FvH4_1g06850

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007664
Physical Location & Seq
Reverse (-)
3617141 .. 3621547
4407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06850.t1

Sequence Viewer

Length: 3447 bp
ATGAATGATAACAATAAATTTCCAAACTTTCCAACAATACAACTCTTCTCTATGGAACCTGAGAAAGCCGCCGCTACGTTCTCATCCTCCGCCGCAAGCAACATGAGGGCCAAGAACACAACCACCATTGCCGCCAACAACGACCAAACAATTGCTCACTGCAATGCAGACGCTGGTCTTCTAAACGAGTTTGAACAGTCCACAGTGTCTGGTAAGTCCTTCAACTATACAACATCAACCATTAACGCACCGCAGTCTGTCCCTGAAGAGCGCATAACCGCGTACTTCTCCAGAATCCAAAGAGGCGCTCTTGTTCAGTCTTTTGGCTGCATGCTTGCAGTTGATGAAGCAACCTTCAAGGTCATTTGCTACAGCGAGAATTGCTTTGAGCTTTTGGGTTTAAATGATACTTCTTCCGAGTTGAAAGAAGTAAACACTCTGATTGGAGTCGATGCTAGAGCCCTGTTTATTCCCTCATCTGGGGAATCACTGGCCAGAGCGTCTGCGGCGAGAGAGCTATCATTGTTGAACCCTGTTTGGGTGTATTCCAGGACTACGCAGAAGCCGTTTTATGCTATATTGCATAGGATTGATGTTGGGATTGTGATTGATTTGGAGCCTGCTAAGTCCGGTGATCCTGCATTGTCCCTTGCAGGGGCCGTGCAGTCCCAGAAGCTTGCGGTGCGGGCTATTTCGAAGCTGCAGTCTCTTCCTGGAGGAGATATTGGGGCGTTGTGTGATACTATGGTGGAGAATGTTCAGAAGCTTACTGGATATGATAGAGTTATGGTGTACAAATTTCATGAAGATGAACACGGGGAAGTTGTGTCTGAGATTAGAAGGGAGGATTTGGAGTCCTATTTGGGTTTGCATTATCCTGCCACGGATATCCCTCAAGCGGCAAGGTTCTTGTTCAAGCAAAATCGGGTGCGGATAATTTGTGATTGCAATGCAGAACCTGTTAATCTTGTTCAAAGTGAGGAGCTAAAGCAGCCTCTATTGTTGGTGAATTCAACTCTGCGGTCTCCACATGGCTGCCACAGACAGTACATGGCCAACATGGGCTCAATTGCATCACTGGTTATGGCGGTTACTGTGAATAATACTACTGAATCAACCAAGCTATGGGGGTTGGTGGTGTGCCATCACACTACACCCCGCTACGTTCCTTTCCCTCTTCGCTATGCTTGTGAGTTTCTTATACAAGCATTTGGGCTGCAGCTCAATATGGAGCTTCAGTTGGCAGCACAGTTGGCTGAAAAGAAGAATCTCAAGACACAGACTTTACTTTGTGACATGCTCCTCCGGGATGCCCCATCTGGTATTGTAACTCAATCTCCTAGTATAATGGATATTGTGAAATGTGATGGGGCTGCGTTGTACTATAGCGGAACATGTTGGTTGATGGGTGTCACACCAACTGAAGCACAGGTTAAAAGTATAGTTGAGTGGCTGCTAAAGAATCATGGGGACTCTACAGGACTGAGTACTGACAGTTTGGCTGAAGCTGGTTATCCTGCTGCAGCTGCACTAGGGAATGCGGTATGTGGTCTGGCTACTGCCAGAATCAGTTCAAATGATTTTCTGTTTTGGTTCAGATCTCACACTGCCAAGGAAGTCTTGTGGGGAGGAGCTAAGCATGATCCGGATGAAAAGGATGATGGTGAAAGAATGCACCCAAGATCATCATTCAAGGCTTTTCTTGAAGTAGCGAAAAGTAGAAGCTTGCCTTGGGACGTCTCTGAGATTAATGCCATCCACTCTTTACAGCTCATAATGAGAGACTCATTCCAGGATATGGAAGAAACTGGCCTTAAGGCAATAAATCATGCTCGTCCTAGTGGTTCTACTATGAAGCAGTCGCAAGGGATGGATGAGCTCAAATCTGTGGCATGTGAGATGGTTAAATTGATCGAGACAGCTCAAGTTCCAATTTTCGGGGTTGATTCAGAAGGTATCATCAATGGATGGAATGCAAAGATGGCTGAATTGACAGGATTGCAAGATAGTGAAGCAATGGGGAAGTCCCTTGTTAATGATATTGTTCATGAGGACTCGCATGGCACTGTTGAAGGTATCTTATCCAGAGCGTTACAAGGTGATGAGGACAAGAATATCCAGTTGAAACTGAGAAATTTTGGACCTCAGCAGAACTCACAGACATATATTGTGGCCAACAGCTGCACAAGTAGGAATCGTGCAAACAATGTTGTTGGTGTATGCTTTGTGGGTCAAGACATTACTTGTGAAAAACTTGTTACGGATAAATTCATCCGCTTGCAAGGGGATTATAAGGCTATCATACAGAGCCTTAACCCATTGATTCCACCAATATTTGCATCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCAATGGAGAAGTTGACAGGTGTGACAAGAGATGAGGCTATTGGTAAAGTGCTCCCTGGGGAAATATTTGGAGACTACTGTCGGTTGAAAGGCGAAGATTCAATGACTAAATTTATGATTGCATTATATCAAGGAATCAGTGGGCAAGAAATTGAGAAGTTTCCGTTTGGTTTTTTTGATAGAGAAGGAAAGTATGTTGAAGTGCTCTTAACTGCAAGCAAGAGGACTGATGCCGATGAGAATATAATAGGTTGCTTCTGCTTCTTGCAAATATCTCAGCCTGACCTGCAGTCGGCCATGGAAGGACTACTCAGACAAGAGGATGATAATTGCCCTTCAAAAATTAAGGAATTGATTTACATGCGCCAAGAGATGAAAAATCCTTTAAATGGTATCAGGTTTACTCACAAACTCCTTGAAAATACAATTATTTCAAGTTATCAGAAGCAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATCCTTGAGAATATGGATACGAGGAGCATAGAGCAAGGCAGTGTGGTGCTGAACATGGAAGAATTTCTCTTAGGAAGTCTTTTGGATGTCATTGTGAGTCAAGCAATGATCTCACTGAGGCAAAGAAATGTACAGCTTTTTCATGAGATTCCAAACGAAATTAAATCTCTATATTTGCATGGTGACCAAATCAAGCTTCAGTTAGTTCTATCAGATTTCTTGCTTAATGTGGTGCATCATGCATCTCCAGATAGCTGGGTTGAAATCAGAATTTCACCAGGTCTAAAGCTAATAAAGGATGGCAACAGCTATATCCGTTTACAGTTCAGAATGACTCTCCCTGGTCAAGGGCTTCCCACTGCACTAATCGAAGATACGTTTGATGATGGAATTCGATGGACTACGCAAGAAGGGCTTGGGCTGAACATGTCCAGGAAACTTCTCTGTAGAATGAATGGTCGAGTGCAGTATGTTAGAGAGCATGATAAGTGTTACTTCCTCATTGACATTGAACTTAGAACAAGGAAAGAAAGGCAGATGTTGTTGCTGACACAAGCAGATAAGAGCGCATCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1149

Amino Acids

127.7

Weight (kDa)

5.39

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 95 - 208 2.8e-32 PAS fold
GAF PF01590 241 - 412 2.7e-17 GAF domain
PHY PF00360 425 - 600 8.6e-56 Phytochrome region
PAS PF00989 633 - 747 1.4e-24 PAS fold
PAS_4 PF08448 640 - 748 1.1e-07 PAS fold
PAS PF00989 763 - 882 3e-18 PAS fold
HisKA PF00512 912 - 968 9.5e-08 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1017 - 1117 1.8e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2292
AatII GACGTC 1 cut(s) 1740
Acc36I ACCTGC 1 cut(s) 2670
AccB7I CCANNNNNTGG 2 cut(s) 1125, 1798
AccII CGCG 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 1645
AclWI GGATC 2 cut(s) 629, 1637
AcoI YGGCCR 4 cut(s) 492, 1053, 2172, 2670
AcsI RAATTY 9 cut(s) 17, 797, 1009, 2134, 2267, 2486, 2930, 3138, 3258
AcuI CTGAAG 5 cut(s) 285, 1220, 1443, 1524, 3050
AcyI GRCGYC 1 cut(s) 1737
AfaI GTAC 6 cut(s) 284, 794, 1049, 1382, 1489, 3000
AflII CTTAAG 1 cut(s) 1814
AflIII ACRYGT 2 cut(s) 1394, 3294
AhdI GACNNNNNGTC 1 cut(s) 2665
AhlI ACTAGT 1 cut(s) 2837
AjnI CCWGG 7 cut(s) 548, 712, 1791, 2431, 3145, 3208, 3299
AjuI GAANNNNNNNTTGG 4 cut(s) 1714, 1746, 3048, 3080
Alw21I GWGCWC 3 cut(s) 1881, 2430, 2583
Alw26I GTCTC 6 cut(s) 711, 1029, 1744, 1776, 1910, 2442
AlwI GGATC 2 cut(s) 629, 1637
AlwNI CAGNNNCTG 3 cut(s) 173, 209, 959
Aor13HI TCCGGA 1 cut(s) 1645
AoxI GGCC 7 cut(s) 108, 492, 657, 1053, 1810, 2172, 2670
ApoI RAATTY 9 cut(s) 17, 797, 1009, 2134, 2267, 2486, 2930, 3138, 3258
ArsI GACNNNNNNTTYG 2 cut(s) 689, 721
AseI ATTAAT 1 cut(s) 1749
Asp700I GAANNNNTTC 2 cut(s) 1570, 2931
AspLEI GCGC 4 cut(s) 273, 308, 2742, 3437
AspS9I GGNCC 3 cut(s) 108, 657, 2141
AsuC2I CCSGG 1 cut(s) 1307
AsuHPI GGTGA 7 cut(s) 644, 1018, 1676, 2111, 3062, 3135, 3432
AsuII TTCGAA 1 cut(s) 695
AvaII GGWCC 1 cut(s) 2141
BaeI ACNNNNGTAYC 2 cut(s) 732, 765
BalI TGGCCA 3 cut(s) 494, 1055, 2174
BanII GRGCYC 3 cut(s) 463, 1067, 1881
BbsI GAAGAC 1 cut(s) 170
Bbv12I GWGCWC 3 cut(s) 1881, 2430, 2583
BbvCI CCTCAGC 1 cut(s) 2145
BceAI ACGGC 2 cut(s) 550, 644
BciT130I CCWGG 7 cut(s) 550, 714, 1793, 2433, 3147, 3210, 3301
BciVI GTATCC 1 cut(s) 2878
BcnI CCSGG 1 cut(s) 1307
BcoDI GTCTC 6 cut(s) 711, 1029, 1744, 1776, 1910, 2442
BcuI ACTAGT 1 cut(s) 2837
BfaI CTAG 5 cut(s) 456, 1341, 1532, 1839, 2838
BfmI CTRYAG 8 cut(s) 370, 701, 1217, 1384, 1476, 1521, 2663, 3313
BfoI RGCGCY 1 cut(s) 309
BfrI CTTAAG 1 cut(s) 1814
BfuAI ACCTGC 1 cut(s) 2670
BfuI GTATCC 1 cut(s) 2878
BglII AGATCT 1 cut(s) 1598
BlpI GCTNAGC 1 cut(s) 1635
BmcAI AGTACT 1 cut(s) 1489
Bme1390I CCNGG 8 cut(s) 550, 714, 1307, 1793, 2433, 3147, 3210, 3301
Bme18I GGWCC 1 cut(s) 2141
BmeRI GACNNNNNGTC 1 cut(s) 2665
BmgT120I GGNCC 3 cut(s) 108, 657, 2141
BmiI GGNNCC 3 cut(s) 57, 618, 658
BmrFI CCNGG 8 cut(s) 550, 714, 1307, 1793, 2433, 3147, 3210, 3301
BmsI GCATC 8 cut(s) 442, 1082, 1300, 2348, 2596, 2833, 3112, 3119
BoxI GACNNNNGTC 2 cut(s) 174, 2454
BpiI GAAGAC 1 cut(s) 170
BpmI CTGGAG 3 cut(s) 274, 735, 3099
Bpu10I CCTNAGC 1 cut(s) 2145
Bpu1102I GCTNAGC 1 cut(s) 1635
Bpu14I TTCGAA 1 cut(s) 695
BpuEI CTTGAG 4 cut(s) 879, 1256, 1908, 2894
BpuMI CCSGG 1 cut(s) 1307
BsaHI GRCGYC 1 cut(s) 1737
BsaI GGTCTC 1 cut(s) 1029
BsaJI CCNNGG 7 cut(s) 882, 1611, 1730, 2431, 2432, 2673, 3208
BsaWI WCCGGW 2 cut(s) 629, 1645
BsaXI ACNNNNNCTCC 4 cut(s) 1223, 1253, 1321, 1351
Bse1I ACTGG 5 cut(s) 495, 775, 1083, 1813, 2119
Bse3DI GCAATG 6 cut(s) 126, 169, 955, 2022, 2385, 2979
BseAI TCCGGA 1 cut(s) 1645
BseBI CCWGG 7 cut(s) 550, 714, 1793, 2433, 3147, 3210, 3301
BseDI CCNNGG 7 cut(s) 882, 1611, 1730, 2431, 2432, 2673, 3208
BseMI GCAATG 6 cut(s) 126, 169, 955, 2022, 2385, 2979
BseMII CTCAG 9 cut(s) 51, 822, 1475, 1734, 2120, 2159, 2666, 2701, 2975
BseNI ACTGG 5 cut(s) 495, 775, 1083, 1813, 2119
BseRI GAGGAG 5 cut(s) 732, 995, 1292, 1644, 2905
BseYI CCCAGC 1 cut(s) 3123
BsgI GTGCAG 5 cut(s) 683, 1512, 2167, 3213, 3353
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 7 cut(s) 110, 494, 659, 1055, 1812, 2174, 2672
BsiHKAI GWGCWC 3 cut(s) 1881, 2430, 2583
BsiSI CCGG 3 cut(s) 630, 1306, 1646
BslFI GGGAC 6 cut(s) 245, 631, 652, 1484, 1748, 2011
BsmAI GTCTC 6 cut(s) 711, 1029, 1744, 1776, 1910, 2442
BsmBI CGTCTC 1 cut(s) 1744
BsmFI GGGAC 6 cut(s) 245, 631, 652, 1484, 1748, 2011
BsmI GAATGC 5 cut(s) 1543, 1677, 1978, 2356, 2377
BsnI GGCC 7 cut(s) 110, 494, 659, 1055, 1812, 2174, 2672
Bso31I GGTCTC 1 cut(s) 1029
Bsp119I TTCGAA 1 cut(s) 695
Bsp1286I GDGCHC 5 cut(s) 463, 1067, 1881, 2430, 2583
Bsp13I TCCGGA 1 cut(s) 1645
Bsp1407I TGTACA 2 cut(s) 792, 2998
Bsp143I GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
Bsp1720I GCTNAGC 1 cut(s) 1635
Bsp19I CCATGG 1 cut(s) 2673
BspANI GGCC 7 cut(s) 110, 494, 659, 1055, 1812, 2174, 2672
BspCNI CTCAG 9 cut(s) 52, 823, 1476, 1735, 2121, 2158, 2665, 2700, 2976
BspEI TCCGGA 1 cut(s) 1645
BspFNI CGCG 1 cut(s) 281
BspHI TCATGA 3 cut(s) 802, 2047, 3010
BspLI GGNNCC 3 cut(s) 57, 618, 658
BspMAI CTGCAG 4 cut(s) 705, 1221, 1525, 2667
BspMI ACCTGC 1 cut(s) 2670
BspPI GGATC 2 cut(s) 629, 1637
BspQI GCTCTTC 1 cut(s) 261
BspT104I TTCGAA 1 cut(s) 695
BspTI CTTAAG 1 cut(s) 1814
BspTNI GGTCTC 1 cut(s) 1029
BsrDI GCAATG 6 cut(s) 126, 169, 955, 2022, 2385, 2979
BsrGI TGTACA 2 cut(s) 792, 2998
BsrI ACTGG 5 cut(s) 495, 775, 1083, 1813, 2119
BssECI CCNNGG 7 cut(s) 882, 1611, 1730, 2431, 2432, 2673, 3208
BssMI GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
BssNI GRCGYC 1 cut(s) 1737
BssT1I CCWWGG 3 cut(s) 1611, 1730, 2673
Bst2UI CCWGG 7 cut(s) 550, 714, 1793, 2433, 3147, 3210, 3301
Bst4CI ACNGT 9 cut(s) 198, 205, 1047, 1096, 1251, 1496, 2068, 2456, 3192
Bst6I CTCTTC 4 cut(s) 50, 261, 714, 1182
BstACI GRCGYC 1 cut(s) 1737
BstAFI CTTAAG 1 cut(s) 1814
BstAUI TGTACA 2 cut(s) 792, 2998
BstBI TTCGAA 1 cut(s) 695
BstDSI CCRYGG 2 cut(s) 882, 2673
BstEII GGTNACC 1 cut(s) 3050
BstENI CCTNNNNNAGG 1 cut(s) 3213
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 4 cut(s) 273, 308, 2742, 3437
BstKTI GATC 6 cut(s) 637, 1601, 1645, 1685, 1914, 2979
BstMAI GTCTC 6 cut(s) 711, 1029, 1744, 1776, 1910, 2442
BstMBI GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
BstNI CCWGG 7 cut(s) 550, 714, 1793, 2433, 3147, 3210, 3301
BstNSI RCATGY 7 cut(s) 334, 1300, 1398, 1896, 2740, 2850, 3298
BstPAI GACNNNNGTC 2 cut(s) 174, 2454
BstPI GGTNACC 1 cut(s) 3050
BstSCI CCNGG 8 cut(s) 548, 712, 1305, 1791, 2431, 3145, 3208, 3299
BstSFI CTRYAG 8 cut(s) 370, 701, 1217, 1384, 1476, 1521, 2663, 3313
BstUI CGCG 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 1598
BstXI CCANNNNNNTGG 1 cut(s) 3123
BstYI RGATCY 1 cut(s) 1598
BsuI GTATCC 1 cut(s) 2878
BsuRI GGCC 7 cut(s) 110, 494, 659, 1055, 1812, 2174, 2672
BtgI CCRYGG 2 cut(s) 882, 2673
BtsI GCAGTG 4 cut(s) 157, 1605, 2914, 3225
BveI ACCTGC 1 cut(s) 2670
CaiI CAGNNNCTG 3 cut(s) 173, 209, 959
CciI TCATGA 3 cut(s) 802, 2047, 3010
CfoI GCGC 4 cut(s) 273, 308, 2742, 3437
Cfr13I GGNCC 3 cut(s) 108, 657, 2141
CseI GACGC 2 cut(s) 179, 489
CsiI ACCWGGT 1 cut(s) 3145
Csp6I GTAC 6 cut(s) 283, 793, 1048, 1381, 1488, 2999
CviQI GTAC 6 cut(s) 283, 793, 1048, 1381, 1488, 2999
DpnI GATC 6 cut(s) 636, 1600, 1644, 1684, 1913, 2978
DpnII GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
DraI TTTAAA 2 cut(s) 402, 2763
DriI GACNNNNNGTC 1 cut(s) 2665
EaeI YGGCCR 4 cut(s) 492, 1053, 2172, 2670
Eam1104I CTCTTC 4 cut(s) 50, 261, 714, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 2665
EarI CTCTTC 4 cut(s) 50, 261, 714, 1182
EciI GGCGGA 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 1879
Eco130I CCWWGG 3 cut(s) 1611, 1730, 2673
Eco24I GRGCYC 3 cut(s) 463, 1067, 1881
Eco31I GGTCTC 1 cut(s) 1029
Eco32I GATATC 1 cut(s) 889
Eco47I GGWCC 1 cut(s) 2141
Eco53kI GAGCTC 1 cut(s) 1879
Eco57I CTGAAG 5 cut(s) 285, 1220, 1443, 1524, 3050
Eco91I GGTNACC 1 cut(s) 3050
EcoICRI GAGCTC 1 cut(s) 1879
EcoNI CCTNNNNNAGG 1 cut(s) 3213
EcoO65I GGTNACC 1 cut(s) 3050
EcoRI GAATTC 2 cut(s) 1009, 3258
EcoRII CCWGG 7 cut(s) 548, 712, 1791, 2431, 3145, 3208, 3299
EcoRV GATATC 1 cut(s) 889
EcoT14I CCWWGG 3 cut(s) 1611, 1730, 2673
EcoT22I ATGCAT 2 cut(s) 2848, 3112
EcoT38I GRGCYC 3 cut(s) 463, 1067, 1881
ErhI CCWWGG 3 cut(s) 1611, 1730, 2673
Esp3I CGTCTC 1 cut(s) 1744
FalI AAGNNNNNCTT 8 cut(s) 1604, 1636, 1714, 1746, 3267, 3299, 3347, 3379
FaqI GGGAC 6 cut(s) 245, 631, 652, 1484, 1748, 2011
FauI CCCGC 2 cut(s) 678, 1166
FriOI GRGCYC 3 cut(s) 463, 1067, 1881
FspBI CTAG 5 cut(s) 456, 1341, 1532, 1839, 2838
GlaI GCGC 4 cut(s) 272, 307, 2741, 3436
GsaI CCCAGC 1 cut(s) 3127
GsuI CTGGAG 3 cut(s) 274, 735, 3099
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 7 cut(s) 110, 494, 659, 1055, 1812, 2174, 2672
HapII CCGG 3 cut(s) 630, 1306, 1646
HgaI GACGC 2 cut(s) 179, 489
HhaI GCGC 4 cut(s) 273, 308, 2742, 3437
Hin1I GRCGYC 1 cut(s) 1737
Hin6I GCGC 4 cut(s) 271, 306, 2740, 3435
HinP1I GCGC 4 cut(s) 271, 306, 2740, 3435
HincII GTYRAC 1 cut(s) 2391
HindII GTYRAC 1 cut(s) 2391
HindIII AAGCTT 4 cut(s) 674, 764, 1723, 3062
HpaII CCGG 3 cut(s) 630, 1306, 1646
HphI GGTGA 7 cut(s) 644, 1018, 1676, 2111, 3062, 3135, 3432
Hpy166II GTNNAC 6 cut(s) 201, 433, 793, 2391, 2778, 3188
Hpy8I GTNNAC 6 cut(s) 201, 433, 793, 2391, 2778, 3188
HpyAV CCTTC 9 cut(s) 229, 364, 834, 1946, 2066, 2555, 2672, 2721, 3272
HpyCH4III ACNGT 9 cut(s) 198, 205, 1047, 1096, 1251, 1496, 2068, 2456, 3192
HpyCH4IV ACGT 4 cut(s) 77, 1164, 1737, 3245
HpySE526I ACGT 4 cut(s) 77, 1164, 1737, 3245
Hsp92I GRCGYC 1 cut(s) 1737
HspAI GCGC 4 cut(s) 271, 306, 2740, 3435
Kpn2I TCCGGA 1 cut(s) 1645
Kzo9I GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 7 cut(s) 616, 982, 1231, 1305, 1631, 2433, 2892
LweI GCATC 8 cut(s) 442, 1082, 1300, 2348, 2596, 2833, 3112, 3119
MabI ACCWGGT 1 cut(s) 3145
MaeI CTAG 5 cut(s) 456, 1341, 1532, 1839, 2838
MaeII ACGT 4 cut(s) 77, 1164, 1737, 3245
MaeIII GTNAC 9 cut(s) 1090, 1292, 1327, 1411, 2091, 2257, 2398, 3050, 3359
MalI GATC 6 cut(s) 636, 1600, 1644, 1684, 1913, 2978
MboI GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
MfeI CAATTG 2 cut(s) 150, 1068
MflI RGATCY 1 cut(s) 1598
MhlI GDGCHC 5 cut(s) 463, 1067, 1881, 2430, 2583
MlsI TGGCCA 3 cut(s) 494, 1055, 2174
MluNI TGGCCA 3 cut(s) 494, 1055, 2174
MlyI GAGTC 7 cut(s) 456, 863, 1466, 1778, 2048, 2974, 3196
MmeI TCCRAC 1 cut(s) 56
Mox20I TGGCCA 3 cut(s) 494, 1055, 2174
Mph1103I ATGCAT 2 cut(s) 2848, 3112
MroI TCCGGA 1 cut(s) 1645
MroXI GAANNNNTTC 2 cut(s) 1570, 2931
MscI TGGCCA 3 cut(s) 494, 1055, 2174
MslI CAYNNNNRTG 2 cut(s) 162, 807
Msp20I TGGCCA 3 cut(s) 494, 1055, 2174
MspA1I CMGCKG 2 cut(s) 1526, 2181
MspCI CTTAAG 1 cut(s) 1814
MspI CCGG 3 cut(s) 630, 1306, 1646
MspR9I CCNGG 8 cut(s) 550, 714, 1307, 1793, 2433, 3147, 3210, 3301
MunI CAATTG 2 cut(s) 150, 1068
Mva1269I GAATGC 5 cut(s) 1543, 1677, 1978, 2356, 2377
MvaI CCWGG 7 cut(s) 550, 714, 1793, 2433, 3147, 3210, 3301
MvnI CGCG 1 cut(s) 281
NciI CCSGG 1 cut(s) 1307
NcoI CCATGG 1 cut(s) 2673
NdeII GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
NlaIV GGNNCC 3 cut(s) 57, 618, 658
NmuCI GTSAC 4 cut(s) 1292, 1411, 2398, 3050
NsiI ATGCAT 2 cut(s) 2848, 3112
NspI RCATGY 7 cut(s) 334, 1300, 1398, 1896, 2740, 2850, 3298
NspV TTCGAA 1 cut(s) 695
PaeI GCATGC 1 cut(s) 334
PagI TCATGA 3 cut(s) 802, 2047, 3010
PasI CCCWGGG 1 cut(s) 2432
PciI ACATGT 2 cut(s) 1394, 3294
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PctI GAATGC 5 cut(s) 1543, 1677, 1978, 2356, 2377
PdmI GAANNNNTTC 2 cut(s) 1570, 2931
PflMI CCANNNNNTGG 2 cut(s) 1125, 1798
PfoI TCCNGGA 5 cut(s) 548, 712, 1305, 1791, 3299
PleI GAGTC 7 cut(s) 455, 862, 1466, 1778, 2048, 2973, 3196
PpsI GAGTC 7 cut(s) 455, 862, 1466, 1778, 2048, 2973, 3196
PscI ACATGT 2 cut(s) 1394, 3294
PshAI GACNNNNGTC 2 cut(s) 174, 2454
PshBI ATTAAT 1 cut(s) 1749
PsiI TTATAA 1 cut(s) 2292
Psp124BI GAGCTC 1 cut(s) 1881
Psp6I CCWGG 7 cut(s) 548, 712, 1791, 2431, 3145, 3208, 3299
PspEI GGTNACC 1 cut(s) 3050
PspFI CCCAGC 1 cut(s) 3123
PspGI CCWGG 7 cut(s) 548, 712, 1791, 2431, 3145, 3208, 3299
PspN4I GGNNCC 3 cut(s) 57, 618, 658
PspPI GGNCC 3 cut(s) 108, 657, 2141
PstI CTGCAG 4 cut(s) 705, 1221, 1525, 2667
PstNI CAGNNNCTG 3 cut(s) 173, 209, 959
PsuI RGATCY 1 cut(s) 1598
PvuII CAGCTG 2 cut(s) 1526, 2181
RsaI GTAC 6 cut(s) 284, 794, 1049, 1382, 1489, 3000
RsaNI GTAC 6 cut(s) 283, 793, 1048, 1381, 1488, 2999
RseI CAYNNNNRTG 2 cut(s) 162, 807
SacI GAGCTC 1 cut(s) 1881
SapI GCTCTTC 1 cut(s) 261
Sau3AI GATC 6 cut(s) 634, 1598, 1642, 1682, 1911, 2976
Sau96I GGNCC 3 cut(s) 108, 657, 2141
ScaI AGTACT 1 cut(s) 1489
SchI GAGTC 7 cut(s) 456, 863, 1466, 1778, 2048, 2974, 3196
ScrFI CCNGG 8 cut(s) 550, 714, 1307, 1793, 2433, 3147, 3210, 3301
SduI GDGCHC 5 cut(s) 463, 1067, 1881, 2430, 2583
SexAI ACCWGGT 1 cut(s) 3145
SfaNI GCATC 8 cut(s) 442, 1082, 1300, 2348, 2596, 2833, 3112, 3119
SfcI CTRYAG 8 cut(s) 370, 701, 1217, 1384, 1476, 1521, 2663, 3313
SfuI TTCGAA 1 cut(s) 695
SinI GGWCC 1 cut(s) 2141
SmiMI CAYNNNNRTG 2 cut(s) 162, 807
SmlI CTYRAG 5 cut(s) 894, 1271, 1814, 1923, 2873
SmoI CTYRAG 5 cut(s) 894, 1271, 1814, 1923, 2873
SpeI ACTAGT 1 cut(s) 2837
SphI GCATGC 1 cut(s) 334
SspI AATATT 2 cut(s) 2334, 2442
SspMI CTAG 5 cut(s) 456, 1341, 1532, 1839, 2838
SstI GAGCTC 1 cut(s) 1881
StyD4I CCNGG 8 cut(s) 548, 712, 1305, 1791, 2431, 3145, 3208, 3299
StyI CCWWGG 3 cut(s) 1611, 1730, 2673
TaaI ACNGT 9 cut(s) 198, 205, 1047, 1096, 1251, 1496, 2068, 2456, 3192
TaiI ACGT 4 cut(s) 80, 1167, 1740, 3248
TaqI TCGA 6 cut(s) 450, 695, 1914, 3237, 3262, 3328
TatI WGTACW 5 cut(s) 792, 1047, 1380, 1487, 2998
TauI GCSGC 6 cut(s) 71, 74, 95, 134, 509, 902
TseFI GTSAC 4 cut(s) 1292, 1411, 2398, 3050
Tsp45I GTSAC 4 cut(s) 1292, 1411, 2398, 3050
TspGWI ACGGA 4 cut(s) 899, 2276, 2529, 3173
Van91I CCANNNNNTGG 2 cut(s) 1125, 1798
Vha464I CTTAAG 1 cut(s) 1814
VpaK11BI GGWCC 1 cut(s) 2141
VspI ATTAAT 1 cut(s) 1749
XagI CCTNNNNNAGG 1 cut(s) 3213
XapI RAATTY 9 cut(s) 17, 797, 1009, 2134, 2267, 2486, 2930, 3138, 3258
XceI RCATGY 7 cut(s) 334, 1300, 1398, 1896, 2740, 2850, 3298
XmnI GAANNNNTTC 2 cut(s) 1570, 2931
XspI CTAG 5 cut(s) 456, 1341, 1532, 1839, 2838
ZraI GACGTC 1 cut(s) 1738
ZrmI AGTACT 1 cut(s) 1489
Zsp2I ATGCAT 2 cut(s) 2848, 3112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.