Rh5BG096100

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007664
Physical Location & Seq
Reverse (-)
8704441 .. 8709827
5387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG096100.1

Sequence Viewer

Length: 2913 bp
ATGTCCAAACTTCGGAAGCGTTTCAACAATAAAAACCAGTTCCCACAAAACCACTTGGTCTACATGGAGCCTGAGAGAACCACCGGTACATTCTCATCCTCAGCTACAAGCAACGTGAGGCCCAACAACAACACCATGATCACCGTCAAAAGAGGTAAAGCAATTATTGCTCACTACAATGCAGACGCTGGACTTTTAAATGAGTTTGAACAGTCCACTGTGTCTGGTAAGTCCTTTAACTATACAAGATCAATGCTTCATCCACTTCAGTCTGTCCCTGAGGAGCACATAACTGCTTATTTCTCAAAAATCCAAAGAGGTGCTCTTGTTCAGTCTTTTGGGTGCATGCTTGCAATTGATGAACCTACGTTTAGGATTATCTGTTATAGTGAGAACTGCTCTGAGTTTTTGGGTTTGGATGGTATTTTTGAGTCAAAAGAAGAAAAGGGTCTGATTGGAATTGATGCTAAAGCTCTGTTTACACCCTCATCTGGGGCTTCACTGGCCAAAGCGGCCGCTTCGAGGGAGCTATCATTGTTGAACCCAATTTGGGTGTATTCTAGGACCACCCAAAAGCCATTTTATGCTATATTGCATAGGATTGATGTTGGGATTGTGATTGATTTAGAGCCTGCCAAGTCTGGTGATCCTGCATTGTCCCTTGCAGGGGCTGTGCAGTCCCAGAAGCTTGCGGTTCGGGCAATCTCGAGGCTTCAGTCTCTCCCTGGAGGAGATATTGGGACTCTGTGTGATACTGTTGCGGAGGATGTTCAGAAGCTGACTGGATATGACAGAGTCATGGTGTACAAGTTTCATGAAGATGATCATGGGGAAGTTGTGTCTGAGATCAGAAGGTCGGATTTGGAGTCCTATTTGGGGTTGCATTATCCTGCCACGGATATCCCTCAGGCGGCTCGGTTCTTGTTCAAGCAGAATCGGGTGCGGATGATTTGTGATTGCAATGCAAATCCTGTAAAACTCATTCAAAGTGAAGAGCTGGAGCAGCCTCTGTGCTTGGTGAATTCAACTCTCCGGTCACCACATGATTGCCACAGAACATACATGTTAAACATGGGCTCAGTTGCATCACTGGTCATGGCGGTTACTATCAATAGTCCTGATTCGACCAAGCTTTGGGGGTTGGTGGTGTGCCATCACACTTCACCCCGCAATGTTCCTTTCCCTCTTCGCTATGCTTGTGAGTTTCTTATGCAGGCATTTGTGTTGCAGCTTAACATGGAGCTTCAGTTGGCATCACAATTGGCCGAAAAGAAGATTCTCAAAACACAGACTTTACTTTGTGACATGCTCCTCCGGGATGCCCCGTCTGGTATTGTAACCCAATCTCCTAGTATAATGGATCTGGTGAAGTCTGATGGGGCTGCATTGTACTATAGTGGGACATGTTGGTTGACGGGTGTCACACCAACTGAGTCACAGGTTAAAGATATAGCAGAGTGGCTGCTCAAGAATCATGGGGATTCTACAGGACTGAGTACTGACAGTTTGGCTGAAGCTGGTTACCCTGCTGCAGCTCTACTAGGCAATGCGGTTTGTGGTATGGCTACTGCAAGAATCAGTTCAAAGGATTTTCTGTTTTGGTTCAGGTCTCACACCGCCGAGGAAGTCAAGTGGGGAGGAGCTAAGCATCATCCAGAGGATAAGGATGATGGTGGAAGAATGCACCCAAGATCATCATTTAAGGCTTTTCTTGAAGTAGCGAAAAGTAGAAGCTTGCATTGGGAGGACTCCGAGATTAATGCCATCCACTCTTTACAGCTCATAATGAGAGACTCATTCCAGGATATGGAGGAAACTGGTCCTAAGCCAATAACTAATGCTCGTCCTGGTGATGCTGAGATGCAGGTGGAGGGGATGGATGAGATCAGTTCTGTGGCATGTGAAATGGTTAAATTGATTGAGACGGCTCAAGTTCCGATTTTCGGGGTTGATTCAGAGGGTCTCATCAATGGATGGAATGCAAAGATGGCTGAAATGACAGGATTACAAGATGGTGAAGCAATGGGGAAGTCCCTTGTTAATGATATTGTTCATGAGGACTCGCGTGGAGCTGTTCAAAGTATCTTATCCAGAGCGTTACAAGGTGATGAGGACAAGAATATTGAGTTGAAACTACGAAATTTTGGACTTCCTCAGCAAAACTCAGCGGTATATATTGTGGCCAACAGTTGCACAAGTAGGGATCATGCAAAGAATGTTGTTGGCGTATGCTTCGTGGGTCAAGACATTACTTGTGAAAAACTTGTTACGGATAAATTTATCCAGTTGCAAGGGGACTATAAGGCTATCATACAGAGTCTTAGCCCATTGATTCCACCAATATTTGCATCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCAATGGAAAAGCTGACTGGTTTGACAAGAGATGATGTTATTGGTAAAATGCTCCCTGGAGAAATCTTTGGAGAGTTCTGTCAATTGAAAGGTCAAGATTCGCTAACCAAATTTAGGATTGTACTATATCAAGGAATCATTGGGAAAGACATTGAAAAGTTTCCATTTGGGTTTTTTGATAGAGAAGGGAAGTATGTTGAGGTGATCTTAACAGCAAGCAAGAGGACTGATGCCAATGGGAATATAATTGGTTGCTTCTGCTTCTTGCAAACATTTCTACCAGACCTGCAGCCAGCCGTGGAAGGACTCGGACAAGAGGATAAATTCTCTTCAAAACTTAAGGAATTAACTTACATGCGACAAGAGATGAAAAATCCTTTAAGTGGTATCCGGTTTACACGTAGACTCCTTGAAAATACAAATGTTTCAGAATATCAGAAGCAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATCCTTGAGAATCTGGATACAAGGAGCATAGAGGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

970

Amino Acids

107.62

Weight (kDa)

5.5

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 100 - 212 7.4e-34 PAS fold
GAF PF01590 245 - 415 2.6e-17 GAF domain
PHY PF00360 428 - 603 4.8e-56 Phytochrome region
PAS PF00989 635 - 750 1.4e-24 PAS fold
PAS_4 PF08448 642 - 751 3.8e-08 PAS fold
PAS PF00989 766 - 885 3.4e-18 PAS fold
HisKA PF00512 907 - 969 9e-10 His Kinase A (phospho-acceptor) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1855
Acc36I ACCTGC 2 cut(s) 1855, 2679
AccB7I CCANNNNNTGG 2 cut(s) 1134, 1807
AccI GTMKAC 2 cut(s) 60, 2788
AccII CGCG 1 cut(s) 2065
AclWI GGATC 3 cut(s) 641, 1368, 2211
AcoI YGGCCR 4 cut(s) 504, 513, 1263, 2181
AcsI RAATTY 5 cut(s) 1021, 2140, 2276, 2495, 2708
AcuI CTGAAG 4 cut(s) 251, 698, 1229, 1533
AfaI GTAC 5 cut(s) 88, 806, 1391, 1498, 2508
AflII CTTAAG 1 cut(s) 2723
AflIII ACRYGT 3 cut(s) 1062, 1403, 2783
AgeI ACCGGT 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 2840
AjnI CCWGG 4 cut(s) 724, 1800, 1846, 2440
AjuI GAANNNNNNNTTGG 2 cut(s) 1723, 1755
Alw21I GWGCWC 2 cut(s) 288, 325
Alw26I GTCTC 5 cut(s) 723, 1614, 1785, 1916, 1967
AlwI GGATC 3 cut(s) 641, 1368, 2211
AlwNI CAGNNNCTG 4 cut(s) 188, 671, 778, 1009
Ama87I CYCGRG 1 cut(s) 706
AoxI GGCC 5 cut(s) 119, 504, 513, 1263, 2181
ApeKI GCWGC 9 cut(s) 1003, 1228, 1382, 1462, 1529, 1532, 2367, 2384, 2674
ApoI RAATTY 5 cut(s) 1021, 2140, 2276, 2495, 2708
AseI ATTAAT 1 cut(s) 1758
AsiGI ACCGGT 1 cut(s) 83
Asp700I GAANNNNTTC 3 cut(s) 20, 1579, 2544
AspS9I GGNCC 3 cut(s) 120, 564, 1820
AsuC2I CCSGG 1 cut(s) 1316
AvaI CYCGRG 1 cut(s) 706
AvaII GGWCC 2 cut(s) 564, 1820
AxyI CCTNAGG 2 cut(s) 279, 906
BalI TGGCCA 2 cut(s) 506, 2183
BanII GRGCYC 1 cut(s) 1079
Bbv12I GWGCWC 2 cut(s) 288, 325
BbvCI CCTCAGC 2 cut(s) 100, 2154
BbvI GCAGC 9 cut(s) 1015, 1240, 1369, 1449, 1516, 1544, 2354, 2396, 2686
BccI CCATC 9 cut(s) 413, 1161, 1370, 1664, 1772, 1870, 1968, 1981, 2006
BceAI ACGGC 2 cut(s) 1941, 2666
BcgI CGANNNNNNTGC 2 cut(s) 1742, 1776
BciT130I CCWGG 4 cut(s) 726, 1802, 1848, 2442
BciVI GTATCC 2 cut(s) 2783, 2881
BclI TGATCA 2 cut(s) 138, 823
BcnI CCSGG 1 cut(s) 1316
BcoDI GTCTC 5 cut(s) 723, 1614, 1785, 1916, 1967
BcuI ACTAGT 1 cut(s) 2840
BfaI CTAG 4 cut(s) 561, 1350, 1541, 2841
BfmI CTRYAG 4 cut(s) 1393, 1485, 1530, 2672
BfrI CTTAAG 1 cut(s) 2723
BfuAI ACCTGC 2 cut(s) 1855, 2679
BfuI GTATCC 2 cut(s) 2783, 2881
BglI GCCNNNNNGGC 1 cut(s) 512
BlpI GCTNAGC 1 cut(s) 1644
BmcAI AGTACT 1 cut(s) 1498
Bme1390I CCNGG 5 cut(s) 726, 1316, 1802, 1848, 2442
Bme18I GGWCC 2 cut(s) 564, 1820
BmeT110I CYCGRG 1 cut(s) 706
BmgT120I GGNCC 3 cut(s) 120, 564, 1820
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 5 cut(s) 726, 1316, 1802, 1848, 2442
BoxI GACNNNNGTC 1 cut(s) 1418
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 3 cut(s) 747, 1019, 2463
Bpu10I CCTNAGC 3 cut(s) 100, 1824, 2154
Bpu1102I GCTNAGC 1 cut(s) 1644
BpuEI CTTGAG 3 cut(s) 1451, 1914, 2897
BpuMI CCSGG 1 cut(s) 1316
BsaAI YACGTR 1 cut(s) 2786
BsaI GGTCTC 2 cut(s) 1614, 1967
BsaJI CCNNGG 5 cut(s) 724, 894, 1620, 2440, 2682
BsaWI WCCGGW 3 cut(s) 83, 1032, 2775
BsaXI ACNNNNNCTCC 6 cut(s) 1232, 1262, 1330, 1360, 2775, 2805
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 7 cut(s) 37, 507, 787, 1095, 1822, 2284, 2407
Bse21I CCTNAGG 2 cut(s) 279, 906
Bse3DI GCAATG 5 cut(s) 967, 1177, 1552, 2028, 2394
BseBI CCWGG 4 cut(s) 726, 1802, 1848, 2442
BseDI CCNNGG 5 cut(s) 724, 894, 1620, 2440, 2682
BseMI GCAATG 5 cut(s) 967, 1177, 1552, 2028, 2394
BseNI ACTGG 7 cut(s) 37, 507, 787, 1095, 1822, 2284, 2407
BseRI GAGGAG 4 cut(s) 296, 744, 1301, 1653
BseX3I CGGCCG 1 cut(s) 513
BseXI GCAGC 9 cut(s) 1015, 1240, 1369, 1449, 1516, 1544, 2354, 2396, 2686
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 2065
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 5 cut(s) 121, 506, 515, 1265, 2183
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 288, 325
BsiHKCI CYCGRG 1 cut(s) 706
BsiSI CCGG 4 cut(s) 84, 1033, 1315, 2776
BslFI GGGAC 7 cut(s) 260, 643, 664, 754, 1414, 2017, 2309
BsmAI GTCTC 5 cut(s) 723, 1614, 1785, 1916, 1967
BsmBI CGTCTC 1 cut(s) 1916
BsmFI GGGAC 7 cut(s) 260, 643, 664, 754, 1414, 2017, 2309
BsmI GAATGC 4 cut(s) 1686, 1984, 2365, 2386
BsnI GGCC 5 cut(s) 121, 506, 515, 1265, 2183
Bso31I GGTCTC 2 cut(s) 1614, 1967
BsoBI CYCGRG 1 cut(s) 706
Bsp1286I GDGCHC 3 cut(s) 288, 325, 1079
Bsp1407I TGTACA 1 cut(s) 804
Bsp1720I GCTNAGC 1 cut(s) 1644
BspANI GGCC 5 cut(s) 121, 506, 515, 1265, 2183
BspFNI CGCG 1 cut(s) 2065
BspHI TCATGA 2 cut(s) 814, 2053
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 2 cut(s) 1534, 2676
BspMI ACCTGC 2 cut(s) 1855, 2679
BspPI GGATC 3 cut(s) 641, 1368, 2211
BspQI GCTCTTC 1 cut(s) 987
BspTI CTTAAG 1 cut(s) 2723
BspTNI GGTCTC 2 cut(s) 1614, 1967
BsrDI GCAATG 5 cut(s) 967, 1177, 1552, 2028, 2394
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 7 cut(s) 37, 507, 787, 1095, 1822, 2284, 2407
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 5 cut(s) 724, 894, 1620, 2440, 2682
Bst2UI CCWGG 4 cut(s) 726, 1802, 1848, 2442
Bst4CI ACNGT 6 cut(s) 145, 213, 220, 757, 1505, 2189
Bst6I CTCTTC 3 cut(s) 987, 1191, 2719
BstAFI CTTAAG 1 cut(s) 2723
BstAPI GCANNNNNTGC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 804
BstBAI YACGTR 1 cut(s) 2786
BstC8I GCNNGC 9 cut(s) 347, 351, 633, 690, 1215, 1736, 2365, 2602, 2679
BstDSI CCRYGG 2 cut(s) 894, 2682
BstEII GGTNACC 2 cut(s) 1035, 1520
BstFNI CGCG 1 cut(s) 2065
BstMAI GTCTC 5 cut(s) 723, 1614, 1785, 1916, 1967
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 6 cut(s) 167, 503, 512, 698, 1003, 1988
BstNI CCWGG 4 cut(s) 726, 1802, 1848, 2442
BstNSI RCATGY 7 cut(s) 349, 1066, 1309, 1407, 1902, 2743, 2853
BstPAI GACNNNNGTC 1 cut(s) 1418
BstPI GGTNACC 2 cut(s) 1035, 1520
BstSCI CCNGG 5 cut(s) 724, 1314, 1800, 1846, 2440
BstSFI CTRYAG 4 cut(s) 1393, 1485, 1530, 2672
BstUI CGCG 1 cut(s) 2065
BstV1I GCAGC 9 cut(s) 1015, 1240, 1369, 1449, 1516, 1544, 2354, 2396, 2686
BstX2I RGATCY 1 cut(s) 1360
BstYI RGATCY 1 cut(s) 1360
BstZI CGGCCG 1 cut(s) 513
Bsu36I CCTNAGG 2 cut(s) 279, 906
BsuI GTATCC 2 cut(s) 2783, 2881
BsuRI GGCC 5 cut(s) 121, 506, 515, 1265, 2183
BtgI CCRYGG 2 cut(s) 894, 2682
BtsIMutI CAGTG 3 cut(s) 216, 500, 1088
BveI ACCTGC 2 cut(s) 1855, 2679
Cac8I GCNNGC 9 cut(s) 347, 351, 633, 690, 1215, 1736, 2365, 2602, 2679
CaiI CAGNNNCTG 4 cut(s) 188, 671, 778, 1009
CciI TCATGA 2 cut(s) 814, 2053
CciNI GCGGCCGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 120, 564, 1820
CseI GACGC 1 cut(s) 194
Csp6I GTAC 5 cut(s) 87, 805, 1390, 1497, 2507
CspAI ACCGGT 1 cut(s) 83
CviQI GTAC 5 cut(s) 87, 805, 1390, 1497, 2507
DraI TTTAAA 1 cut(s) 198
EaeI YGGCCR 4 cut(s) 504, 513, 1263, 2181
EagI CGGCCG 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 987, 1191, 2719
EarI CTCTTC 3 cut(s) 987, 1191, 2719
EclXI CGGCCG 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 1079
Eco31I GGTCTC 2 cut(s) 1614, 1967
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 2 cut(s) 564, 1820
Eco52I CGGCCG 1 cut(s) 513
Eco57I CTGAAG 4 cut(s) 251, 698, 1229, 1533
Eco81I CCTNAGG 2 cut(s) 279, 906
Eco88I CYCGRG 1 cut(s) 706
Eco91I GGTNACC 2 cut(s) 1035, 1520
EcoO65I GGTNACC 2 cut(s) 1035, 1520
EcoRI GAATTC 1 cut(s) 1021
EcoRII CCWGG 4 cut(s) 724, 1800, 1846, 2440
EcoRV GATATC 1 cut(s) 901
EcoT22I ATGCAT 1 cut(s) 2851
EcoT38I GRGCYC 1 cut(s) 1079
Esp3I CGTCTC 1 cut(s) 1916
FaqI GGGAC 7 cut(s) 260, 643, 664, 754, 1414, 2017, 2309
FauI CCCGC 1 cut(s) 1175
FbaI TGATCA 2 cut(s) 138, 823
FblI GTMKAC 2 cut(s) 60, 2788
FriOI GRGCYC 1 cut(s) 1079
FspBI CTAG 4 cut(s) 561, 1350, 1541, 2841
GsuI CTGGAG 3 cut(s) 747, 1019, 2463
HaeIII GGCC 5 cut(s) 121, 506, 515, 1265, 2183
HapII CCGG 4 cut(s) 84, 1033, 1315, 2776
HgaI GACGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 1413
HindII GTYRAC 1 cut(s) 1413
HindIII AAGCTT 3 cut(s) 686, 1130, 1732
HpaII CCGG 4 cut(s) 84, 1033, 1315, 2776
Hpy166II GTNNAC 7 cut(s) 61, 216, 480, 805, 1413, 2781, 2789
Hpy8I GTNNAC 7 cut(s) 61, 216, 480, 805, 1413, 2781, 2789
HpyAV CCTTC 4 cut(s) 846, 2564, 2681, 2900
HpyCH4III ACNGT 6 cut(s) 145, 213, 220, 757, 1505, 2189
HpyCH4IV ACGT 3 cut(s) 114, 368, 2785
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 503, 512, 698, 1003, 1988
HpySE526I ACGT 3 cut(s) 114, 368, 2785
Ksp22I TGATCA 2 cut(s) 138, 823
LguI GCTCTTC 1 cut(s) 987
Lsp1109I GCAGC 9 cut(s) 1015, 1240, 1369, 1449, 1516, 1544, 2354, 2396, 2686
MaeI CTAG 4 cut(s) 561, 1350, 1541, 2841
MaeII ACGT 3 cut(s) 114, 368, 2785
MaeIII GTNAC 9 cut(s) 1035, 1102, 1301, 1336, 1420, 1434, 1520, 2097, 2266
MboII GAAGA 7 cut(s) 452, 830, 1004, 1178, 1285, 1689, 2706
MfeI CAATTG 3 cut(s) 354, 1259, 2468
MflI RGATCY 1 cut(s) 1360
MhlI GDGCHC 3 cut(s) 288, 325, 1079
MlsI TGGCCA 2 cut(s) 506, 2183
MluNI TGGCCA 2 cut(s) 506, 2183
MmeI TCCRAC 1 cut(s) 837
Mox20I TGGCCA 2 cut(s) 506, 2183
Mph1103I ATGCAT 1 cut(s) 2851
MroXI GAANNNNTTC 3 cut(s) 20, 1579, 2544
MscI TGGCCA 2 cut(s) 506, 2183
MslI CAYNNNNRTG 2 cut(s) 177, 819
Msp20I TGGCCA 2 cut(s) 506, 2183
MspA1I CMGCKG 1 cut(s) 2168
MspCI CTTAAG 1 cut(s) 2723
MspI CCGG 4 cut(s) 84, 1033, 1315, 2776
MspR9I CCNGG 5 cut(s) 726, 1316, 1802, 1848, 2442
MunI CAATTG 3 cut(s) 354, 1259, 2468
Mva1269I GAATGC 4 cut(s) 1686, 1984, 2365, 2386
MvaI CCWGG 4 cut(s) 726, 1802, 1848, 2442
MvnI CGCG 1 cut(s) 2065
MwoI GCNNNNNNNGC 6 cut(s) 167, 503, 512, 698, 1003, 1988
NciI CCSGG 1 cut(s) 1316
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 1645
NmuCI GTSAC 4 cut(s) 1035, 1301, 1420, 1434
NotI GCGGCCGC 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 2851
NspI RCATGY 7 cut(s) 349, 1066, 1309, 1407, 1902, 2743, 2853
PaeI GCATGC 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 706
PagI TCATGA 2 cut(s) 814, 2053
PaqCI CACCTGC 1 cut(s) 1855
PciI ACATGT 2 cut(s) 1062, 1403
PciSI GCTCTTC 1 cut(s) 987
PctI GAATGC 4 cut(s) 1686, 1984, 2365, 2386
PdmI GAANNNNTTC 3 cut(s) 20, 1579, 2544
PflFI GACNNNGTC 1 cut(s) 794
PflMI CCANNNNNTGG 2 cut(s) 1134, 1807
PfoI TCCNGGA 2 cut(s) 1314, 1800
PinAI ACCGGT 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 2786
PscI ACATGT 2 cut(s) 1062, 1403
PshAI GACNNNNGTC 1 cut(s) 1418
PshBI ATTAAT 1 cut(s) 1758
Psp6I CCWGG 4 cut(s) 724, 1800, 1846, 2440
PspEI GGTNACC 2 cut(s) 1035, 1520
PspGI CCWGG 4 cut(s) 724, 1800, 1846, 2440
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 3 cut(s) 120, 564, 1820
PsrI GAACNNNNNNTAC 2 cut(s) 70, 102
PstI CTGCAG 2 cut(s) 1534, 2676
PstNI CAGNNNCTG 4 cut(s) 188, 671, 778, 1009
PsuI RGATCY 1 cut(s) 1360
PsyI GACNNNGTC 1 cut(s) 794
RsaI GTAC 5 cut(s) 88, 806, 1391, 1498, 2508
RsaNI GTAC 5 cut(s) 87, 805, 1390, 1497, 2507
RseI CAYNNNNRTG 2 cut(s) 177, 819
SapI GCTCTTC 1 cut(s) 987
Sau96I GGNCC 3 cut(s) 120, 564, 1820
ScaI AGTACT 1 cut(s) 1498
ScrFI CCNGG 5 cut(s) 726, 1316, 1802, 1848, 2442
SduI GDGCHC 3 cut(s) 288, 325, 1079
SfcI CTRYAG 4 cut(s) 1393, 1485, 1530, 2672
SfiI GGCCNNNNNGGCC 1 cut(s) 512
Sfr274I CTCGAG 1 cut(s) 706
SinI GGWCC 2 cut(s) 564, 1820
SlaI CTCGAG 1 cut(s) 706
SmiMI CAYNNNNRTG 2 cut(s) 177, 819
SmlI CTYRAG 5 cut(s) 706, 1466, 1929, 2723, 2876
SmoI CTYRAG 5 cut(s) 706, 1466, 1929, 2723, 2876
SpeI ACTAGT 1 cut(s) 2840
SphI GCATGC 1 cut(s) 349
SspI AATATT 2 cut(s) 2122, 2343
SspMI CTAG 4 cut(s) 561, 1350, 1541, 2841
StyD4I CCNGG 5 cut(s) 724, 1314, 1800, 1846, 2440
TaaI ACNGT 6 cut(s) 145, 213, 220, 757, 1505, 2189
TaiI ACGT 3 cut(s) 117, 371, 2788
TaqI TCGA 3 cut(s) 521, 707, 1124
TatI WGTACW 4 cut(s) 804, 1389, 1496, 2506
TauI GCSGC 3 cut(s) 515, 518, 914
TscAI CASTG 3 cut(s) 223, 507, 1095
TseFI GTSAC 4 cut(s) 1035, 1301, 1420, 1434
TseI GCWGC 9 cut(s) 1003, 1228, 1382, 1462, 1529, 1532, 2367, 2384, 2674
Tsp45I GTSAC 4 cut(s) 1035, 1301, 1420, 1434
TspDTI ATGAA 6 cut(s) 248, 375, 803, 831, 2042, 2768
TspGWI ACGGA 2 cut(s) 911, 2285
TspRI CASTG 3 cut(s) 223, 507, 1095
Tth111I GACNNNGTC 1 cut(s) 794
Van91I CCANNNNNTGG 2 cut(s) 1134, 1807
Vha464I CTTAAG 1 cut(s) 2723
VpaK11BI GGWCC 2 cut(s) 564, 1820
VspI ATTAAT 1 cut(s) 1758
XapI RAATTY 5 cut(s) 1021, 2140, 2276, 2495, 2708
XceI RCATGY 7 cut(s) 349, 1066, 1309, 1407, 1902, 2743, 2853
XhoI CTCGAG 1 cut(s) 706
XmiI GTMKAC 2 cut(s) 60, 2788
XmnI GAANNNNTTC 3 cut(s) 20, 1579, 2544
XspI CTAG 4 cut(s) 561, 1350, 1541, 2841
ZrmI AGTACT 1 cut(s) 1498
Zsp2I ATGCAT 1 cut(s) 2851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.