Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

17134477 .. 17135511

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032630

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGAGATCCAGTTTCAGATGAAATGTTTCATATCTCAAGCTATGGCATTCGAAACACAACAATGGAAAAGCAGATTTCTGTAGATCCAATATCATTGAATAGAGAATTGAGTGATAATCCAGTGCAGACTGTTGTTTCTACTCCAAAGCAAAAAGGACCGAACCAACTGCCGCCCCTATTGCCTCCTACAAATTCCAAGTTTTTAAGCTTAAGTCTGCCAAATTCAGCAGCCTCATCACCACGATTTGGTGCCTCATTGTTGAAGAAGAAATGGAAGAATGAAAGGCAAGTATCTGCCCAGCAAGTTGAGGACGTGAACCACCTCCACTCTGCATCCTACAACCCGCTTCCTCTGCAACAAGAACAATTTCGACGGACCAAGTCGTGCGGTGAAGGAAGAGAATATGTTCCTGATGACTTTGATCTTTGGCTGATTCAACCAAATGCCATTGAAATTGTCAACAAAGCATATGCCAATTACACTAGCTTCTCCAAAACTGAGGTCAACAGAGCTGTGCATAAAAATGGCAAGAACAATGATCCAAGTGATGATATCGATGAGTTCAAATGTGGAGCTCTCTGCCTCTACCTTCCTGGCTTCGGCAGCAAGGCAAAGCCAGTGAGAGCAAGAAAGGGAGAATCTGAATTGCAAAATCGAAATGTCATCTCTAGATCAGTTTCCTTGGAAAAATTTGAGTGTGGCTCTTGGGCTTCTCAAGTTATGGTAAGTGGCAATTTAGAGGACTCCATGGGTCACTTTGATCTGCCACTGGAGTTAATAAGAGGCAATGTAAATGATGCACATTCACCAGTTACTACAGGTTTCCTCTTTGACAAGGATATAAAAGGAGTCCTGAAGAATGGCTCAGCCAGAACATCAGCAGCTAGAAAATCACATGAATCGCCGCGCCACGTTCGGTTTTCGACATCATCTCCGAAATCTTACCCTGCTTCACCGGGTTCTTGCATCACGCCTCGCTTGCGCAAAGCTAGGGAGGATTTCAATGCTTTCTTAGAAGCACAGAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.12

Weight (kDa)

8.96

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	986
AccB1I	GGYRCC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	248
AccII	CGCG	1 cut(s)	910
AciI	CCGC	4 cut(s)	173, 347, 390, 908
AclWI	GGATC	3 cut(s)	2, 80, 536
AcsI	RAATTY	3 cut(s)	193, 223, 692
AcuI	CTGAAG	1 cut(s)	878
AdeI	CACNNNGTG	1 cut(s)	1028
AfiI	CCNNNNNNNGG	2 cut(s)	248, 602
AflII	CTTAAG	1 cut(s)	211
AgsI	TTSAA	6 cut(s)	100, 265, 440, 455, 568, 1006
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	42, 210, 489, 515, 578, 887, 992
AluI	AGCT	7 cut(s)	42, 210, 489, 515, 578, 887, 992
Alw21I	GWGCWC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	2, 80, 536
ApeKI	GCWGC	3 cut(s)	230, 606, 884
ApoI	RAATTY	3 cut(s)	193, 223, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
Asp700I	GAANNNNTTC	3 cut(s)	27, 369, 408
AspLEI	GCGC	2 cut(s)	912, 987
AspS9I	GGNCC	2 cut(s)	158, 378
AsuC2I	CCSGG	1 cut(s)	960
AsuHPI	GGTGA	4 cut(s)	231, 404, 801, 948
AsuII	TTCGAA	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	158, 378
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	3 cut(s)	242, 618, 896
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	960
BfaI	CTAG	4 cut(s)	486, 672, 888, 993
BfmI	CTRYAG	2 cut(s)	81, 819
BfrI	CTTAAG	1 cut(s)	211
BisI	GCNGC	5 cut(s)	173, 231, 607, 885, 908
BlpI	GCTNAGC	1 cut(s)	868
BlsI	GCNGC	5 cut(s)	174, 232, 608, 886, 909
Bme1390I	CCNGG	2 cut(s)	597, 960
Bme18I	GGWCC	2 cut(s)	158, 378
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	2 cut(s)	158, 378
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	597, 960
BmsI	GCATC	3 cut(s)	344, 790, 978
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	1 cut(s)	868
Bpu14I	TTCGAA	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	22, 702
BpuMI	CCSGG	1 cut(s)	960
Bsa29I	ATCGAT	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	684, 750
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 919, 949
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 602
Bse1I	ACTGG	5 cut(s)	11, 122, 620, 777, 812
Bse3DI	GCAATG	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	684, 750
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	248, 602
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	2 cut(s)	492, 882
BseNI	ACTGG	5 cut(s)	11, 122, 620, 777, 812
BseXI	GCAGC	3 cut(s)	242, 618, 896
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	910
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	959
BslI	CCNNNNNNNGG	2 cut(s)	248, 602
BsmI	GAATGC	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
Bsp1720I	GCTNAGC	1 cut(s)	868
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	4 cut(s)	173, 347, 390, 908
BspCNI	CTCAG	2 cut(s)	493, 881
BspDI	ATCGAT	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	910
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	3 cut(s)	2, 80, 536
BspT104I	TTCGAA	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	251
BspTI	CTTAAG	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	796
BsrI	ACTGG	5 cut(s)	11, 122, 620, 777, 812
BssECI	CCNNGG	2 cut(s)	684, 750
BssMI	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
BssT1I	CCWWGG	2 cut(s)	684, 750
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	394
BstAFI	CTTAAG	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	983
BstDEI	CTNAG	3 cut(s)	501, 868, 1015
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	1 cut(s)	335
BstFNI	CGCG	1 cut(s)	910
BstHHI	GCGC	2 cut(s)	912, 987
BstKTI	GATC	6 cut(s)	10, 88, 427, 544, 677, 766
BstMBI	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 355, 606, 982, 1028
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	595, 958
BstSFI	CTRYAG	2 cut(s)	81, 819
BstUI	CGCG	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	242, 618, 896
BstX2I	RGATCY	2 cut(s)	7, 85
BstYI	RGATCY	2 cut(s)	7, 85
Bsu15I	ATCGAT	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	750
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	3 cut(s)	129, 627, 770
Cac8I	GCNNGC	1 cut(s)	983
CfoI	GCGC	2 cut(s)	912, 987
Cfr13I	GGNCC	2 cut(s)	158, 378
ClaI	ATCGAT	1 cut(s)	558
CviAII	CATG	3 cut(s)	751, 899, 1032
DdeI	CTNAG	3 cut(s)	501, 868, 1015
DpnI	GATC	6 cut(s)	9, 87, 426, 543, 676, 765
DpnII	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
DraIII	CACNNNGTG	1 cut(s)	1028
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	578
Eco130I	CCWWGG	2 cut(s)	684, 750
Eco24I	GRGCYC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	158, 378
Eco53kI	GAGCTC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	878
EcoICRI	GAGCTC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	684, 750
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	684, 750
FaeI	CATG	3 cut(s)	754, 902, 1035
FatI	CATG	3 cut(s)	750, 898, 1031
FauI	CCCGC	1 cut(s)	354
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	5 cut(s)	173, 231, 607, 885, 908
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	5 cut(s)	173, 231, 607, 885, 908
FspBI	CTAG	4 cut(s)	486, 672, 888, 993
FspI	TGCGCA	1 cut(s)	986
GlaI	GCGC	2 cut(s)	911, 986
GluI	GCNGC	5 cut(s)	173, 231, 607, 885, 908
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	794
HapII	CCGG	1 cut(s)	959
HhaI	GCGC	2 cut(s)	912, 987
Hin1II	CATG	3 cut(s)	754, 902, 1035
Hin6I	GCGC	2 cut(s)	910, 985
HinP1I	GCGC	2 cut(s)	910, 985
HincII	GTYRAC	2 cut(s)	463, 508
HindII	GTYRAC	2 cut(s)	463, 508
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	5 cut(s)	436, 641, 746, 852, 902
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	4 cut(s)	231, 404, 801, 948
Hpy166II	GTNNAC	3 cut(s)	319, 463, 508
Hpy188I	TCNGA	3 cut(s)	19, 646, 939
Hpy188III	TCNNGA	3 cut(s)	413, 672, 856
Hpy8I	GTNNAC	3 cut(s)	319, 463, 508
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	389, 602
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	315, 915
HpyCH4V	TGCA	8 cut(s)	127, 335, 358, 520, 652, 803, 969, 1031
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 355, 606, 982, 1028
HpyF3I	CTNAG	3 cut(s)	501, 868, 1015
HpySE526I	ACGT	2 cut(s)	315, 915
Hsp92II	CATG	3 cut(s)	754, 902, 1035
HspAI	GCGC	2 cut(s)	910, 985
Kzo9I	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	3 cut(s)	242, 618, 896
LweI	GCATC	3 cut(s)	344, 790, 978
MaeI	CTAG	4 cut(s)	486, 672, 888, 993
MaeII	ACGT	2 cut(s)	315, 915
MaeIII	GTNAC	2 cut(s)	755, 814
MalI	GATC	6 cut(s)	9, 87, 426, 543, 676, 765
MboI	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
MboII	GAAGA	5 cut(s)	277, 280, 289, 411, 871
MflI	RGATCY	2 cut(s)	7, 85
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	9 cut(s)	107, 193, 223, 368, 456, 478, 647, 692, 736
MlyI	GAGTC	2 cut(s)	740, 861
MroXI	GAANNNNTTC	3 cut(s)	27, 369, 408
MseI	TTAA	3 cut(s)	206, 212, 779
MslI	CAYNNNNRTG	2 cut(s)	62, 525
MspCI	CTTAAG	1 cut(s)	211
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	2 cut(s)	597, 960
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	910
MwoI	GCNNNNNNNGC	5 cut(s)	181, 355, 606, 982, 1028
NciI	CCSGG	1 cut(s)	960
NcoI	CCATGG	1 cut(s)	750
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
NlaIII	CATG	3 cut(s)	754, 902, 1035
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	755
NsbI	TGCGCA	1 cut(s)	986
NspV	TTCGAA	1 cut(s)	52
PctI	GAATGC	1 cut(s)	48
PdmI	GAANNNNTTC	3 cut(s)	27, 369, 408
PfeI	GAWTC	3 cut(s)	436, 641, 902
PflFI	GACNNNGTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	5 cut(s)	174, 232, 608, 886, 909
PleI	GAGTC	2 cut(s)	740, 860
PpsI	GAGTC	2 cut(s)	740, 860
Psp124BI	GAGCTC	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	158, 378
PsuI	RGATCY	2 cut(s)	7, 85
PsyI	GACNNNGTC	1 cut(s)	382
RseI	CAYNNNNRTG	2 cut(s)	62, 525
SacI	GAGCTC	1 cut(s)	580
SaqAI	TTAA	3 cut(s)	206, 212, 779
SatI	GCNGC	5 cut(s)	173, 231, 607, 885, 908
Sau3AI	GATC	6 cut(s)	7, 85, 424, 541, 674, 763
Sau96I	GGNCC	2 cut(s)	158, 378
SchI	GAGTC	2 cut(s)	740, 861
ScrFI	CCNGG	2 cut(s)	597, 960
SduI	GDGCHC	1 cut(s)	580
SfaNI	GCATC	3 cut(s)	344, 790, 978
SfcI	CTRYAG	2 cut(s)	81, 819
SfuI	TTCGAA	1 cut(s)	52
SinI	GGWCC	2 cut(s)	158, 378
SmiMI	CAYNNNNRTG	2 cut(s)	62, 525
SmlI	CTYRAG	3 cut(s)	37, 211, 717
SmoI	CTYRAG	3 cut(s)	37, 211, 717
Sse9I	AATT	9 cut(s)	107, 193, 223, 368, 456, 478, 647, 692, 736
SsiI	CCGC	4 cut(s)	173, 347, 390, 908
SspMI	CTAG	4 cut(s)	486, 672, 888, 993
SstI	GAGCTC	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	595, 958
StyI	CCWWGG	2 cut(s)	684, 750
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	2 cut(s)	318, 918
TaqI	TCGA	5 cut(s)	52, 373, 558, 658, 926
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	9 cut(s)	107, 193, 223, 368, 456, 478, 647, 692, 736
TauI	GCSGC	2 cut(s)	175, 910
TfiI	GAWTC	3 cut(s)	436, 641, 902
Tru1I	TTAA	3 cut(s)	206, 212, 779
Tru9I	TTAA	3 cut(s)	206, 212, 779
TscAI	CASTG	3 cut(s)	129, 627, 777
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	3 cut(s)	230, 606, 884
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	4 cut(s)	20, 36, 297, 915
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	3 cut(s)	129, 627, 777
Tth111I	GACNNNGTC	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	248
Vha464I	CTTAAG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	158, 378
XapI	RAATTY	3 cut(s)	193, 223, 692
XbaI	TCTAGA	1 cut(s)	671
XmnI	GAANNNNTTC	3 cut(s)	27, 369, 408
XspI	CTAG	4 cut(s)	486, 672, 888, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.