FvH4_3g06380

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007664
Physical Location & Seq
Forward (+)
3668727 .. 3672957
4231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06380.t1

Sequence Viewer

Length: 3489 bp
ATGACAGAGATAGAAGCAGCAAGTACAGTGATGAAAAACAATAAATGTCCGAACTTTCCAAGCTTAGAAGCCATCATTTCTTACTCTATGGAACCTGAGAAAGCCACCGTTACATCCTCATCCTCCGCCGCAAGCAACATGAGGGCCAAGAACACCACCACCACTACCACCACCATCGCCGCCAACAACGACCAAACAATCGTTCACTGCAATGCAGACGCTGGCCTTTTAAGTGAGTTTGAACAGTCCACTGTGTCTGGTAAGTCCTTCAACTACACGAGATCAACCATCAATGCACCGCACTCTGTCCCTGAAGAGCGCATAACCGCTTACTTCTCCAGAATCCAAAGAGGCGCTCTTGTGCAGTCTTTTGGCTGCATGCTTGCAGTTGATGAAGCAACGTTCAAGGTCATTTGCTACAGTGAGAACTGCTTTGACCTTTTGGGTTTGAATGTTAGTTCTTCCACGTCGAAACAAGTAAAGACTCTGATTGGAGTTGATGCTAGAGCCCTGTTTATACCCTCATCCGGGGATTCACTGGCCAGAGCGTCTACGGCCAGAGAGTTGTCATTGTTGAACCCAGTTTGGGTGTATTCCAGGACTACACAGAAGCCATTTTATGCTATATTGCATAGGATTGATGTTGGGATTGTGATTGATTTGGAGCCTGCTAAGTCCCGTGATCCTGCATTGTCCCTTGCAGGGGCTGTGCAGTCCCAGAAGCTTGCGGTGCGGGCAATTTCGAAGCTGCAGGCTATTCCTGGAGGAGATATTGGAGCTTTGTGTGACACTGTGGTGGAGAATGTTCAGAAGCTTACTGGATATGATAGAGTCATGGTGTACAAGTTCCATGAAGATGATCACGGGGAAGTTGTGTCTGAGATCAGAAGGGCGGATTTGGAGTCCTATTTGGGGTTGCATTATCCTGCAACGGATATCCCTCAAGCGGCTCGGTTCTTGTTCAAGCAAAATCGGGTGCGGATAATTTGTGATTGCAATGCAGATCCTGTTAATCTTGTCCATAGTGAAGAGCTAAAGCAGCCTCTATTGTTGGTGAATTCAACTCTCCGGGCACCACATGGCTGTCACAGACAGTACATGGCCAACATGGGCTCGACTGCGTCACTGGTTCTGGCGGTTACTGTGAATAGTGCTGAATCAATCAAGCTATGGGGGTTGGTGGTGTGCCATCACACTTCACCTCGCTACGTTCCTTTCCCTCTTCGCTATGCTTGTGAGCTTCTTATACAAGCATTTGGGCTGCAGCTCAATATGGAGTTTCAGTTGGCATTACAATTGGCCGAAAAGAAGATTCTCAAAACACAGACTTTGCTTTGTGACATGCTCCTCCGGGATGCTCCATCTGGTATTGTAACTCAGTCTCCCAGTATAATGGATATTGTGAAATGTGATGGGGCTGCGTTGTACTATAATGGAACATGTTGGTTGATGGGTGTCACACCAACTGAATCACAGGTTAAAAGTATAGTTGAGTGGCTGCTAAAGAATCATGGGGACTCTACAGGCCTGAGTACTGACGGTTTGGCTGAAGCTGGTTACCCTGATGCAGCTTCACTAGGGAATGCGGTATGCGGTCTGGCTACTGCTAGAATCAGTTCAAATGATTTTCTGTTTTGGTTCAGATCTCAGACCGCCAATGAAGTCTTGTGGGGAGGAGCTGAGCATGATCCACATGATAAGGATGATGGTGAAAGAATGCACCCAAGAACATCATTCAAGGCTTTTCTTGAAGTAGCGAAAAGTAGAAGCTTGCCTTGGGAGGTGTCTGAGATTAATGCCATCCACTCTATACAGCTCATAATGAGAGACTCGTTCCAGGAAATGGAGGAAACTGGCCTTAAGGCAATAAAGCATGCTAGTCCTAGTGGTACTGCGAAGCAGTCCCAAGGCATGGATGGGATCAGTTCTGTGGCATGTGAAATGGTCAAATTGATCGAGACAGCTCAAGTTCCAATTTTCGGGGTTGATTCAGAAGGTCTCATCAATGGATGGAATGCAAAGATAGCTGAATTGACAGGATTAGTAGATAGTGAAGCAATGGGGAAGTCCCTTGTTAATGATATTGTTCATGAGGACTCGCGTGGAGATGTTGAAGGTATCTTATCCAGAGCGTTACAAGGTGATGAAGACAAAAATATCGAGCTGAAACTGAGGAATTTTGGACCTCCTCAGCAGAACTCAGACGTATATATTGTGGCCAACAGTTGCACAAGCAGGAATCGTGCAAATAATGTTGTTGGCGTTTGCTTTGTGGGTCAAGACATTACTTGTGAAAAACTTGTTACGGATAAATTCGTCCGCTTGCAAGGGGATTATAAGGCTATCATACAAAGCCTTAACCCATTGATTCCACCAATATTTGCATCTGATGAGAATGCGTGCTGCTCTGAATGGAATGCAGCAATGGGGAAGCTGACTGGTGTGACAAGAGATGAGGCTATTGGTAAAATGCTCCCTGGGGAAATATTTGGAGACTACTGTCGGTTGAAAGGCAAAGATTCAATGACTAAATTTATGATTGTATTATATCAAGGAATCAGTGGGCAAGAAATTGAGAAGTTTCCGTTTGGTTTTTTTGATAGAGAAGGGAAGTATGTTGAAGTGCTCTTAACAGCAAACAAGAGGACTGATGCCAATGAGAATATAATTGGTTGCTTCTGCTTCTTGCAAATATTTCAGCCTGACCTGCAGTCGGCCATGGAAGGACTCAGACAAGAGGATAGTAATTCTTCTTCAAAACTTAAGGAATTGATTTACATGCGCCAAGAGATGAAAAATCCTTTGAATGGTATCAGGTTTACTCACAAACTCCTTGAAAATACGATTATTTCTAGTTATCAGAAGCAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATCCTTGAGAATATGGATACGAGGAGCATAGAGCAAGGCAGTGTGGTGCTGAACATGGAAGAATTTCTCTTAGGAAGTGTTTTGGATGCCATTGTGAGTCAATCAATGATCTCACTGAGGCAAAGAAATGTACAGTTTTTGCATGAGGTTCCAAACGAAATTAAATCTCTATATTTGCATGGCGACCGAATCAAGCTTCAGTTGGTTCTGTCAGATTTCTTGCTTAATGTGGTGCTTCATGCATCTCCAAATGGCTGGGTTGAAATCAGAATTTCACCAGGTCTAAAACTAATAAAGGACGGCAATAGCTATATCCGTTTACAGTTCAGAATGACTCTCTCTGGTCAAGGGCTTCCAACTGCACTAATCGAAGATATGCTTGATGATGGAAATCGATGGACTACGCAAGAAGGGCTTGGGCTAAACCTATCCAGGAAACTTCTCAGCAGAATGAATGGTCGAGTGCAGTATGTTAGAGAGCATGATAAGTGTTACTTCCTCATTGACATTGAACTTGGAACAAGGAAAGAAAGGCAGATGATGTTACTGACACAAGCAGATAAGAGCGCATCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1163

Amino Acids

128.62

Weight (kDa)

5.63

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 111 - 224 7.4e-32 PAS fold
GAF PF01590 257 - 425 3.2e-16 GAF domain
PHY PF00360 440 - 615 2.5e-54 Phytochrome region
PAS PF00989 647 - 762 3.4e-23 PAS fold
PAS_4 PF08448 654 - 763 1.4e-06 PAS fold
PAS PF00989 778 - 897 1.6e-18 PAS fold
HisKA PF00512 926 - 982 8.7e-08 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1031 - 1131 2.2e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2337
Acc36I ACCTGC 1 cut(s) 2715
AccB1I GGYRCC 1 cut(s) 1072
AccB7I CCANNNNNTGG 2 cut(s) 1843, 1912
AccI GTMKAC 1 cut(s) 551
AccII CGCG 1 cut(s) 2101
AclI AACGTT 1 cut(s) 401
AclWI GGATC 4 cut(s) 677, 998, 1682, 1928
AcoI YGGCCR 6 cut(s) 540, 555, 1101, 1299, 2217, 2715
AcsI RAATTY 6 cut(s) 1057, 2176, 2312, 2531, 2972, 3180
AcuI CTGAAG 3 cut(s) 333, 1569, 3092
AfaI GTAC 7 cut(s) 25, 842, 1097, 1427, 1534, 1891, 3042
AflII CTTAAG 2 cut(s) 1859, 2762
AflIII ACRYGT 1 cut(s) 1439
AhdI GACNNNNNGTC 1 cut(s) 2710
AhlI ACTAGT 1 cut(s) 2879
AjiI CACGTC 1 cut(s) 468
AjnI CCWGG 6 cut(s) 596, 760, 1836, 2476, 3187, 3341
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 1759, 1791
AleI CACNNNNGTG 1 cut(s) 794
Alw21I GWGCWC 1 cut(s) 2628
Alw26I GTCTC 5 cut(s) 1386, 1821, 1952, 2003, 2487
AlwI GGATC 4 cut(s) 677, 998, 1682, 1928
AlwNI CAGNNNCTG 3 cut(s) 221, 707, 1007
ApoI RAATTY 6 cut(s) 1057, 2176, 2312, 2531, 2972, 3180
AseI ATTAAT 1 cut(s) 1794
Asp700I GAANNNNTTC 2 cut(s) 1615, 2973
AspLEI GCGC 4 cut(s) 321, 356, 2784, 3479
AspS9I GGNCC 2 cut(s) 144, 2183
AsuC2I CCSGG 3 cut(s) 529, 1070, 1352
AsuHPI GGTGA 6 cut(s) 1066, 1191, 1721, 2153, 3177, 3474
AsuII TTCGAA 1 cut(s) 743
AvaII GGWCC 1 cut(s) 2183
BaeGI GKGCMC 1 cut(s) 1075
BalI TGGCCA 3 cut(s) 542, 1103, 2219
BanI GGYRCC 1 cut(s) 1072
BanII GRGCYC 2 cut(s) 511, 1115
BarI GAAGNNNNNNTAC 2 cut(s) 2737, 2769
BauI CACGAG 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 2154
Bbv12I GWGCWC 1 cut(s) 2628
BbvCI CCTCAGC 1 cut(s) 2190
BceAI ACGGC 2 cut(s) 570, 3226
BciT130I CCWGG 6 cut(s) 598, 762, 1838, 2478, 3189, 3343
BciVI GTATCC 1 cut(s) 2920
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 3 cut(s) 529, 1070, 1352
BcoDI GTCTC 5 cut(s) 1386, 1821, 1952, 2003, 2487
BcuI ACTAGT 1 cut(s) 2879
BfaI CTAG 7 cut(s) 504, 1577, 1608, 1878, 1884, 2853, 2880
BfmI CTRYAG 5 cut(s) 418, 749, 1262, 1521, 2708
BfoI RGCGCY 1 cut(s) 357
BfrI CTTAAG 2 cut(s) 1859, 2762
BfuAI ACCTGC 1 cut(s) 2715
BfuI GTATCC 1 cut(s) 2920
BglII AGATCT 1 cut(s) 1643
BlpI GCTNAGC 1 cut(s) 1680
BmcAI AGTACT 1 cut(s) 1534
Bme1390I CCNGG 9 cut(s) 529, 598, 762, 1070, 1352, 1838, 2478, 3189, 3343
Bme18I GGWCC 1 cut(s) 2183
BmeRI GACNNNNNGTC 1 cut(s) 2710
BmgBI CACGTC 1 cut(s) 468
BmgT120I GGNCC 2 cut(s) 144, 2183
BmiI GGNNCC 4 cut(s) 93, 666, 1074, 3060
BmrFI CCNGG 9 cut(s) 529, 598, 762, 1070, 1352, 1838, 2478, 3189, 3343
BmrI ACTGGG 2 cut(s) 575, 1380
BmsI GCATC 8 cut(s) 490, 1345, 1555, 2393, 2641, 2875, 2986, 3161
BmuI ACTGGG 2 cut(s) 575, 1380
BoxI GACNNNNGTC 1 cut(s) 2499
BpiI GAAGAC 1 cut(s) 2154
BpmI CTGGAG 2 cut(s) 322, 783
Bpu10I CCTNAGC 1 cut(s) 2190
Bpu1102I GCTNAGC 1 cut(s) 1680
Bpu14I TTCGAA 1 cut(s) 743
BpuEI CTTGAG 3 cut(s) 927, 1950, 2936
BpuMI CCSGG 3 cut(s) 529, 1070, 1352
Bsa29I ATCGAT 1 cut(s) 3304
BsaBI GATNNNNATC 1 cut(s) 3300
BsaI GGTCTC 1 cut(s) 2003
BsaJI CCNNGG 6 cut(s) 528, 1775, 1906, 2476, 2477, 2718
BsaXI ACNNNNNCTCC 4 cut(s) 1268, 1298, 1366, 1396
Bse1I ACTGG 7 cut(s) 543, 581, 823, 1131, 1386, 1858, 2443
Bse3DI GCAATG 4 cut(s) 217, 1003, 2064, 2430
Bse8I GATNNNNATC 1 cut(s) 3300
BseBI CCWGG 6 cut(s) 598, 762, 1838, 2478, 3189, 3343
BseCI ATCGAT 1 cut(s) 3304
BseDI CCNNGG 6 cut(s) 528, 1775, 1906, 2476, 2477, 2718
BseGI GGATG 9 cut(s) 113, 119, 524, 1360, 1708, 1800, 1921, 2015, 3001
BseJI GATNNNNATC 1 cut(s) 3300
BseMI GCAATG 4 cut(s) 217, 1003, 2064, 2430
BseNI ACTGG 7 cut(s) 543, 581, 823, 1131, 1386, 1858, 2443
BseRI GAGGAG 5 cut(s) 780, 1337, 1689, 2178, 2947
BseSI GKGCMC 1 cut(s) 1075
BseYI CCCAGC 1 cut(s) 3165
BsgI GTGCAG 4 cut(s) 383, 731, 3255, 3395
Bsh1236I CGCG 1 cut(s) 2101
Bsh1285I CGRYCG 1 cut(s) 3097
BshNI GGYRCC 1 cut(s) 1072
BshVI ATCGAT 1 cut(s) 3304
BsiEI CGRYCG 1 cut(s) 3097
BsiHKAI GWGCWC 1 cut(s) 2628
BsiSI CCGG 3 cut(s) 528, 1069, 1351
BslFI GGGAC 7 cut(s) 293, 661, 679, 700, 1529, 1888, 2053
BsmAI GTCTC 5 cut(s) 1386, 1821, 1952, 2003, 2487
BsmFI GGGAC 7 cut(s) 293, 661, 679, 700, 1529, 1888, 2053
BsmI GAATGC 5 cut(s) 1588, 1722, 2020, 2401, 2422
Bso31I GGTCTC 1 cut(s) 2003
Bsp119I TTCGAA 1 cut(s) 743
Bsp1286I GDGCHC 4 cut(s) 511, 1075, 1115, 2628
Bsp1407I TGTACA 2 cut(s) 840, 3040
Bsp1720I GCTNAGC 1 cut(s) 1680
Bsp19I CCATGG 1 cut(s) 2718
BspDI ATCGAT 1 cut(s) 3304
BspFNI CGCG 1 cut(s) 2101
BspHI TCATGA 1 cut(s) 2089
BspLI GGNNCC 4 cut(s) 93, 666, 1074, 3060
BspMAI CTGCAG 3 cut(s) 753, 1266, 2712
BspMI ACCTGC 1 cut(s) 2715
BspPI GGATC 4 cut(s) 677, 998, 1682, 1928
BspQI GCTCTTC 2 cut(s) 309, 1023
BspT104I TTCGAA 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 1072
BspTI CTTAAG 2 cut(s) 1859, 2762
BspTNI GGTCTC 1 cut(s) 2003
BsrDI GCAATG 4 cut(s) 217, 1003, 2064, 2430
BsrGI TGTACA 2 cut(s) 840, 3040
BsrI ACTGG 7 cut(s) 543, 581, 823, 1131, 1386, 1858, 2443
BssECI CCNNGG 6 cut(s) 528, 1775, 1906, 2476, 2477, 2718
BssSI CACGAG 1 cut(s) 277
BssT1I CCWWGG 3 cut(s) 1775, 1906, 2718
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 6 cut(s) 598, 762, 1838, 2478, 3189, 3343
Bst6I CTCTTC 3 cut(s) 309, 1023, 1227
BstAFI CTTAAG 2 cut(s) 1859, 2762
BstAUI TGTACA 2 cut(s) 840, 3040
BstBI TTCGAA 1 cut(s) 743
BstDSI CCRYGG 1 cut(s) 2718
BstEII GGTNACC 1 cut(s) 1556
BstF5I GGATG 9 cut(s) 113, 119, 524, 1360, 1708, 1800, 1921, 2015, 3001
BstFNI CGCG 1 cut(s) 2101
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 4 cut(s) 321, 356, 2784, 3479
BstMAI GTCTC 5 cut(s) 1386, 1821, 1952, 2003, 2487
BstMCI CGRYCG 1 cut(s) 3097
BstMWI GCNNNNNNNGC 7 cut(s) 554, 730, 734, 1039, 2024, 2707, 3322
BstNI CCWGG 6 cut(s) 598, 762, 1838, 2478, 3189, 3343
BstNSI RCATGY 7 cut(s) 382, 1345, 1443, 1877, 1938, 2782, 2892
BstPAI GACNNNNGTC 1 cut(s) 2499
BstPI GGTNACC 1 cut(s) 1556
BstSCI CCNGG 9 cut(s) 527, 596, 760, 1068, 1350, 1836, 2476, 3187, 3341
BstSFI CTRYAG 5 cut(s) 418, 749, 1262, 1521, 2708
BstSLI GKGCMC 1 cut(s) 1075
BstUI CGCG 1 cut(s) 2101
BstV2I GAAGAC 1 cut(s) 2154
BstX2I RGATCY 2 cut(s) 1003, 1643
BstXI CCANNNNNNTGG 2 cut(s) 1393, 3165
BstYI RGATCY 2 cut(s) 1003, 1643
Bsu15I ATCGAT 1 cut(s) 3304
BsuI GTATCC 1 cut(s) 2920
BsuTUI ATCGAT 1 cut(s) 3304
BtgI CCRYGG 1 cut(s) 2718
BtgZI GCGATG 1 cut(s) 160
BtrI CACGTC 1 cut(s) 468
BtsCI GGATG 9 cut(s) 113, 119, 524, 1360, 1708, 1800, 1921, 2015, 3001
BtsI GCAGTG 2 cut(s) 205, 2956
BveI ACCTGC 1 cut(s) 2715
CaiI CAGNNNCTG 3 cut(s) 221, 707, 1007
CciI TCATGA 1 cut(s) 2089
CfoI GCGC 4 cut(s) 321, 356, 2784, 3479
Cfr13I GGNCC 2 cut(s) 144, 2183
ClaI ATCGAT 1 cut(s) 3304
CseI GACGC 3 cut(s) 227, 537, 1110
CsiI ACCWGGT 1 cut(s) 3187
Csp6I GTAC 7 cut(s) 24, 841, 1096, 1426, 1533, 1890, 3041
CviQI GTAC 7 cut(s) 24, 841, 1096, 1426, 1533, 1890, 3041
DriI GACNNNNNGTC 1 cut(s) 2710
EaeI YGGCCR 6 cut(s) 540, 555, 1101, 1299, 2217, 2715
Eam1104I CTCTTC 3 cut(s) 309, 1023, 1227
Eam1105I GACNNNNNGTC 1 cut(s) 2710
EarI CTCTTC 3 cut(s) 309, 1023, 1227
EciI GGCGGA 2 cut(s) 115, 908
Eco130I CCWWGG 3 cut(s) 1775, 1906, 2718
Eco147I AGGCCT 1 cut(s) 1527
Eco24I GRGCYC 2 cut(s) 511, 1115
Eco31I GGTCTC 1 cut(s) 2003
Eco32I GATATC 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 2183
Eco57I CTGAAG 3 cut(s) 333, 1569, 3092
Eco91I GGTNACC 1 cut(s) 1556
EcoO65I GGTNACC 1 cut(s) 1556
EcoRI GAATTC 1 cut(s) 1057
EcoRII CCWGG 6 cut(s) 596, 760, 1836, 2476, 3187, 3341
EcoRV GATATC 1 cut(s) 937
EcoT14I CCWWGG 3 cut(s) 1775, 1906, 2718
EcoT22I ATGCAT 2 cut(s) 2890, 3154
EcoT38I GRGCYC 2 cut(s) 511, 1115
ErhI CCWWGG 3 cut(s) 1775, 1906, 2718
FalI AAGNNNNNCTT 8 cut(s) 1759, 1791, 3273, 3305, 3309, 3341, 3389, 3421
FaqI GGGAC 7 cut(s) 293, 661, 679, 700, 1529, 1888, 2053
FauI CCCGC 1 cut(s) 726
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 1 cut(s) 551
FokI GGATG 9 cut(s) 100, 106, 511, 1367, 1715, 1787, 1928, 2022, 3008
FriOI GRGCYC 2 cut(s) 511, 1115
FspBI CTAG 7 cut(s) 504, 1577, 1608, 1878, 1884, 2853, 2880
GlaI GCGC 4 cut(s) 320, 355, 2783, 3478
GsaI CCCAGC 1 cut(s) 3169
GsuI CTGGAG 2 cut(s) 322, 783
HaeII RGCGCY 1 cut(s) 357
HapII CCGG 3 cut(s) 528, 1069, 1351
HgaI GACGC 3 cut(s) 227, 537, 1110
HhaI GCGC 4 cut(s) 321, 356, 2784, 3479
Hin6I GCGC 4 cut(s) 319, 354, 2782, 3477
HinP1I GCGC 4 cut(s) 319, 354, 2782, 3477
HindIII AAGCTT 5 cut(s) 61, 722, 812, 1768, 3104
HpaII CCGG 3 cut(s) 528, 1069, 1351
HphI GGTGA 6 cut(s) 1066, 1191, 1721, 2153, 3177, 3474
Hpy166II GTNNAC 6 cut(s) 205, 249, 552, 841, 2820, 3230
Hpy188III TCNNGA 7 cut(s) 339, 1748, 1957, 2090, 2127, 2279, 2873
Hpy8I GTNNAC 6 cut(s) 205, 249, 552, 841, 2820, 3230
Hpy99I CGWCG 1 cut(s) 472
HpyAV CCTTC 7 cut(s) 277, 882, 1988, 2108, 2600, 2717, 3314
HpyCH4IV ACGT 4 cut(s) 401, 467, 1209, 2205
HpyF10VI GCNNNNNNNGC 7 cut(s) 554, 730, 734, 1039, 2024, 2707, 3322
HpySE526I ACGT 4 cut(s) 401, 467, 1209, 2205
HspAI GCGC 4 cut(s) 319, 354, 2782, 3477
Ksp22I TGATCA 1 cut(s) 859
LguI GCTCTTC 2 cut(s) 309, 1023
LmnI GCTCC 7 cut(s) 664, 776, 1350, 1363, 1676, 2478, 2934
LweI GCATC 8 cut(s) 490, 1345, 1555, 2393, 2641, 2875, 2986, 3161
MabI ACCWGGT 1 cut(s) 3187
MaeI CTAG 7 cut(s) 504, 1577, 1608, 1878, 1884, 2853, 2880
MaeII ACGT 4 cut(s) 401, 467, 1209, 2205
MfeI CAATTG 1 cut(s) 1295
MflI RGATCY 2 cut(s) 1003, 1643
MhlI GDGCHC 4 cut(s) 511, 1075, 1115, 2628
MlsI TGGCCA 3 cut(s) 542, 1103, 2219
MluNI TGGCCA 3 cut(s) 542, 1103, 2219
MlyI GAGTC 9 cut(s) 478, 840, 911, 1511, 1823, 2090, 2721, 3016, 3238
MmeI TCCRAC 1 cut(s) 3290
Mox20I TGGCCA 3 cut(s) 542, 1103, 2219
Mph1103I ATGCAT 2 cut(s) 2890, 3154
MroXI GAANNNNTTC 2 cut(s) 1615, 2973
MscI TGGCCA 3 cut(s) 542, 1103, 2219
MslI CAYNNNNRTG 3 cut(s) 210, 794, 855
Msp20I TGGCCA 3 cut(s) 542, 1103, 2219
MspCI CTTAAG 2 cut(s) 1859, 2762
MspI CCGG 3 cut(s) 528, 1069, 1351
MspR9I CCNGG 9 cut(s) 529, 598, 762, 1070, 1352, 1838, 2478, 3189, 3343
MunI CAATTG 1 cut(s) 1295
Mva1269I GAATGC 5 cut(s) 1588, 1722, 2020, 2401, 2422
MvaI CCWGG 6 cut(s) 598, 762, 1838, 2478, 3189, 3343
MvnI CGCG 1 cut(s) 2101
MwoI GCNNNNNNNGC 7 cut(s) 554, 730, 734, 1039, 2024, 2707, 3322
NciI CCSGG 3 cut(s) 529, 1070, 1352
NcoI CCATGG 1 cut(s) 2718
NlaIV GGNNCC 4 cut(s) 93, 666, 1074, 3060
NmuCI GTSAC 6 cut(s) 785, 1085, 1122, 1337, 1456, 2443
NsiI ATGCAT 2 cut(s) 2890, 3154
NspI RCATGY 7 cut(s) 382, 1345, 1443, 1877, 1938, 2782, 2892
NspV TTCGAA 1 cut(s) 743
OliI CACNNNNGTG 1 cut(s) 794
PaeI GCATGC 2 cut(s) 382, 1877
PagI TCATGA 1 cut(s) 2089
PasI CCCWGGG 1 cut(s) 2477
PceI AGGCCT 1 cut(s) 1527
PciI ACATGT 1 cut(s) 1439
PciSI GCTCTTC 2 cut(s) 309, 1023
PctI GAATGC 5 cut(s) 1588, 1722, 2020, 2401, 2422
PdmI GAANNNNTTC 2 cut(s) 1615, 2973
PflFI GACNNNGTC 1 cut(s) 1120
PflMI CCANNNNNTGG 2 cut(s) 1843, 1912
PfoI TCCNGGA 5 cut(s) 596, 760, 1350, 1836, 3341
PleI GAGTC 9 cut(s) 478, 839, 910, 1511, 1823, 2090, 2721, 3015, 3238
PpsI GAGTC 9 cut(s) 478, 839, 910, 1511, 1823, 2090, 2721, 3015, 3238
PscI ACATGT 1 cut(s) 1439
PshAI GACNNNNGTC 1 cut(s) 2499
PshBI ATTAAT 1 cut(s) 1794
PsiI TTATAA 1 cut(s) 2337
Psp1406I AACGTT 1 cut(s) 401
Psp6I CCWGG 6 cut(s) 596, 760, 1836, 2476, 3187, 3341
PspEI GGTNACC 1 cut(s) 1556
PspFI CCCAGC 1 cut(s) 3165
PspGI CCWGG 6 cut(s) 596, 760, 1836, 2476, 3187, 3341
PspN4I GGNNCC 4 cut(s) 93, 666, 1074, 3060
PspPI GGNCC 2 cut(s) 144, 2183
PstI CTGCAG 3 cut(s) 753, 1266, 2712
PstNI CAGNNNCTG 3 cut(s) 221, 707, 1007
PsuI RGATCY 2 cut(s) 1003, 1643
PsyI GACNNNGTC 1 cut(s) 1120
RsaI GTAC 7 cut(s) 25, 842, 1097, 1427, 1534, 1891, 3042
RsaNI GTAC 7 cut(s) 24, 841, 1096, 1426, 1533, 1890, 3041
RseI CAYNNNNRTG 3 cut(s) 210, 794, 855
SapI GCTCTTC 2 cut(s) 309, 1023
Sau96I GGNCC 2 cut(s) 144, 2183
ScaI AGTACT 1 cut(s) 1534
SchI GAGTC 9 cut(s) 478, 840, 911, 1511, 1823, 2090, 2721, 3016, 3238
ScrFI CCNGG 9 cut(s) 529, 598, 762, 1070, 1352, 1838, 2478, 3189, 3343
SduI GDGCHC 4 cut(s) 511, 1075, 1115, 2628
SexAI ACCWGGT 1 cut(s) 3187
SfaNI GCATC 8 cut(s) 490, 1345, 1555, 2393, 2641, 2875, 2986, 3161
SfcI CTRYAG 5 cut(s) 418, 749, 1262, 1521, 2708
SfuI TTCGAA 1 cut(s) 743
SinI GGWCC 1 cut(s) 2183
SmiMI CAYNNNNRTG 3 cut(s) 210, 794, 855
SmlI CTYRAG 5 cut(s) 942, 1859, 1965, 2762, 2915
SmoI CTYRAG 5 cut(s) 942, 1859, 1965, 2762, 2915
SpeI ACTAGT 1 cut(s) 2879
SphI GCATGC 2 cut(s) 382, 1877
SseBI AGGCCT 1 cut(s) 1527
SspI AATATT 3 cut(s) 2379, 2487, 2694
SspMI CTAG 7 cut(s) 504, 1577, 1608, 1878, 1884, 2853, 2880
StuI AGGCCT 1 cut(s) 1527
StyD4I CCNGG 9 cut(s) 527, 596, 760, 1068, 1350, 1836, 2476, 3187, 3341
StyI CCWWGG 3 cut(s) 1775, 1906, 2718
TaiI ACGT 4 cut(s) 404, 470, 1212, 2208
TaqI TCGA 8 cut(s) 470, 743, 1115, 1956, 2160, 3279, 3304, 3370
TaqII GACCGA 1 cut(s) 3111
TatI WGTACW 6 cut(s) 23, 840, 1095, 1425, 1532, 3040
TauI GCSGC 3 cut(s) 131, 182, 950
TseFI GTSAC 6 cut(s) 785, 1085, 1122, 1337, 1456, 2443
Tsp45I GTSAC 6 cut(s) 785, 1085, 1122, 1337, 1456, 2443
TspDTI ATGAA 9 cut(s) 47, 408, 867, 1674, 2078, 2160, 2807, 3137, 3377
TspGWI ACGGA 4 cut(s) 947, 2321, 2574, 3215
Tth111I GACNNNGTC 1 cut(s) 1120
Van91I CCANNNNNTGG 2 cut(s) 1843, 1912
Vha464I CTTAAG 2 cut(s) 1859, 2762
VpaK11BI GGWCC 1 cut(s) 2183
VspI ATTAAT 1 cut(s) 1794
XapI RAATTY 6 cut(s) 1057, 2176, 2312, 2531, 2972, 3180
XceI RCATGY 7 cut(s) 382, 1345, 1443, 1877, 1938, 2782, 2892
XcmI CCANNNNNNNNNTGG 1 cut(s) 1913
XmiI GTMKAC 1 cut(s) 551
XmnI GAANNNNTTC 2 cut(s) 1615, 2973
XspI CTAG 7 cut(s) 504, 1577, 1608, 1878, 1884, 2853, 2880
ZrmI AGTACT 1 cut(s) 1534
Zsp2I ATGCAT 2 cut(s) 2890, 3154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.