Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007028

Physical Location & Seq

Genomic Coordinates Reverse (-)

7964165 .. 7965202

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCAAATCCAGTTTCAGATGAAATGCTTCATATTTCAAGATACGGGTTTCGGAACGCAACGATGGAAAAGCAGATTTCTGTGGATCCGATATCGTTGCATAGAGAAGAGAGTGCTAATCCAGTGCAGGCTGGTGTTACTGCTCCAGAGCCAAAAGGACAGAACCAACTGCCGGCGCTATTGCCTCCTACAAATTCTAATTTTTTAAGCATAAGTCTGCCGAATTCAGCAACCTCATCGCCACGATTCGGCGCCTCATTGCTGAAGAAGAAATGGAAGAATGAAAGGCAAGTATCTCCCCAGAAAGTTGAGGATGTGAACCAGCTCCACTCTGCATCCTTCAACCCTCTTCATCTGCAACAAGAACTCCAATTTCGACGCACCAAGTCGTGCGGTGAAGGAAGAGAATATGCTCCTGATGACTTTGATCTTTGGCTGATTCAACCAAATGCCAATGAAATTGTCAACAGAGCATATACCAGCTACACCAGCTTCTCCAAAACAGAAGTCAACAGACCTGTGCATGAAAATGGCAAGAAAAAGGAACCAACTGATGACATCGATGAGTTCAAATGTGGAGCTCTCTGCTTGTTCCTTCCTGGCTTCGGCGGCAAGGCAAAGCCAGTGAGAGCAAGAAAGGTAGAATCCGAACTGCAAAATCGAAATGTCATCTCTAGATCAGTTTCTTTGGAAAAGTTTGAATGTGGTTCGTGGGCTTCTCAAAACATGGTAAGTGGCAACTTAGAGGACTCCATGGGTCACTTTGATCTGCCTCTGGAGTTAATAAGAGGCAATGTAAATGATGCACATTCCCCAGTTACTACAGGTTTCCTATTTGATAAGGACATAAAAGGAGTCCTGAAGAATGGCTCAGCCAGAACCTCAGCAGCTAGAAGATCACATGAATCACCTCGCCACGTTCGGTTTTCGACATCATCTCCGAAATCTTACCCTGCCTCACCGGGTTCTTGCATCACACCTCGCTTGCGCAAAGCTAGGGAGGATTTCAATGCTTTCTTAGAAGCACAGAGCGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

38.35

Weight (kDa)

9.01

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20190 AT5G44660 AT5G44660
fragaria_vesca	FvH4_3g13340
malus_domestica	MD05G1242700.v1.1 MD10G1224500.v1.1
prunus_persica	Prupe.4G120700_v2.0.a1
pyrus_communis	pycom05g21920
rosa_chinensis	RchiOBHm_Chr5g0021811 RchiOBHm_Chr5g0021821 RchiOBHm_Chr5g0021971
rosa_laevigata	RLG00000028492 RLG00000032630 RLG00000032631
rosa_multiflora	Rmu_sc0007239.1_g000013 Rmu_sc0008460.1_g000001
rosa_rugosa	Rorug05G0069700 Rorug05G0069700
rosa_samantha	Rh5AG158300 Rh5BG157800 Rh5CG171900 Rh5CG172000 Rh5DG158100
rosa_wichuraiana	Rw5G014090 Rw5G014100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	989
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	1034
AciI	CCGC	2 cut(s)	393, 609
AclWI	GGATC	2 cut(s)	80, 93
AcsI	RAATTY	2 cut(s)	193, 223
AcuI	CTGAAG	2 cut(s)	284, 881
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	172, 248, 605
AgsI	TTSAA	6 cut(s)	39, 343, 443, 571, 701, 1009
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	6 cut(s)	325, 483, 492, 581, 890, 995
AluI	AGCT	6 cut(s)	325, 483, 492, 581, 890, 995
Alw21I	GWGCWC	1 cut(s)	583
AlwI	GGATC	2 cut(s)	80, 93
ApeKI	GCWGC	1 cut(s)	887
ApoI	RAATTY	2 cut(s)	193, 223
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	4 cut(s)	178, 254, 990, 1034
AsuC2I	CCSGG	1 cut(s)	963
AsuHPI	GGTGA	3 cut(s)	407, 900, 951
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	583
BbvCI	CCTCAGC	1 cut(s)	883
BbvI	GCAGC	1 cut(s)	899
BccI	CCATC	1 cut(s)	58
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 219, 253
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	963
BfaI	CTAG	3 cut(s)	675, 891, 996
BfmI	CTRYAG	1 cut(s)	822
BfoI	RGCGCY	2 cut(s)	179, 255
BisI	GCNGC	2 cut(s)	610, 888
BlpI	GCTNAGC	1 cut(s)	871
BlsI	GCNGC	2 cut(s)	611, 889
Bme1390I	CCNGG	2 cut(s)	600, 963
BmiI	GGNNCC	3 cut(s)	87, 253, 546
BmrFI	CCNGG	2 cut(s)	600, 963
BmrI	ACTGGG	1 cut(s)	809
BmsI	GCATC	3 cut(s)	344, 793, 981
BmuI	ACTGGG	1 cut(s)	809
BpmI	CTGGAG	2 cut(s)	129, 797
Bpu10I	CCTNAGC	1 cut(s)	883
Bpu1102I	GCTNAGC	1 cut(s)	871
BpuMI	CCSGG	1 cut(s)	963
Bsa29I	ATCGAT	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	753
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 922, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 248, 605
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	4 cut(s)	11, 122, 623, 815
Bse3DI	GCAATG	2 cut(s)	257, 799
BseBI	CCWGG	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	2 cut(s)	319, 335
BseLI	CCNNNNNNNGG	3 cut(s)	172, 248, 605
BseMI	GCAATG	2 cut(s)	257, 799
BseMII	CTCAG	2 cut(s)	885, 897
BseNI	ACTGG	4 cut(s)	11, 122, 623, 815
BseXI	GCAGC	1 cut(s)	899
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	1034
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	173, 962
BslI	CCNNNNNNNGG	3 cut(s)	172, 248, 605
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	5 cut(s)	85, 427, 677, 766, 896
Bsp1720I	GCTNAGC	1 cut(s)	871
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	2 cut(s)	393, 609
BspCNI	CTCAG	2 cut(s)	884, 896
BspDI	ATCGAT	1 cut(s)	561
BspFNI	CGCG	1 cut(s)	1034
BspLI	GGNNCC	3 cut(s)	87, 253, 546
BspPI	GGATC	2 cut(s)	80, 93
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	257, 799
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	4 cut(s)	11, 122, 623, 815
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	5 cut(s)	85, 427, 677, 766, 896
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	600
Bst6I	CTCTTC	3 cut(s)	102, 354, 397
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	129, 174, 986
BstDEI	CTNAG	4 cut(s)	742, 871, 883, 1018
BstDSI	CCRYGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	319, 335
BstFNI	CGCG	1 cut(s)	1034
BstH2I	RGCGCY	2 cut(s)	179, 255
BstHHI	GCGC	4 cut(s)	178, 254, 990, 1034
BstKTI	GATC	5 cut(s)	88, 430, 680, 769, 899
BstMBI	GATC	5 cut(s)	85, 427, 677, 766, 896
BstMWI	GCNNNNNNNGC	3 cut(s)	489, 609, 1031
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	598, 961
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	1 cut(s)	1034
BstV1I	GCAGC	1 cut(s)	899
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	561
BsuTUI	ATCGAT	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	753
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	319, 335
BtsIMutI	CAGTG	2 cut(s)	129, 630
Cac8I	GCNNGC	3 cut(s)	129, 174, 986
CfoI	GCGC	4 cut(s)	178, 254, 990, 1034
Cfr10I	RCCGGY	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	561
CseI	GACGC	1 cut(s)	387
CviAII	CATG	4 cut(s)	524, 727, 754, 902
DdeI	CTNAG	4 cut(s)	742, 871, 883, 1018
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	5 cut(s)	87, 429, 679, 768, 898
DpnII	GATC	5 cut(s)	85, 427, 677, 766, 896
Eam1104I	CTCTTC	3 cut(s)	102, 354, 397
EarI	CTCTTC	3 cut(s)	102, 354, 397
Ecl136II	GAGCTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	581
Eco57I	CTGAAG	2 cut(s)	284, 881
EcoICRI	GAGCTC	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	598
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	583
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	4 cut(s)	527, 730, 757, 905
FatI	CATG	4 cut(s)	523, 726, 753, 901
Fnu4HI	GCNGC	2 cut(s)	610, 888
FokI	GGATG	2 cut(s)	322, 326
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	2 cut(s)	610, 888
FspBI	CTAG	3 cut(s)	675, 891, 996
FspI	TGCGCA	1 cut(s)	989
GlaI	GCGC	4 cut(s)	177, 253, 989, 1033
GluI	GCNGC	2 cut(s)	610, 888
GsuI	CTGGAG	2 cut(s)	129, 797
HaeII	RGCGCY	2 cut(s)	179, 255
HapII	CCGG	2 cut(s)	173, 962
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	4 cut(s)	178, 254, 990, 1034
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	527, 730, 757, 905
Hin6I	GCGC	4 cut(s)	176, 252, 988, 1032
HinP1I	GCGC	4 cut(s)	176, 252, 988, 1032
HincII	GTYRAC	2 cut(s)	466, 511
HindII	GTYRAC	2 cut(s)	466, 511
HinfI	GANTC	6 cut(s)	246, 439, 644, 749, 855, 905
HpaII	CCGG	2 cut(s)	173, 962
HphI	GGTGA	3 cut(s)	407, 900, 951
Hpy166II	GTNNAC	3 cut(s)	319, 466, 511
Hpy188I	TCNGA	5 cut(s)	19, 54, 90, 649, 942
Hpy188III	TCNNGA	6 cut(s)	39, 146, 416, 675, 776, 859
Hpy8I	GTNNAC	3 cut(s)	319, 466, 511
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	3 cut(s)	349, 392, 605
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	8 cut(s)	100, 127, 335, 358, 523, 655, 806, 972
HpyF10VI	GCNNNNNNNGC	3 cut(s)	489, 609, 1031
HpyF3I	CTNAG	4 cut(s)	742, 871, 883, 1018
HpySE526I	ACGT	1 cut(s)	918
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	527, 730, 757, 905
HspAI	GCGC	4 cut(s)	176, 252, 988, 1032
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Kzo9I	GATC	5 cut(s)	85, 427, 677, 766, 896
LmnI	GCTCC	4 cut(s)	148, 330, 418, 578
Lsp1109I	GCAGC	1 cut(s)	899
LweI	GCATC	3 cut(s)	344, 793, 981
MaeI	CTAG	3 cut(s)	675, 891, 996
MaeII	ACGT	1 cut(s)	918
MaeIII	GTNAC	3 cut(s)	136, 758, 817
MalI	GATC	5 cut(s)	87, 429, 679, 768, 898
MboI	GATC	5 cut(s)	85, 427, 677, 766, 896
MboII	GAAGA	8 cut(s)	119, 277, 280, 289, 341, 414, 874, 906
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	5 cut(s)	193, 199, 223, 371, 459
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	743, 864
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	206, 782
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	2 cut(s)	173, 962
MspR9I	CCNGG	2 cut(s)	600, 963
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	3 cut(s)	489, 609, 1031
NaeI	GCCGGC	1 cut(s)	174
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	963
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	5 cut(s)	85, 427, 677, 766, 896
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	4 cut(s)	527, 730, 757, 905
NlaIV	GGNNCC	3 cut(s)	87, 253, 546
NmuCI	GTSAC	1 cut(s)	758
NsbI	TGCGCA	1 cut(s)	989
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	246, 439, 644, 905
PkrI	GCNGC	2 cut(s)	611, 889
PleI	GAGTC	2 cut(s)	743, 863
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	2 cut(s)	743, 863
Psp124BI	GAGCTC	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	87, 253, 546
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	583
SaqAI	TTAA	2 cut(s)	206, 782
SatI	GCNGC	2 cut(s)	610, 888
Sau3AI	GATC	5 cut(s)	85, 427, 677, 766, 896
SchI	GAGTC	2 cut(s)	743, 864
ScrFI	CCNGG	2 cut(s)	600, 963
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	3 cut(s)	344, 793, 981
SfcI	CTRYAG	1 cut(s)	822
SfoI	GGCGCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	5 cut(s)	193, 199, 223, 371, 459
SsiI	CCGC	2 cut(s)	393, 609
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	675, 891, 996
SstI	GAGCTC	1 cut(s)	583
StyD4I	CCNGG	2 cut(s)	598, 961
StyI	CCWWGG	1 cut(s)	753
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	4 cut(s)	376, 561, 661, 929
TasI	AATT	5 cut(s)	193, 199, 223, 371, 459
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	4 cut(s)	246, 439, 644, 905
Tru1I	TTAA	2 cut(s)	206, 782
Tru9I	TTAA	2 cut(s)	206, 782
TscAI	CASTG	2 cut(s)	129, 630
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	1 cut(s)	887
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	7 cut(s)	20, 36, 297, 341, 471, 540, 918
TspRI	CASTG	2 cut(s)	129, 630
XapI	RAATTY	2 cut(s)	193, 223
XbaI	TCTAGA	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	3 cut(s)	675, 891, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.