Rh5AG099500

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007664
Physical Location & Seq
Reverse (-)
9198421 .. 9203210
4790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG099500.1

Sequence Viewer

Length: 2952 bp
ATGCGTAAGCTGCTACAAGAAGAAACACCGAACAGGAAGAACGGTGATGACAACAATAAATTAATATCCAAACTTGGGAAGCGTTTCAACAATAAAAACATGGAGCCTGAGAGAACCACCAGTACATTCTCATCCTCAGCTACAAGCAACGTGAGGCCCAACAACAACACCATGATCACCGTCAAAAGAGATAAAGCAATTATTGCTCACTACAATGCAGACGCTGGACTTTTAAATGAGTTTGAACAGTCCACTGTGTCTGGTAAGTCCTTTAACTATACAAGATCGATGCTTCATCCACTTCAGTCTGTCCCTGAGGAGCACATAACTGCTTATTTCTCAAAAATCCAAAGAGGCGCTCTTGTTCAGTCTTTTGGGTGCATGCTTGCAATTGATGAACCTACGTTTAGGATTATCTGTTATAGTGAGAACTGCTCTGAGTTTTTGGGTTTGGATGGTACTTTAGAGTCAAAAGAAGAAAAGGGTCTGATTGGAATTGATGCTAAAACTCTGTTTACACCCTCATCTGGGGCTTCACTGGCCAAAGCGGCCGCTTCGAGGGAGCTATCATTGCTGAACCCAATTTGGGTGTATTCCAGGACCACCCAAAAGCCATTTTATGCTATATTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCCAAGTGTGGTGATCCTGCATTGTCCCTTGCAGGGGCTGTGCAGTCCCAGAAGCTTGCGGTTCGGGCAATCTCGAGGCTTCAGTCTCTCCCTGGAGGAGATATTGGGACTCTGTGTGACACTGTTGCGGAGGATGTTCAGAAGCTGACTGGATTTGACAGAGTTATGGTGTACAAGTTTCATGAAGATGATCATGGGGAAGTTGTGTCTGAGATCAGAAGGTCGGATTTGGAGTCCTATTTGGGGTTGCATTATCCTGCCACGGATATCCCTCAGGCGGCTCGGTTCTTGTTCAAGCAGAATCGGGTGCGGATGATTTGTGATTGCAATGCAAATCCTGTAAAACTTATTCAAAGTCAAGAGCTGGAGCAGCCTCTGTGCTTGGTGAATTCAACTCTCCGGTCACCACACGATTGCCACAGAACATACATGTCAAACATGGGCTCAGTTGCATCACTGGTCATGGCGGTTACTATCAATAGTCCTGATTCCACCAAGCTTTGGGGGTTGGTGGTGTGCCATCACACTTCACCCCGCTATGTTCCTTTCCCTCTTCGCTATGCTTGTGAATTTCTTATGCAGGCATTTGTGTTGCAGCTTAACATGGAGCTTCAGTTGGCATTACAATTGGCCGAAAAGAAGATTCTCAAAACACAGACTATACTTTGTGACATGCTCCTCCGGGATGCCCCGTCTGGTATTGTAACCCAATCTCCTAGTATAATGGATCTTGTCAAGTCTGATGGGGCTGCATTGTACTATAGTGGGACATGTTGGTTGACGGGTGTCACACCAACTGAGTCACAGGTTAAAGATATAGCCGAGTGGCTGCTGAAGAATCATGGGGATTCTACAGGACTGAGTACTGACAGTTTGGCTGAAGCTGGTTACCCTGCTGCAGCTCTACTAGGCAATGCGGTTTGTGGTATGGCTACTGCAAGAATCAGTTCAAAGGATTTTCTGTTTTGGTTCAGGTCTCACACCGCCGAGGAAGTCAAGTGGGGAGGAGCTAAGCATCATCCACAGGATAAGGATGATGGTGGAAGAATGCACCCAAGATCATCATTTAAGGCTTTTCTTGAAGTAGCGAAAAGTAGAAGCTTGCCTTGGGAGGACTCCGAGATTAATGCCATCCACTCTTTACAGCTCATAATGAGAGACTCGTTCCAGGATATGGAGGAAACTGGTCCTAAGCCAACAAATAATAATGCTCGTCCTGGTGATGCTGAGATGCAGGTGGAGGGGATGGATGAGATCAGTTCTGTGGCATGTGAAATGGTTAAATTGATTGAGACGGCTCAAGTTCCGATTTTCGGGGTTGATTCAGAGGGTCTCATCAATGGATGGAATGCAAAGATGGCTGAATTGACAGGATTACAAGATGGTGAAGCAATGGGGAAGTCCCTTGTTGATGATATTGTTCATGAGGACTCGCGTGGAGCTGTTGAAAGTATCTTATCCAGAGCGTTACAAGGTGATGAGGACAAGAATATTGAGTTGAAACTGAGAAATTTTGGACTTGCTCAGCAAAACTCAGTGGTATATATTGTGGCCAACAGTTGCACTAGTAGGAATCATGCAAAGAATGTTGTTGGCGCATGCTTCGTGGGTCAAGACATTACTTGTGAAAAACTTGTTAGGGATAAATTTATCCAGTTGCAAGGGGACTATAGGGCTATCATACAGAGTCTTAACCCATTGATTCCACCAATATTTGCATCTGATGAGAATGCCTGCTGCTCTGAATGGAGTGCAGCAATGGAAAAGCTGACTGGTTTGACAAGAGATGATGTTATTGGTAAAATGCTCCCTGGAGAAATCTTTGGAGAGTTCTGTCAATTGAAAGGTCAAGATTCGCTAACCAAATTTAGGATTGTACTATATCAAGGAATCATTGGGCAAGACATTGAAAAGTTTCCATTTGGGTTTTTTGATAGAGAAGGGAAGTATGTTGAGGTGCTCTTAACAGCAAGCAAGAGGACTGATGCCAATGGGAATATAATTGGCTGCTTCTGCTTCTTGCAAACATTTCTACCAGACCTGCAGCCAGCCATGGAAGGACTCGGACAAGAGGATAAATTCTCTTCAAAACTTAAGGAATTAACTTACATGCGACAAGAGATGAAAAATCCTTTAAGTGGTATCCGGTTTACACATAGACTCCTTGAAAATACAAATGTTTCAGAACATCAGAAGCAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATCCTTGAGAATCTGGATACGAGGAGCATAGAGGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

983

Amino Acids

109.09

Weight (kDa)

5.47

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 112 - 224 5.2e-34 PAS fold
GAF PF01590 257 - 427 1.8e-17 GAF domain
PHY PF00360 440 - 615 4.6e-57 Phytochrome region
PAS PF00989 648 - 763 3.5e-25 PAS fold
PAS_4 PF08448 655 - 764 6.6e-07 PAS fold
PAS PF00989 779 - 898 1.3e-18 PAS fold
HisKA PF00512 920 - 982 2.3e-10 His Kinase A (phospho-acceptor) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1894
Acc36I ACCTGC 2 cut(s) 1894, 2718
AccB7I CCANNNNNTGG 2 cut(s) 1170, 1843
AccII CGCG 1 cut(s) 2104
AclWI GGATC 2 cut(s) 677, 1404
AcoI YGGCCR 4 cut(s) 540, 549, 1299, 2220
AcsI RAATTY 6 cut(s) 1057, 1238, 2179, 2315, 2534, 2747
AcuI CTGAAG 5 cut(s) 287, 734, 1265, 1523, 1569
AfaI GTAC 6 cut(s) 124, 460, 842, 1427, 1534, 2547
AflII CTTAAG 1 cut(s) 2762
AflIII ACRYGT 2 cut(s) 1098, 1439
AhlI ACTAGT 2 cut(s) 2234, 2879
AjnI CCWGG 5 cut(s) 596, 760, 1836, 1885, 2479
AjuI GAANNNNNNNTTGG 2 cut(s) 1759, 1791
Alw21I GWGCWC 2 cut(s) 324, 2631
Alw26I GTCTC 5 cut(s) 759, 1650, 1821, 1955, 2006
AlwI GGATC 2 cut(s) 677, 1404
AlwNI CAGNNNCTG 4 cut(s) 224, 707, 814, 1045
Ama87I CYCGRG 1 cut(s) 742
AoxI GGCC 5 cut(s) 155, 540, 549, 1299, 2220
ApoI RAATTY 6 cut(s) 1057, 1238, 2179, 2315, 2534, 2747
AseI ATTAAT 2 cut(s) 62, 1794
Asp700I GAANNNNTTC 3 cut(s) 83, 1615, 2583
AspLEI GCGC 2 cut(s) 359, 2267
AspS9I GGNCC 3 cut(s) 156, 600, 1856
AsuC2I CCSGG 1 cut(s) 1352
AsuHPI GGTGA 9 cut(s) 56, 169, 692, 1065, 1066, 1191, 1901, 2066, 2156
AvaI CYCGRG 1 cut(s) 742
AvaII GGWCC 2 cut(s) 600, 1856
AxyI CCTNAGG 2 cut(s) 315, 942
BalI TGGCCA 2 cut(s) 542, 2222
BanII GRGCYC 1 cut(s) 1115
Bbv12I GWGCWC 2 cut(s) 324, 2631
BbvCI CCTCAGC 1 cut(s) 136
BccI CCATC 9 cut(s) 449, 1197, 1406, 1700, 1808, 1909, 2007, 2020, 2045
BceAI ACGGC 1 cut(s) 1980
BcgI CGANNNNNNTGC 2 cut(s) 1778, 1812
BciT130I CCWGG 5 cut(s) 598, 762, 1838, 1887, 2481
BciVI GTATCC 2 cut(s) 2822, 2920
BclI TGATCA 2 cut(s) 174, 859
BcnI CCSGG 1 cut(s) 1352
BcoDI GTCTC 5 cut(s) 759, 1650, 1821, 1955, 2006
BcuI ACTAGT 2 cut(s) 2234, 2879
BfaI CTAG 4 cut(s) 1386, 1577, 2235, 2880
BfmI CTRYAG 5 cut(s) 1429, 1521, 1566, 2338, 2711
BfoI RGCGCY 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 2762
BfuAI ACCTGC 2 cut(s) 1894, 2718
BfuI GTATCC 2 cut(s) 2822, 2920
BglI GCCNNNNNGGC 1 cut(s) 548
BlpI GCTNAGC 2 cut(s) 1680, 2193
BmcAI AGTACT 1 cut(s) 1534
Bme1390I CCNGG 6 cut(s) 598, 762, 1352, 1838, 1887, 2481
Bme18I GGWCC 2 cut(s) 600, 1856
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 3 cut(s) 156, 600, 1856
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 6 cut(s) 598, 762, 1352, 1838, 1887, 2481
BoxI GACNNNNGTC 1 cut(s) 1454
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 3 cut(s) 783, 1055, 2502
Bpu10I CCTNAGC 2 cut(s) 136, 1860
Bpu1102I GCTNAGC 2 cut(s) 1680, 2193
BpuEI CTTGAG 2 cut(s) 1953, 2936
BpuMI CCSGG 1 cut(s) 1352
Bsa29I ATCGAT 1 cut(s) 287
BsaI GGTCTC 2 cut(s) 1650, 2006
BsaJI CCNNGG 6 cut(s) 760, 930, 1656, 1775, 2479, 2721
BsaWI WCCGGW 2 cut(s) 1068, 2814
BsaXI ACNNNNNCTCC 6 cut(s) 1268, 1298, 1366, 1396, 2814, 2844
Bse1I ACTGG 7 cut(s) 120, 543, 823, 1131, 1858, 2323, 2446
Bse21I CCTNAGG 2 cut(s) 315, 942
Bse3DI GCAATG 5 cut(s) 569, 1003, 1588, 2067, 2433
BseBI CCWGG 5 cut(s) 598, 762, 1838, 1887, 2481
BseCI ATCGAT 1 cut(s) 287
BseDI CCNNGG 6 cut(s) 760, 930, 1656, 1775, 2479, 2721
BseMI GCAATG 5 cut(s) 569, 1003, 1588, 2067, 2433
BseNI ACTGG 7 cut(s) 120, 543, 823, 1131, 1858, 2323, 2446
BseRI GAGGAG 5 cut(s) 332, 780, 1337, 1689, 2947
BseX3I CGGCCG 1 cut(s) 549
BsgI GTGCAG 2 cut(s) 731, 2442
Bsh1236I CGCG 1 cut(s) 2104
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
BshVI ATCGAT 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 552
BsiHKAI GWGCWC 2 cut(s) 324, 2631
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 3 cut(s) 1069, 1351, 2815
BslFI GGGAC 7 cut(s) 296, 679, 700, 790, 1450, 2056, 2348
BsmAI GTCTC 5 cut(s) 759, 1650, 1821, 1955, 2006
BsmBI CGTCTC 1 cut(s) 1955
BsmFI GGGAC 7 cut(s) 296, 679, 700, 790, 1450, 2056, 2348
BsmI GAATGC 3 cut(s) 1722, 2023, 2404
BsnI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
Bso31I GGTCTC 2 cut(s) 1650, 2006
BsoBI CYCGRG 1 cut(s) 742
Bsp1286I GDGCHC 3 cut(s) 324, 1115, 2631
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
Bsp1720I GCTNAGC 2 cut(s) 1680, 2193
Bsp19I CCATGG 1 cut(s) 2721
BspANI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
BspDI ATCGAT 1 cut(s) 287
BspFNI CGCG 1 cut(s) 2104
BspHI TCATGA 2 cut(s) 850, 2092
BspLI GGNNCC 1 cut(s) 105
BspMAI CTGCAG 2 cut(s) 1570, 2715
BspMI ACCTGC 2 cut(s) 1894, 2718
BspPI GGATC 2 cut(s) 677, 1404
BspTI CTTAAG 1 cut(s) 2762
BspTNI GGTCTC 2 cut(s) 1650, 2006
BsrDI GCAATG 5 cut(s) 569, 1003, 1588, 2067, 2433
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 7 cut(s) 120, 543, 823, 1131, 1858, 2323, 2446
BssECI CCNNGG 6 cut(s) 760, 930, 1656, 1775, 2479, 2721
BssMI GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
BssT1I CCWWGG 2 cut(s) 1775, 2721
Bst2UI CCWGG 5 cut(s) 598, 762, 1838, 1887, 2481
Bst4CI ACNGT 7 cut(s) 44, 181, 249, 256, 793, 1541, 2228
Bst6I CTCTTC 2 cut(s) 1227, 2758
BstAFI CTTAAG 1 cut(s) 2762
BstAPI GCANNNNNTGC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 840
BstDSI CCRYGG 2 cut(s) 930, 2721
BstEII GGTNACC 2 cut(s) 1071, 1556
BstFNI CGCG 1 cut(s) 2104
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 359, 2267
BstKTI GATC 8 cut(s) 177, 287, 685, 862, 885, 1399, 1730, 1926
BstMAI GTCTC 5 cut(s) 759, 1650, 1821, 1955, 2006
BstMBI GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 9 cut(s) 10, 203, 539, 548, 571, 734, 1039, 2027, 2682
BstNI CCWGG 5 cut(s) 598, 762, 1838, 1887, 2481
BstNSI RCATGY 8 cut(s) 385, 1102, 1345, 1443, 1941, 2271, 2782, 2892
BstPAI GACNNNNGTC 1 cut(s) 1454
BstPI GGTNACC 2 cut(s) 1071, 1556
BstSCI CCNGG 6 cut(s) 596, 760, 1350, 1836, 1885, 2479
BstSFI CTRYAG 5 cut(s) 1429, 1521, 1566, 2338, 2711
BstUI CGCG 1 cut(s) 2104
BstX2I RGATCY 1 cut(s) 1396
BstYI RGATCY 1 cut(s) 1396
BstZI CGGCCG 1 cut(s) 549
Bsu15I ATCGAT 1 cut(s) 287
Bsu36I CCTNAGG 2 cut(s) 315, 942
BsuI GTATCC 2 cut(s) 2822, 2920
BsuRI GGCC 5 cut(s) 157, 542, 551, 1301, 2222
BsuTUI ATCGAT 1 cut(s) 287
BtgI CCRYGG 2 cut(s) 930, 2721
BtsIMutI CAGTG 5 cut(s) 252, 536, 789, 1124, 2211
BveI ACCTGC 2 cut(s) 1894, 2718
CaiI CAGNNNCTG 4 cut(s) 224, 707, 814, 1045
CciI TCATGA 2 cut(s) 850, 2092
CciNI GCGGCCGC 1 cut(s) 549
CfoI GCGC 2 cut(s) 359, 2267
Cfr13I GGNCC 3 cut(s) 156, 600, 1856
ClaI ATCGAT 1 cut(s) 287
CseI GACGC 1 cut(s) 230
Csp6I GTAC 6 cut(s) 123, 459, 841, 1426, 1533, 2546
CviQI GTAC 6 cut(s) 123, 459, 841, 1426, 1533, 2546
DpnI GATC 8 cut(s) 176, 286, 684, 861, 884, 1398, 1729, 1925
DpnII GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
DraI TTTAAA 1 cut(s) 234
EaeI YGGCCR 4 cut(s) 540, 549, 1299, 2220
EagI CGGCCG 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 1227, 2758
EarI CTCTTC 2 cut(s) 1227, 2758
EclXI CGGCCG 1 cut(s) 549
Eco130I CCWWGG 2 cut(s) 1775, 2721
Eco24I GRGCYC 1 cut(s) 1115
Eco31I GGTCTC 2 cut(s) 1650, 2006
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 2 cut(s) 600, 1856
Eco52I CGGCCG 1 cut(s) 549
Eco57I CTGAAG 5 cut(s) 287, 734, 1265, 1523, 1569
Eco81I CCTNAGG 2 cut(s) 315, 942
Eco88I CYCGRG 1 cut(s) 742
Eco91I GGTNACC 2 cut(s) 1071, 1556
EcoO65I GGTNACC 2 cut(s) 1071, 1556
EcoRI GAATTC 1 cut(s) 1057
EcoRII CCWGG 5 cut(s) 596, 760, 1836, 1885, 2479
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 1775, 2721
EcoT22I ATGCAT 1 cut(s) 2890
EcoT38I GRGCYC 1 cut(s) 1115
ErhI CCWWGG 2 cut(s) 1775, 2721
Esp3I CGTCTC 1 cut(s) 1955
FalI AAGNNNNNCTT 2 cut(s) 1759, 1791
FaqI GGGAC 7 cut(s) 296, 679, 700, 790, 1450, 2056, 2348
FauI CCCGC 1 cut(s) 1211
FbaI TGATCA 2 cut(s) 174, 859
FriOI GRGCYC 1 cut(s) 1115
FspBI CTAG 4 cut(s) 1386, 1577, 2235, 2880
GlaI GCGC 2 cut(s) 358, 2266
GsuI CTGGAG 3 cut(s) 783, 1055, 2502
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 5 cut(s) 157, 542, 551, 1301, 2222
HapII CCGG 3 cut(s) 1069, 1351, 2815
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 359, 2267
Hin6I GCGC 2 cut(s) 357, 2265
HinP1I GCGC 2 cut(s) 357, 2265
HincII GTYRAC 1 cut(s) 1449
HindII GTYRAC 1 cut(s) 1449
HindIII AAGCTT 3 cut(s) 722, 1166, 1768
HpaII CCGG 3 cut(s) 1069, 1351, 2815
HphI GGTGA 9 cut(s) 56, 169, 692, 1065, 1066, 1191, 1901, 2066, 2156
Hpy166II GTNNAC 5 cut(s) 252, 516, 841, 1449, 2820
Hpy8I GTNNAC 5 cut(s) 252, 516, 841, 1449, 2820
HpyAV CCTTC 4 cut(s) 882, 2603, 2720, 2939
HpyCH4III ACNGT 7 cut(s) 44, 181, 249, 256, 793, 1541, 2228
HpyCH4IV ACGT 2 cut(s) 150, 404
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 203, 539, 548, 571, 734, 1039, 2027, 2682
HpySE526I ACGT 2 cut(s) 150, 404
HspAI GCGC 2 cut(s) 357, 2265
Ksp22I TGATCA 2 cut(s) 174, 859
Kzo9I GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
MaeI CTAG 4 cut(s) 1386, 1577, 2235, 2880
MaeII ACGT 2 cut(s) 150, 404
MaeIII GTNAC 9 cut(s) 785, 1071, 1138, 1337, 1372, 1456, 1470, 1556, 2136
MalI GATC 8 cut(s) 176, 286, 684, 861, 884, 1398, 1729, 1925
MboI GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
MboII GAAGA 9 cut(s) 32, 49, 488, 866, 1214, 1321, 1516, 1725, 2745
MfeI CAATTG 3 cut(s) 390, 1295, 2507
MflI RGATCY 1 cut(s) 1396
MhlI GDGCHC 3 cut(s) 324, 1115, 2631
MlsI TGGCCA 2 cut(s) 542, 2222
MluNI TGGCCA 2 cut(s) 542, 2222
MmeI TCCRAC 1 cut(s) 873
Mox20I TGGCCA 2 cut(s) 542, 2222
Mph1103I ATGCAT 1 cut(s) 2890
MroXI GAANNNNTTC 3 cut(s) 83, 1615, 2583
MscI TGGCCA 2 cut(s) 542, 2222
MslI CAYNNNNRTG 2 cut(s) 213, 855
Msp20I TGGCCA 2 cut(s) 542, 2222
MspCI CTTAAG 1 cut(s) 2762
MspI CCGG 3 cut(s) 1069, 1351, 2815
MspR9I CCNGG 6 cut(s) 598, 762, 1352, 1838, 1887, 2481
MunI CAATTG 3 cut(s) 390, 1295, 2507
Mva1269I GAATGC 3 cut(s) 1722, 2023, 2404
MvaI CCWGG 5 cut(s) 598, 762, 1838, 1887, 2481
MvnI CGCG 1 cut(s) 2104
MwoI GCNNNNNNNGC 9 cut(s) 10, 203, 539, 548, 571, 734, 1039, 2027, 2682
NciI CCSGG 1 cut(s) 1352
NcoI CCATGG 1 cut(s) 2721
NdeII GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 2 cut(s) 1516, 1681
NmuCI GTSAC 5 cut(s) 785, 1071, 1337, 1456, 1470
NotI GCGGCCGC 1 cut(s) 549
NsiI ATGCAT 1 cut(s) 2890
NspI RCATGY 8 cut(s) 385, 1102, 1345, 1443, 1941, 2271, 2782, 2892
PaeI GCATGC 2 cut(s) 385, 2271
PaeR7I CTCGAG 1 cut(s) 742
PagI TCATGA 2 cut(s) 850, 2092
PaqCI CACCTGC 1 cut(s) 1894
PciI ACATGT 2 cut(s) 1098, 1439
PctI GAATGC 3 cut(s) 1722, 2023, 2404
PdmI GAANNNNTTC 3 cut(s) 83, 1615, 2583
PflMI CCANNNNNTGG 2 cut(s) 1170, 1843
PfoI TCCNGGA 3 cut(s) 596, 1350, 1836
PscI ACATGT 2 cut(s) 1098, 1439
PshAI GACNNNNGTC 1 cut(s) 1454
PshBI ATTAAT 2 cut(s) 62, 1794
Psp6I CCWGG 5 cut(s) 596, 760, 1836, 1885, 2479
PspEI GGTNACC 2 cut(s) 1071, 1556
PspGI CCWGG 5 cut(s) 596, 760, 1836, 1885, 2479
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 3 cut(s) 156, 600, 1856
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PstI CTGCAG 2 cut(s) 1570, 2715
PstNI CAGNNNCTG 4 cut(s) 224, 707, 814, 1045
PsuI RGATCY 1 cut(s) 1396
RsaI GTAC 6 cut(s) 124, 460, 842, 1427, 1534, 2547
RsaNI GTAC 6 cut(s) 123, 459, 841, 1426, 1533, 2546
RseI CAYNNNNRTG 2 cut(s) 213, 855
Sau3AI GATC 8 cut(s) 174, 284, 682, 859, 882, 1396, 1727, 1923
Sau96I GGNCC 3 cut(s) 156, 600, 1856
ScaI AGTACT 1 cut(s) 1534
ScrFI CCNGG 6 cut(s) 598, 762, 1352, 1838, 1887, 2481
SduI GDGCHC 3 cut(s) 324, 1115, 2631
SfcI CTRYAG 5 cut(s) 1429, 1521, 1566, 2338, 2711
SfiI GGCCNNNNNGGCC 1 cut(s) 548
Sfr274I CTCGAG 1 cut(s) 742
SinI GGWCC 2 cut(s) 600, 1856
SlaI CTCGAG 1 cut(s) 742
SmiMI CAYNNNNRTG 2 cut(s) 213, 855
SmlI CTYRAG 4 cut(s) 742, 1968, 2762, 2915
SmoI CTYRAG 4 cut(s) 742, 1968, 2762, 2915
SpeI ACTAGT 2 cut(s) 2234, 2879
SphI GCATGC 2 cut(s) 385, 2271
SspI AATATT 2 cut(s) 2161, 2382
SspMI CTAG 4 cut(s) 1386, 1577, 2235, 2880
StyD4I CCNGG 6 cut(s) 596, 760, 1350, 1836, 1885, 2479
StyI CCWWGG 2 cut(s) 1775, 2721
TaaI ACNGT 7 cut(s) 44, 181, 249, 256, 793, 1541, 2228
TaiI ACGT 2 cut(s) 153, 407
TaqI TCGA 3 cut(s) 287, 557, 743
TatI WGTACW 5 cut(s) 122, 840, 1425, 1532, 2545
TauI GCSGC 3 cut(s) 551, 554, 950
TscAI CASTG 5 cut(s) 259, 543, 796, 1131, 2211
TseFI GTSAC 5 cut(s) 785, 1071, 1337, 1456, 1470
Tsp45I GTSAC 5 cut(s) 785, 1071, 1337, 1456, 1470
TspDTI ATGAA 6 cut(s) 284, 411, 839, 867, 2081, 2807
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 5 cut(s) 259, 543, 796, 1131, 2211
Van91I CCANNNNNTGG 2 cut(s) 1170, 1843
Vha464I CTTAAG 1 cut(s) 2762
VpaK11BI GGWCC 2 cut(s) 600, 1856
VspI ATTAAT 2 cut(s) 62, 1794
XapI RAATTY 6 cut(s) 1057, 1238, 2179, 2315, 2534, 2747
XceI RCATGY 8 cut(s) 385, 1102, 1345, 1443, 1941, 2271, 2782, 2892
XhoI CTCGAG 1 cut(s) 742
XmnI GAANNNNTTC 3 cut(s) 83, 1615, 2583
XspI CTAG 4 cut(s) 1386, 1577, 2235, 2880
ZrmI AGTACT 1 cut(s) 1534
Zsp2I ATGCAT 1 cut(s) 2890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.