Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Forward (+)

23411473 .. 23413129

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCGCCCTATGGTGTGGATTGAGCCCAATGATGAGTATCCAGAAGGCCGAGTTGTGTCCAGTGGAAAGAGCACATTGCACATTGGCGGCACTTTCTATACAACTGTGCAGCGAAGAAGAAAAAAAGAAGAGGGATATTCATTGCGACCAAGCGCTTCATATAGTAGATTAGCCGGGTCAGATCTAACTCCTTATGACAAGCGAGCTGCTGGTACCATGTCTCCCTTTGAACATGGCGAGTTTTTTGTTCTTGATGATGGTGGAGAGCAGCTAATCAGAGTTTCAAATATCCAGCAGCAGTGTGATGTGGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

106

Amino Acids

11.82

Weight (kDa)

6.09

Isoelectric Point (pI)

71.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_synth_N	PF06418	61 - 92	3.4e-07	CTP synthase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	309
AfaI	GTAC	1 cut(s)	214
AfeI	AGCGCT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	230, 285
AluBI	AGCT	2 cut(s)	206, 271
AluI	AGCT	2 cut(s)	206, 271
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	225
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	2 cut(s)	46, 309
ApeKI	GCWGC	4 cut(s)	109, 206, 268, 295
Asp718I	GGTACC	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	6, 155
AsuC2I	CCSGG	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	121, 193, 280, 307
BccI	CCATC	1 cut(s)	251
BciVI	GTATCC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	5 cut(s)	88, 110, 207, 269, 296
BlsI	GCNGC	5 cut(s)	89, 111, 208, 270, 297
Bme1390I	CCNGG	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	2 cut(s)	74, 140
Bse8I	GATNNNNATC	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	36
BseMI	GCAATG	2 cut(s)	74, 140
BseNI	ACTGG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	121, 193, 280, 307
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	48, 311
BshNI	GGYRCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	48, 311
Bsp1286I	GDGCHC	2 cut(s)	27, 74
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	48, 311
BspLI	GGNNCC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	74, 140
BsrI	ACTGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	6, 155
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	121, 193, 280, 307
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	48, 311
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	67, 305
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	2 cut(s)	6, 155
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	217, 233
CviJI	RGCY	6 cut(s)	25, 48, 173, 206, 271, 311
CviKI_1	RGCY	6 cut(s)	25, 48, 173, 206, 271, 311
CviQI	GTAC	1 cut(s)	213
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	2 cut(s)	220, 236
FaiI	YATR	7 cut(s)	11, 99, 160, 162, 195, 218, 234
FatI	CATG	2 cut(s)	216, 232
Fnu4HI	GCNGC	5 cut(s)	88, 110, 207, 269, 296
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	5 cut(s)	88, 110, 207, 269, 296
GlaI	GCGC	2 cut(s)	5, 154
GluI	GCNGC	5 cut(s)	88, 110, 207, 269, 296
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	48, 311
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	2 cut(s)	6, 155
Hin1II	CATG	2 cut(s)	220, 236
Hin6I	GCGC	2 cut(s)	4, 153
HinP1I	GCGC	2 cut(s)	4, 153
HpaII	CCGG	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	181, 278
Hpy188III	TCNNGA	2 cut(s)	41, 251
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	79, 109
Hsp92II	CATG	2 cut(s)	220, 236
HspAI	GCGC	2 cut(s)	4, 153
KpnI	GGTACC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	54, 73, 187, 195, 305
Lsp1109I	GCAGC	4 cut(s)	121, 193, 280, 307
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	126, 129, 140
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	27, 74
MlsI	TGGCCA	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	311
MnlI	CCTC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	1 cut(s)	316
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	175
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	220, 236
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	89, 111, 208, 270, 297
PspN4I	GGNNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	5 cut(s)	88, 110, 207, 269, 296
Sau3AI	GATC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	2 cut(s)	27, 74
SetI	ASST	2 cut(s)	208, 273
SsiI	CCGC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	106
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	2 cut(s)	67, 305
TseI	GCWGC	4 cut(s)	109, 206, 268, 295
TspDTI	ATGAA	2 cut(s)	129, 147
TspRI	CASTG	2 cut(s)	67, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.