Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016318.1

Orthogroup ID

OG0007664

Physical Location & Seq

Genomic Coordinates Reverse (-)

11001 .. 12782

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016318.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgcccatttatcgatttttatacaatccaggtgatgaggacaagaatattgagttgaaactgagaaattttggacttgctcagcaaaactcagtggtatatattgtggccaacagttgcactagtaggaatcatgcaaagaatgttgttggcgcatgcttcgtgggtcaagacattacttgtgaaaaacttgttagggataaatttatccagttgcaaggggactatagggctatcatacagagtcttaacccattgattccaccaatatttgcatctgatgagaatgcctgctgctctgaatggagtgcagcaatggaaaagctgactggtttgacaagagatgatgttattggtaaaatgctccctggagaaatctttggagagttctgtcaattgaaaggtcaagattcgctaaccaaatttaggattgtactatatcaaggaatcattgggcaagacattgaaaagtttccatttgggttttttgatagagaagggaagtatgttgaggtgctcttaacagcaagcaagaggactgatgccaatgggaatataattggctgcttctgcttcttgcaaacatttctaccagacctgcagccagccatggaaggactcggacaagaggataaattctcttcaaaacttaaggaattaacttacatgcgacaagagatgaaaaatcctttaagtggtatccggtttacacatagactccttgaaaatacaaatgtttcagaacatcagaagcaatttcttgacactagtgatgcatgtgaaagacaaatcatggcaatccttgagaatctggatacgaggagcatagaggaaggcagcaatgtgaagctgaacatggaagaatttctcttgagaactcttatagatgccattgtgagtcaatcaatgatctcattgagggaaagaaatctacagttatttcatgagattccagaagaactcaaaacactatctttgcttggcgaccaaatcaggcttcagttggtcttgtcagatttcttgcttaatgtggtgcatcatacaccttctccagatggctgggttgaaatcagaatttcaccaggtctaaagcgaatacatgatggcaacacctatatccgtttacagttcagaatgactcaccctggtcaaggaattcccactgcacttactcaagatatgttcgccggtgaagatcattggaatacacaagaaggacttgggctaaacctgtccagaaaacttctcggtagaatgaatggtcaggtccagtatgtaagagagcatgataagtgttacttcctcattgatattgaacttagaacaaggaaagaaaggcagagggtgttaccgtcacaatctaataggagcacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

458

Amino Acids

52.4

Weight (kDa)

6.0

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18130
fragaria_vesca	FvH4_1g06850 FvH4_3g06380
malus_domestica	MD05G1291600.v1.1 MD10G1267600.v1.1
prunus_persica	Prupe.4G073900_v2.0.a1 Prupe.4G073900_v2.0.a1 Prupe.4G073900_v2.0.a1 Prupe.4G073900_v2.0.a1
pyrus_communis	pycom05g26810 pycom10g22370
rosa_chinensis	RchiOBHm_Chr5g0012921
rosa_laevigata	RLG00000031969
rosa_multiflora	Rmu_sc0006885.1_g000001 Rmu_sc0016318.1_g000002 Rmu_sc0021373.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063660
rosa_rugosa	Rorug05G0005200 Rorug05G0005300
rosa_samantha	Rh5AG099500 Rh5BG096100 Rh5CG108400 Rh5DG094800
rosa_wichuraiana	Rw5G008690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	606
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	7 cut(s)	67, 203, 422, 635, 863, 1074, 1155
AcuI	CTGAAG	1 cut(s)	983
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	426, 695, 1151
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	7 cut(s)	58, 400, 467, 645, 725, 1067, 1316
AhlI	ACTAGT	2 cut(s)	122, 767
AjnI	CCWGG	4 cut(s)	28, 367, 1081, 1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	2 cut(s)	325, 850
AluI	AGCT	2 cut(s)	325, 850
Alw21I	GWGCWC	2 cut(s)	519, 1373
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	5 cut(s)	294, 311, 564, 601, 837
ApoI	RAATTY	7 cut(s)	67, 203, 422, 635, 863, 1074, 1155
Asp700I	GAANNNNTTC	2 cut(s)	471, 864
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	1267
AsuHPI	GGTGA	4 cut(s)	44, 1071, 1133, 1202
AvaII	GGWCC	1 cut(s)	1267
BalI	TGGCCA	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	519, 1373
BbvI	GCAGC	5 cut(s)	281, 323, 551, 613, 849
BccI	CCATC	2 cut(s)	1049, 1097
BciT130I	CCWGG	4 cut(s)	30, 369, 1083, 1146
BciVI	GTATCC	2 cut(s)	710, 808
BcuI	ACTAGT	2 cut(s)	122, 767
BfaI	CTAG	2 cut(s)	123, 768
BfmI	CTRYAG	3 cut(s)	226, 599, 932
BfrI	CTTAAG	1 cut(s)	650
BfuAI	ACCTGC	1 cut(s)	606
BfuI	GTATCC	2 cut(s)	710, 808
BisI	GCNGC	5 cut(s)	295, 312, 565, 602, 838
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	5 cut(s)	296, 313, 566, 603, 839
Bme1390I	CCNGG	4 cut(s)	30, 369, 1083, 1146
Bme18I	GGWCC	1 cut(s)	1267
BmgT120I	GGNCC	1 cut(s)	1267
BmrFI	CCNGG	4 cut(s)	30, 369, 1083, 1146
BmsI	GCATC	5 cut(s)	284, 532, 763, 877, 1045
BpmI	CTGGAG	2 cut(s)	390, 1035
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	3 cut(s)	824, 892, 1158
Bsa29I	ATCGAT	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	1374
BsaJI	CCNNGG	3 cut(s)	367, 609, 1144
BsaWI	WCCGGW	1 cut(s)	702
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 1033, 1063
Bsc4I	CCNNNNNNNGG	3 cut(s)	426, 695, 1151
Bse118I	RCCGGY	1 cut(s)	1187
Bse1I	ACTGG	3 cut(s)	211, 334, 1270
Bse3DI	GCAATG	2 cut(s)	321, 847
BseBI	CCWGG	4 cut(s)	30, 369, 1083, 1146
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	367, 609, 1144
BseLI	CCNNNNNNNGG	3 cut(s)	426, 695, 1151
BseMI	GCAATG	2 cut(s)	321, 847
BseMII	CTCAG	3 cut(s)	53, 95, 105
BseNI	ACTGG	3 cut(s)	211, 334, 1270
BseRI	GAGGAG	1 cut(s)	835
BseXI	GCAGC	5 cut(s)	281, 323, 551, 613, 849
BseYI	CCCAGC	1 cut(s)	1059
BsgI	GTGCAG	2 cut(s)	330, 1149
BshFI	GGCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	519, 1373
BsiSI	CCGG	2 cut(s)	703, 1188
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	426, 695, 1151
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	519, 1373
Bsp143I	GATC	2 cut(s)	909, 1195
Bsp1720I	GCTNAGC	1 cut(s)	81
Bsp19I	CCATGG	1 cut(s)	609
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	3 cut(s)	54, 94, 104
BspDI	ATCGAT	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	943
BspMAI	CTGCAG	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	606
BspTI	CTTAAG	1 cut(s)	650
BsrDI	GCAATG	2 cut(s)	321, 847
BsrFI	RCCGGY	1 cut(s)	1187
BsrI	ACTGG	3 cut(s)	211, 334, 1270
BssAI	RCCGGY	1 cut(s)	1187
BssECI	CCNNGG	3 cut(s)	367, 609, 1144
BssMI	GATC	2 cut(s)	909, 1195
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	4 cut(s)	30, 369, 1083, 1146
Bst4CI	ACNGT	4 cut(s)	116, 936, 1128, 1353
Bst6I	CTCTTC	1 cut(s)	646
BstAFI	CTTAAG	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	1374
BstC8I	GCNNGC	4 cut(s)	157, 292, 529, 606
BstDEI	CTNAG	4 cut(s)	62, 81, 91, 1319
BstDSI	CCRYGG	1 cut(s)	609
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	912, 1198
BstMBI	GATC	2 cut(s)	909, 1195
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	4 cut(s)	30, 369, 1083, 1146
BstNSI	RCATGY	3 cut(s)	159, 670, 780
BstSCI	CCNGG	4 cut(s)	28, 367, 1081, 1144
BstSFI	CTRYAG	3 cut(s)	226, 599, 932
BstV1I	GCAGC	5 cut(s)	281, 323, 551, 613, 849
BstXI	CCANNNNNNTGG	1 cut(s)	1059
Bsu15I	ATCGAT	1 cut(s)	13
BsuI	GTATCC	2 cut(s)	710, 808
BsuRI	GGCC	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	609
BtsI	GCAGTG	1 cut(s)	1161
BtsIMutI	CAGTG	2 cut(s)	99, 1161
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	4 cut(s)	157, 292, 529, 606
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	1187
Cfr13I	GGNCC	1 cut(s)	1267
ClaI	ATCGAT	1 cut(s)	13
CsiI	ACCWGGT	1 cut(s)	1081
Csp6I	GTAC	1 cut(s)	434
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	4 cut(s)	62, 81, 91, 1319
DpnI	GATC	2 cut(s)	911, 1197
DpnII	GATC	2 cut(s)	909, 1195
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	1267
Eco57I	CTGAAG	1 cut(s)	983
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoRI	GAATTC	1 cut(s)	1155
EcoRII	CCWGG	4 cut(s)	28, 367, 1081, 1144
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	778
ErhI	CCWWGG	1 cut(s)	609
FalI	AAGNNNNNCTT	4 cut(s)	1203, 1235, 1283, 1315
FaqI	GGGAC	1 cut(s)	236
Fnu4HI	GCNGC	5 cut(s)	295, 312, 565, 602, 838
Fsp4HI	GCNGC	5 cut(s)	295, 312, 565, 602, 838
FspBI	CTAG	2 cut(s)	123, 768
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	295, 312, 565, 602, 838
GsaI	CCCAGC	1 cut(s)	1063
GsuI	CTGGAG	2 cut(s)	390, 1035
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	703, 1188
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HpaII	CCGG	2 cut(s)	703, 1188
HphI	GGTGA	4 cut(s)	44, 1071, 1133, 1202
Hpy166II	GTNNAC	2 cut(s)	708, 1124
Hpy188I	TCNGA	8 cut(s)	280, 301, 623, 742, 750, 1015, 1073, 1133
Hpy8I	GTNNAC	2 cut(s)	708, 1124
HpyAV	CCTTC	5 cut(s)	491, 608, 827, 1056, 1208
HpyCH4III	ACNGT	4 cut(s)	116, 936, 1128, 1353
HpyCH4IV	ACGT	1 cut(s)	1373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	4 cut(s)	62, 81, 91, 1319
HpySE526I	ACGT	1 cut(s)	1373
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	909, 1195
LmnI	GCTCC	3 cut(s)	369, 822, 1368
Lsp1109I	GCAGC	5 cut(s)	281, 323, 551, 613, 849
LweI	GCATC	5 cut(s)	284, 532, 763, 877, 1045
MabI	ACCWGGT	1 cut(s)	1081
MaeI	CTAG	2 cut(s)	123, 768
MaeII	ACGT	1 cut(s)	1373
MaeIII	GTNAC	3 cut(s)	1295, 1347, 1353
MalI	GATC	2 cut(s)	911, 1197
MboI	GATC	2 cut(s)	909, 1195
MboII	GAAGA	4 cut(s)	633, 872, 968, 1205
MfeI	CAATTG	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	519, 1373
MlsI	TGGCCA	1 cut(s)	110
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	5 cut(s)	253, 612, 711, 907, 1132
MnlI	CCTC	9 cut(s)	31, 505, 528, 622, 813, 823, 912, 1313, 1335
Mox20I	TGGCCA	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	778
MroXI	GAANNNNTTC	2 cut(s)	471, 864
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	6 cut(s)	249, 521, 651, 659, 692, 1026
Msp20I	TGGCCA	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	2 cut(s)	703, 1188
MspR9I	CCNGG	4 cut(s)	30, 369, 1083, 1146
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	4 cut(s)	30, 369, 1083, 1146
MwoI	GCNNNNNNNGC	1 cut(s)	570
NcoI	CCATGG	1 cut(s)	609
NdeII	GATC	2 cut(s)	909, 1195
NmuCI	GTSAC	1 cut(s)	1353
NsiI	ATGCAT	1 cut(s)	778
NspI	RCATGY	3 cut(s)	159, 670, 780
PaeI	GCATGC	1 cut(s)	159
PagI	TCATGA	1 cut(s)	943
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	471, 864
PfeI	GAWTC	6 cut(s)	130, 259, 410, 447, 808, 949
PkrI	GCNGC	5 cut(s)	296, 313, 566, 603, 839
PleI	GAGTC	5 cut(s)	252, 612, 711, 906, 1132
PpsI	GAGTC	5 cut(s)	252, 612, 711, 906, 1132
Ppu21I	YACGTR	1 cut(s)	1374
Psp6I	CCWGG	4 cut(s)	28, 367, 1081, 1144
PspFI	CCCAGC	1 cut(s)	1059
PspGI	CCWGG	4 cut(s)	28, 367, 1081, 1144
PspPI	GGNCC	1 cut(s)	1267
PstI	CTGCAG	1 cut(s)	603
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
SaqAI	TTAA	6 cut(s)	249, 521, 651, 659, 692, 1026
SatI	GCNGC	5 cut(s)	295, 312, 565, 602, 838
Sau3AI	GATC	2 cut(s)	909, 1195
Sau96I	GGNCC	1 cut(s)	1267
SchI	GAGTC	5 cut(s)	253, 612, 711, 907, 1132
ScrFI	CCNGG	4 cut(s)	30, 369, 1083, 1146
SduI	GDGCHC	2 cut(s)	519, 1373
SexAI	ACCWGGT	1 cut(s)	1081
SfaNI	GCATC	5 cut(s)	284, 532, 763, 877, 1045
SfcI	CTRYAG	3 cut(s)	226, 599, 932
SgrAI	CRCCGGYG	1 cut(s)	1187
SinI	GGWCC	1 cut(s)	1267
SmlI	CTYRAG	4 cut(s)	650, 803, 871, 1173
SmoI	CTYRAG	4 cut(s)	650, 803, 871, 1173
SpeI	ACTAGT	2 cut(s)	122, 767
SphI	GCATGC	1 cut(s)	159
SspI	AATATT	2 cut(s)	49, 270
SspMI	CTAG	2 cut(s)	123, 768
StyD4I	CCNGG	4 cut(s)	28, 367, 1081, 1144
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	4 cut(s)	116, 936, 1128, 1353
TaiI	ACGT	1 cut(s)	1376
TaqI	TCGA	1 cut(s)	13
TatI	WGTACW	1 cut(s)	433
TfiI	GAWTC	6 cut(s)	130, 259, 410, 447, 808, 949
Tru1I	TTAA	6 cut(s)	249, 521, 651, 659, 692, 1026
Tru9I	TTAA	6 cut(s)	249, 521, 651, 659, 692, 1026
TscAI	CASTG	2 cut(s)	99, 1168
TseFI	GTSAC	1 cut(s)	1353
TseI	GCWGC	5 cut(s)	294, 311, 564, 601, 837
Tsp45I	GTSAC	1 cut(s)	1353
TspDTI	ATGAA	3 cut(s)	695, 932, 1271
TspGWI	ACGGA	1 cut(s)	1109
TspRI	CASTG	2 cut(s)	99, 1168
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	1267
XagI	CCTNNNNNAGG	1 cut(s)	1149
XapI	RAATTY	7 cut(s)	67, 203, 422, 635, 863, 1074, 1155
XceI	RCATGY	3 cut(s)	159, 670, 780
XmnI	GAANNNNTTC	2 cut(s)	471, 864
XspI	CTAG	2 cut(s)	123, 768
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.