AT4G20190

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007028
Physical Location & Seq
Reverse (-)
10906366 .. 10907722
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20190.1

Sequence Viewer

Length: 1170 bp
ATGGCGACAGATGTTCTCAGCTTCAGGGACGATAGTAGTCTCGAGGACTGGCATGACTTTGAGGTTCTAGGTGGTGGAGACGAGCCCAAGATTCTTATCAAGAAGACGAGTATGCAATCCGTATCCGAGAGGCGGATCTCGGTTGATCCGCAATCGCTATTGTCCAGGAATGGGAGCTTCGATATGATAGTCTCACGTCCGAGAGACATCGATGACTTGCCGTTGGATCATCAAATGAAGACGAAGTTTGTGAGCTGCAGCCTCCCAAACTCAGCAGCTACGTCACCTAGAAATAGCTCTATTCACAACTGGAAGGACAGAACAACTGAGCAAGTTCTTGACCTAATGCTCGTTCAAGATGCAGCCACTGCGTTTCGAAGAAGCAAATCTTGCGGCGAAGGACGTGCTTGCACACCATCGCTCGATTTCGACATGCTATTGCATAAATCAAGAAATGCACATCATAATCAAAATCATCATCGTGGCTTCTCTTCCTCTAACTCTAAGAGTCTCTCTCACAAGAGTAGTGGAAACAACTCTTTCTTCTCCAAAACAGAGTCTAACAAAAGCAACAGAAGCAATAGCAATACCGCGAATTCGAAAAGCATCAATTCATTCGAAGACGGATTCAAATGCAGCGCTTTGTGTCTATACCTACCCGGTTTCAGCAAAGGAAAGCCCGTAAGATCATCTCGAAAAGGTGATTCTTCGTTCACCAGAACAACCACGATGACTTCCTCTCAATCGATGGCAAGAACCGCTTCCATTAGAGACACTGCCGTGCTCTCGGCTCGAGCCTCCCTAGAGCGGTTCGAGTGCGGTTCTTGGACATCTTCGGCTATGATTTACGATGACAATGCCGATCTTGGTGGCCATTTCTTCGACTTGCCTTCCGAATTGATCAAAGGTGGGCCGGGAGGGAACGATCAAGACGATCCTGTTTCAGCTGCTTTCGTGTTCGACAAGGAACCTAATTTGGACAAAGAGATCAAAGGTGTTTTGAAAACGTCTGGTTCGAAATCAAGAAGATCAATGGAGTCACCACGTCACGTTCGGTTCTCAACCTCGTCGCCGGTTTCTTATCCAACGTCTCCGACACATTCAATCACGCCACGGTTGCTACAAGCCACCGAGGATTTCAGTAGTTTCTTGGAAGCTCAAGCCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.79

Weight (kDa)

8.46

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 808
AccII CGCG 1 cut(s) 593
AciI CCGC 7 cut(s) 133, 149, 393, 591, 759, 808, 819
AclWI GGATC 4 cut(s) 140, 143, 234, 929
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 1 cut(s) 7
AfeI AGCGCT 1 cut(s) 640
AfiI CCNNNNNNNGG 3 cut(s) 132, 171, 807
AgsI TTSAA 4 cut(s) 356, 631, 1003, 1104
AjiI CACGTC 3 cut(s) 197, 404, 1046
AjnI CCWGG 1 cut(s) 164
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 7 cut(s) 21, 177, 255, 278, 297, 947, 1157
AluI AGCT 7 cut(s) 21, 177, 255, 278, 297, 947, 1157
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 7 cut(s) 44, 72, 196, 198, 515, 765, 1095
AlwI GGATC 4 cut(s) 140, 143, 234, 929
AlwNI CAGNNNCTG 1 cut(s) 368
Ama87I CYCGRG 2 cut(s) 41, 792
Aor51HI AGCGCT 1 cut(s) 640
AoxI GGCC 2 cut(s) 871, 911
ApeKI GCWGC 6 cut(s) 255, 258, 275, 362, 636, 947
ApoI RAATTY 1 cut(s) 595
Asp700I GAANNNNTTC 1 cut(s) 760
AspLEI GCGC 1 cut(s) 641
AspS9I GGNCC 1 cut(s) 911
AsuC2I CCSGG 2 cut(s) 660, 915
AsuHPI GGTGA 4 cut(s) 276, 706, 713, 1032
AsuII TTCGAA 4 cut(s) 376, 599, 618, 1016
AvaI CYCGRG 2 cut(s) 41, 792
BalI TGGCCA 1 cut(s) 873
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 3 cut(s) 110, 245, 627
Bbv12I GWGCWC 1 cut(s) 786
BbvI GCAGC 6 cut(s) 242, 270, 287, 374, 648, 934
BccI CCATC 2 cut(s) 424, 742
BceAI ACGGC 3 cut(s) 205, 764, 1148
BcgI CGANNNNNNTGC 4 cut(s) 386, 420, 839, 873
BciT130I CCWGG 1 cut(s) 166
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 900
BcnI CCSGG 2 cut(s) 660, 915
BcoDI GTCTC 7 cut(s) 44, 72, 196, 198, 515, 765, 1095
BfaI CTAG 3 cut(s) 68, 288, 803
BfmI CTRYAG 1 cut(s) 256
BfoI RGCGCY 1 cut(s) 642
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 7 cut(s) 256, 259, 276, 363, 394, 637, 948
BlsI GCNGC 7 cut(s) 257, 260, 277, 364, 395, 638, 949
Bme1390I CCNGG 3 cut(s) 166, 660, 915
BmeT110I CYCGRG 2 cut(s) 41, 792
BmgBI CACGTC 3 cut(s) 197, 404, 1046
BmgT120I GGNCC 1 cut(s) 911
BmiI GGNNCC 1 cut(s) 969
BmrFI CCNGG 3 cut(s) 166, 660, 915
BmsI GCATC 2 cut(s) 349, 615
BpiI GAAGAC 3 cut(s) 110, 245, 627
BplI GAGNNNNNCTC 2 cut(s) 499, 531
Bpu14I TTCGAA 4 cut(s) 376, 599, 618, 1016
BpuEI CTTGAG 1 cut(s) 1143
BpuMI CCSGG 2 cut(s) 660, 915
Bsa29I ATCGAT 2 cut(s) 210, 746
BsaBI GATNNNNATC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 1112, 1131
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 171, 807
Bse118I RCCGGY 1 cut(s) 1072
Bse1I ACTGG 2 cut(s) 53, 314
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 166
BseCI ATCGAT 2 cut(s) 210, 746
BseDI CCNNGG 2 cut(s) 1112, 1131
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 132, 171, 807
BseMII CTCAG 3 cut(s) 31, 285, 318
BseNI ACTGG 2 cut(s) 53, 314
BseXI GCAGC 6 cut(s) 242, 270, 287, 374, 648, 934
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 2 cut(s) 873, 913
BshVI ATCGAT 2 cut(s) 210, 746
BsiHKAI GWGCWC 1 cut(s) 786
BsiHKCI CYCGRG 2 cut(s) 41, 792
BsiSI CCGG 3 cut(s) 660, 914, 1073
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 132, 171, 807
BsmAI GTCTC 7 cut(s) 44, 72, 196, 198, 515, 765, 1095
BsmBI CGTCTC 2 cut(s) 72, 1095
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 873, 913
BsoBI CYCGRG 2 cut(s) 41, 792
Bsp119I TTCGAA 4 cut(s) 376, 599, 618, 1016
Bsp1286I GDGCHC 2 cut(s) 87, 786
BspACI CCGC 7 cut(s) 133, 149, 393, 591, 759, 808, 819
BspANI GGCC 2 cut(s) 873, 913
BspCNI CTCAG 3 cut(s) 30, 284, 319
BspDI ATCGAT 2 cut(s) 210, 746
BspFNI CGCG 1 cut(s) 593
BspLI GGNNCC 1 cut(s) 969
BspMAI CTGCAG 1 cut(s) 260
BspPI GGATC 4 cut(s) 140, 143, 234, 929
BspT104I TTCGAA 4 cut(s) 376, 599, 618, 1016
BsrBI CCGCTC 1 cut(s) 808
BsrFI RCCGGY 1 cut(s) 1072
BsrI ACTGG 2 cut(s) 53, 314
BssAI RCCGGY 1 cut(s) 1072
BssECI CCNNGG 2 cut(s) 1112, 1131
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 1116
Bst6I CTCTTC 1 cut(s) 496
BstAPI GCANNNNNTGC 2 cut(s) 368, 390
BstBI TTCGAA 4 cut(s) 376, 599, 618, 1016
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 4 cut(s) 17, 271, 327, 504
BstDSI CCRYGG 1 cut(s) 1112
BstFNI CGCG 1 cut(s) 593
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstMAI GTCTC 7 cut(s) 44, 72, 196, 198, 515, 765, 1095
BstMWI GCNNNNNNNGC 5 cut(s) 368, 390, 576, 758, 1117
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 3 cut(s) 164, 658, 913
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 6 cut(s) 242, 270, 287, 374, 648, 934
BstV2I GAAGAC 3 cut(s) 110, 245, 627
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
Bsu15I ATCGAT 2 cut(s) 210, 746
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 873, 913
BsuTUI ATCGAT 2 cut(s) 210, 746
BtgI CCRYGG 1 cut(s) 1112
BtgZI GCGATG 1 cut(s) 402
BtrI CACGTC 3 cut(s) 197, 404, 1046
BtsI GCAGTG 2 cut(s) 366, 774
BtsIMutI CAGTG 2 cut(s) 366, 774
Cac8I GCNNGC 1 cut(s) 409
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 641
Cfr10I RCCGGY 1 cut(s) 1072
Cfr13I GGNCC 1 cut(s) 911
ClaI ATCGAT 2 cut(s) 210, 746
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 2 cut(s) 53, 433
DdeI CTNAG 4 cut(s) 17, 271, 327, 504
EaeI YGGCCR 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
EciI GGCGGA 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 87
Eco47III AGCGCT 1 cut(s) 640
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 2 cut(s) 41, 792
EcoRI GAATTC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 87
Esp3I CGTCTC 2 cut(s) 72, 1095
FaeI CATG 2 cut(s) 56, 436
FaiI YATR 8 cut(s) 54, 113, 185, 434, 444, 465, 652, 842
FalI AAGNNNNNCTT 4 cut(s) 373, 405, 745, 777
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 52, 432
FbaI TGATCA 1 cut(s) 900
Fnu4HI GCNGC 7 cut(s) 256, 259, 276, 363, 394, 637, 948
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 7 cut(s) 256, 259, 276, 363, 394, 637, 948
FspBI CTAG 3 cut(s) 68, 288, 803
GlaI GCGC 1 cut(s) 640
GluI GCNGC 7 cut(s) 256, 259, 276, 363, 394, 637, 948
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 2 cut(s) 873, 913
HapII CCGG 3 cut(s) 660, 914, 1073
HhaI GCGC 1 cut(s) 641
Hin1II CATG 2 cut(s) 56, 436
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HinfI GANTC 6 cut(s) 91, 508, 557, 627, 704, 1037
HpaII CCGG 3 cut(s) 660, 914, 1073
HphI GGTGA 4 cut(s) 276, 706, 713, 1032
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 4 cut(s) 127, 201, 895, 1095
Hpy188III TCNNGA 8 cut(s) 41, 100, 338, 356, 450, 693, 929, 1023
Hpy8I GTNNAC 1 cut(s) 714
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 3 cut(s) 307, 392, 900
HpyCH4III ACNGT 1 cut(s) 1116
HpyCH4IV ACGT 7 cut(s) 196, 281, 403, 1007, 1045, 1050, 1088
HpyCH4V TGCA 7 cut(s) 115, 258, 362, 411, 442, 458, 636
HpyF10VI GCNNNNNNNGC 5 cut(s) 368, 390, 576, 758, 1117
HpyF3I CTNAG 4 cut(s) 17, 271, 327, 504
HpySE526I ACGT 7 cut(s) 196, 281, 403, 1007, 1045, 1050, 1088
Hsp92II CATG 2 cut(s) 56, 436
HspAI GCGC 1 cut(s) 639
Ksp22I TGATCA 1 cut(s) 900
LmnI GCTCC 1 cut(s) 174
Lsp1109I GCAGC 6 cut(s) 242, 270, 287, 374, 648, 934
LweI GCATC 2 cut(s) 349, 615
MaeI CTAG 3 cut(s) 68, 288, 803
MaeII ACGT 7 cut(s) 196, 281, 403, 1007, 1045, 1050, 1088
MaeIII GTNAC 3 cut(s) 282, 1038, 1046
MbiI CCGCTC 1 cut(s) 808
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 87, 786
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 4 cut(s) 595, 610, 896, 973
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 3 cut(s) 517, 566, 1046
MmeI TCCRAC 3 cut(s) 204, 1109, 1118
Mox20I TGGCCA 1 cut(s) 873
MroXI GAANNNNTTC 1 cut(s) 760
MscI TGGCCA 1 cut(s) 873
MslI CAYNNNNRTG 2 cut(s) 480, 779
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 3 cut(s) 660, 914, 1073
MspR9I CCNGG 3 cut(s) 166, 660, 915
MvaI CCWGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 5 cut(s) 368, 390, 576, 758, 1117
NciI CCSGG 2 cut(s) 660, 915
NlaIII CATG 2 cut(s) 56, 436
NlaIV GGNNCC 1 cut(s) 969
NmeAIII GCCGAG 1 cut(s) 767
NmuCI GTSAC 3 cut(s) 282, 1038, 1046
NspI RCATGY 1 cut(s) 436
NspV TTCGAA 4 cut(s) 376, 599, 618, 1016
OliI CACNNNNGTG 1 cut(s) 779
PaeR7I CTCGAG 2 cut(s) 41, 792
PcsI WCGNNNNNNNCGW 2 cut(s) 930, 1013
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 3 cut(s) 91, 627, 704
PfoI TCCNGGA 1 cut(s) 164
PkrI GCNGC 7 cut(s) 257, 260, 277, 364, 395, 638, 949
PleI GAGTC 3 cut(s) 516, 565, 1045
PpsI GAGTC 3 cut(s) 516, 565, 1045
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 969
PspPI GGNCC 1 cut(s) 911
PspXI VCTCGAGB 1 cut(s) 792
PstI CTGCAG 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 135
PvuII CAGCTG 1 cut(s) 947
RseI CAYNNNNRTG 2 cut(s) 480, 779
SatI GCNGC 7 cut(s) 256, 259, 276, 363, 394, 637, 948
Sau96I GGNCC 1 cut(s) 911
SchI GAGTC 3 cut(s) 517, 566, 1046
ScrFI CCNGG 3 cut(s) 166, 660, 915
SduI GDGCHC 2 cut(s) 87, 786
SfaNI GCATC 2 cut(s) 349, 615
SfcI CTRYAG 1 cut(s) 256
Sfr274I CTCGAG 2 cut(s) 41, 792
SfuI TTCGAA 4 cut(s) 376, 599, 618, 1016
SlaI CTCGAG 2 cut(s) 41, 792
SmiMI CAYNNNNRTG 2 cut(s) 480, 779
SmlI CTYRAG 3 cut(s) 41, 792, 1158
SmoI CTYRAG 3 cut(s) 41, 792, 1158
Sse9I AATT 4 cut(s) 595, 610, 896, 973
SsiI CCGC 7 cut(s) 133, 149, 393, 591, 759, 808, 819
SspMI CTAG 3 cut(s) 68, 288, 803
StyD4I CCNGG 3 cut(s) 164, 658, 913
TaaI ACNGT 1 cut(s) 1116
TaiI ACGT 7 cut(s) 199, 284, 406, 1010, 1048, 1053, 1091
TasI AATT 4 cut(s) 595, 610, 896, 973
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 3 cut(s) 91, 627, 704
TscAI CASTG 2 cut(s) 373, 781
TseFI GTSAC 3 cut(s) 282, 1038, 1046
TseI GCWGC 6 cut(s) 255, 258, 275, 362, 636, 947
Tsp45I GTSAC 3 cut(s) 282, 1038, 1046
TspDTI ATGAA 2 cut(s) 251, 603
TspGWI ACGGA 2 cut(s) 109, 639
TspRI CASTG 2 cut(s) 373, 781
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 436
XhoI CTCGAG 2 cut(s) 41, 792
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 3 cut(s) 68, 288, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.