut(s) | 284, 411, 839, 867, 2081 |
| TspGWI | ACGGA | 1 cut(s) | 947 |
| TspRI | CASTG | 4 cut(s) | 259, 543, 796, 1131 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1170, 1843 |
| VpaK11BI | GGWCC | 2 cut(s) | 600, 1856 |
| VspI | ATTAAT | 2 cut(s) | 62, 1794 |
| XapI | RAATTY | 2 cut(s) | 1057, 1238 |
| XceI | RCATGY | 5 cut(s) | 385, 1102, 1345, 1443, 1941 |
| XhoI | CTCGAG | 1 cut(s) | 742 |
| XmnI | GAANNNNTTC | 2 cut(s) | 83, 1615 |
| XspI | CTAG | 2 cut(s) | 1386, 1577 |
| ZrmI | AGTACT | 1 cut(s) | 1534 |